RNA–Protein interactions for RNA: ENST00000506154.1

NEDD4-205, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 6,751 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-205ENST00000506154 NISCHQ9Y2I1 1504 aa5.51□□□□□ -1.53
NEDD4-205ENST00000506154 AEBP2Q6ZN18 517 aaPredicted RBP5.41□□□□□ -1.54
NEDD4-205ENST00000506154 CHIC1Q5VXU3 224 aa5.3□□□□□ -1.56
NEDD4-205ENST00000506154 CCDC180Q9P1Z9 1646 aa5.05□□□□□ -1.6
NEDD4-205ENST00000506154 EHMT2Q96KQ7 1210 aa4.96□□□□□ -1.61
NEDD4-205ENST00000506154 MYO15BQ96JP2 1530 aa4.88□□□□□ -1.63
NEDD4-205ENST00000506154 PHF23Q9BUL5 403 aaPredicted RBP4.88□□□□□ -1.63
NEDD4-205ENST00000506154 DCAF1Q9Y4B6 1507 aa4.86□□□□□ -1.63
NEDD4-205ENST00000506154 ZCCHC6Q5VYS8 1495 aaKnown RBP4.73□□□□□ -1.65
NEDD4-205ENST00000506154 PLPPR3Q6T4P5 718 aa4.59□□□□□ -1.67
NEDD4-205ENST00000506154 SHROOM4Q9ULL8 1493 aa4.57□□□□□ -1.68
NEDD4-205ENST00000506154 UