RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 AEBP2Q6ZN18 517 aaPredicted RBP24.07■■□□□ 1.44
SCN1A-207ENST00000507401 CHIC1Q5VXU3 224 aa23.06■■□□□ 1.28
SCN1A-207ENST00000507401 SENP3Q9H4L4 574 aaPredicted RBP20.37■□□□□ 0.85
SCN1A-207ENST00000507401 PHF23Q9BUL5 403 aaPredicted RBP20.3■□□□□ 0.84
SCN1A-207ENST00000507401 NISCHQ9Y2I1 1504 aa19.67■□□□□ 0.74
SCN1A-207ENST00000507401 FOXD1Q16676 465 aa19.02■□□□□ 0.64
SCN1A-207ENST00000507401 PLPPR3Q6T4P5 718 aa18.49■□□□□ 0.55
SCN1A-207ENST00000507401 PPP6R1Q9UPN7 881 aa18.04■□□□□ 0.48
SCN1A-207ENST00000507401 ADRA2BP18089 450 aa17.94■□□□□ 0.46
SCN1A-207ENST00000507401 POTEDQ86YR6 584 aa17.93■□□□□ 0.46
SCN1A-207ENST00000507401 PIAS4Q8N2W9 510 aaPredicted RBP17.76■□□□□ 0.43
SCN1A-207ENST00000507401 MSH5O43196 834 aa17.61■□□□□ 0.41
SCN1A-207ENST00000507401 CCDC180Q9P1Z9 1646 aa17.56■□□□□ 0.4
SCN1A-207ENST00000507401 ABCC9O60706 1549 aa17.36■□□□□ 0.37
SCN1A-207ENST00000507401 RB1CC1Q8TDY2 1594 aa16.65■□□□□ 0.26
SCN1A-207ENST00000507401 NACADO15069 1562 aa16.6■□□□□ 0.25
SCN1A-207ENST00000507401 DCAF8L2P0C7V8 631 aa16.53■□□□□ 0.24
SCN1A-207ENST00000507401 MYO15BQ96JP2 1530 aa16.46■□□□□ 0.23
SCN1A-207ENST00000507401 MAPK8IP2Q13387 824 aaPredicted RBP16.41■□□□□ 0.22
SCN1A-207ENST00000507401 ZCCHC6Q5VYS8 1495 aaKnown RBP16.31■□□□□ 0.2
SCN1A-207ENST00000507401 DCAF1Q9Y4B6 1507 aa16.3■□□□□ 0.2
SCN1A-207ENST00000507401 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
SCN1A-207ENST00000507401 PPP4R3CPQ6ZMV5 832 aa16.27■□□□□ 0.2
SCN1A-207ENST00000507401 DMRT2Q9Y5R5 561 aa16.25■□□□□ 0.19
SCN1A-207ENST00000507401 PABPN1Q86U42 306 aaKnown RBP eCLIP16.22■□□□□ 0.19
SCN1A-207ENST00000507401 UNC13AQ9UPW8 1703 aa16.22■□□□□ 0.19
SCN1A-207ENST00000507401 DNAJC5BQ9UF47 199 aa16.18■□□□□ 0.18
SCN1A-207ENST00000507401 BICRAQ9NZM4 1560 aa16.13■□□□□ 0.17
SCN1A-207ENST00000507401 SHROOM4Q9ULL8 1493 aa16■□□□□ 0.15
SCN1A-207ENST00000507401 SCRIBQ14160 1630 aa15.94■□□□□ 0.14
SCN1A-207ENST00000507401 CNKSR2Q8WXI2 1034 aa15.89■□□□□ 0.13
SCN1A-207ENST00000507401 HOXD11P31277 338 aaPredicted RBP15.78■□□□□ 0.12
SCN1A-207ENST00000507401 EIF4G1Q04637 1599 aaKnown RBP15.72■□□□□ 0.11
SCN1A-207ENST00000507401 CC2D2AQ9P2K1 1620 aa15.7■□□□□ 0.1
SCN1A-207ENST00000507401 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
SCN1A-207ENST00000507401 CECR2Q9BXF3 1484 aa15.65■□□□□ 0.1
SCN1A-207ENST00000507401 NCBP3Q53F19 620 aaKnown RBP15.64■□□□□ 0.09
SCN1A-207ENST00000507401 NPM3O75607 178 aaKnown RBP15.53■□□□□ 0.08
SCN1A-207ENST00000507401 KCNA4P22459 653 aa15.47■□□□□ 0.07
SCN1A-207ENST00000507401 DCAF8L1A6NGE4 600 aa15.41■□□□□ 0.06
SCN1A-207ENST00000507401 NCAPD3P42695 1498 aa15.34■□□□□ 0.05
SCN1A-207ENST00000507401 SMARCA4P51532 1647 aa15.28■□□□□ 0.04
SCN1A-207ENST00000507401 ATAD2BQ9ULI0 1458 aa15.27■□□□□ 0.04
SCN1A-207ENST00000507401 BAZ1AQ9NRL2 1556 aaPredicted RBP15.26■□□□□ 0.03
SCN1A-207ENST00000507401 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
SCN1A-207ENST00000507401 HMGXB3Q12766 1538 aa15.19■□□□□ 0.02
SCN1A-207ENST00000507401 PEG3Q9GZU2 1588 aa15.17■□□□□ 0.02
SCN1A-207ENST00000507401 MROH2BQ7Z745 1585 aa15.12■□□□□ 0.01
SCN1A-207ENST00000507401 RNF39Q9H2S5 420 aa15.12■□□□□ 0.01
SCN1A-207ENST00000507401 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
SCN1A-207ENST00000507401 ERCC6Q03468 1493 aa14.99□□□□□ -0.01
SCN1A-207ENST00000507401 NESP48681 1621 aa14.95□□□□□ -0.02
SCN1A-207ENST00000507401 CUX2O14529 1486 aa14.95□□□□□ -0.02
SCN1A-207ENST00000507401 LAMC3Q9Y6N6 1575 aa14.94□□□□□ -0.02
SCN1A-207ENST00000507401 WIZO95785 1651 aa14.93□□□□□ -0.02
SCN1A-207ENST00000507401 CACNB1Q02641 598 aaPredicted RBP14.91□□□□□ -0.02
SCN1A-207ENST00000507401 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.91□□□□□ -0.02
SCN1A-207ENST00000507401 RSF1Q96T23 1441 aaPredicted RBP14.91□□□□□ -0.02
SCN1A-207ENST00000507401 CADPSQ9ULU8 1353 aa14.87□□□□□ -0.03
SCN1A-207ENST00000507401 PDS5BQ9NTI5 1447 aa14.87□□□□□ -0.03
SCN1A-207ENST00000507401 C1QBPQ07021 282 aaKnown RBP14.87□□□□□ -0.03
SCN1A-207ENST00000507401 SLC4A2P04920 1241 aa14.81□□□□□ -0.04
SCN1A-207ENST00000507401 DNAJC5Q9H3Z4 198 aa14.8□□□□□ -0.04
SCN1A-207ENST00000507401 TOP2AP11388 1531 aaKnown RBP14.77□□□□□ -0.04
SCN1A-207ENST00000507401 THOC2Q8NI27 1593 aaKnown RBP14.76□□□□□ -0.05
SCN1A-207ENST00000507401 KIF21AQ7Z4S6 1674 aa14.75□□□□□ -0.05
SCN1A-207ENST00000507401 U3KPZ7 1027 aaPredicted RBP14.75□□□□□ -0.05
SCN1A-207ENST00000507401 CFTRP13569 1480 aa14.73□□□□□ -0.05
SCN1A-207ENST00000507401 MRC2Q9UBG0 1479 aa14.68□□□□□ -0.06
SCN1A-207ENST00000507401 FANCD2Q9BXW9 1451 aa14.66□□□□□ -0.06
SCN1A-207ENST00000507401 CEP164Q9UPV0 1460 aa14.65□□□□□ -0.06
SCN1A-207ENST00000507401 WDR62O43379 1518 aa14.64□□□□□ -0.07
SCN1A-207ENST00000507401 CCDC88BA6NC98 1476 aa14.63□□□□□ -0.07
SCN1A-207ENST00000507401 SLC4A1APQ9BWU0 796 aaKnown RBP14.6□□□□□ -0.07
SCN1A-207ENST00000507401 PRDM2Q13029 1718 aa14.54□□□□□ -0.08
SCN1A-207ENST00000507401 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
SCN1A-207ENST00000507401 ABCC8Q09428 1581 aa14.46□□□□□ -0.09
SCN1A-207ENST00000507401 SPINK5Q9NQ38 1064 aaPredicted RBP14.43□□□□□ -0.1
SCN1A-207ENST00000507401 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
SCN1A-207ENST00000507401 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
SCN1A-207ENST00000507401 DNMBPQ6XZF7 1577 aa14.36□□□□□ -0.11
SCN1A-207ENST00000507401 SUPT5HO00267 1087 aaKnown RBP14.35□□□□□ -0.11
SCN1A-207ENST00000507401 OSCARQ8IYS5 282 aa14.35□□□□□ -0.11
SCN1A-207ENST00000507401 FOXD4L1Q9NU39 408 aa14.31□□□□□ -0.12
SCN1A-207ENST00000507401 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.3□□□□□ -0.12
SCN1A-207ENST00000507401 HNRNPUL2Q1KMD3 747 aaKnown RBP14.3□□□□□ -0.12
SCN1A-207ENST00000507401 ZNF608Q9ULD9 1512 aaPredicted RBP14.3□□□□□ -0.12
SCN1A-207ENST00000507401 ZBTB22O15209 634 aa14.29□□□□□ -0.12
SCN1A-207ENST00000507401 CAPN15O75808 1086 aa14.29□□□□□ -0.12
SCN1A-207ENST00000507401 MYCNP04198 464 aaPredicted RBP14.29□□□□□ -0.12
SCN1A-207ENST00000507401 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
SCN1A-207ENST00000507401 POLA1P09884 1462 aaPredicted RBP14.25□□□□□ -0.13
SCN1A-207ENST00000507401 DSG3P32926 999 aa14.25□□□□□ -0.13
SCN1A-207ENST00000507401 SAMD1Q6SPF0 538 aaPredicted RBP14.25□□□□□ -0.13
SCN1A-207ENST00000507401 SOGA1O94964 1423 aa14.24□□□□□ -0.13
SCN1A-207ENST00000507401 AQRO60306 1485 aaKnown RBP eCLIP14.21□□□□□ -0.13
SCN1A-207ENST00000507401 EIF4G3O43432 1585 aaKnown RBP14.21□□□□□ -0.14
SCN1A-207ENST00000507401 APLP2Q06481 763 aa14.2□□□□□ -0.14
SCN1A-207ENST00000507401 CUX1P39880 1505 aa14.2□□□□□ -0.14
SCN1A-207ENST00000507401 RAD54L2Q9Y4B4 1467 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms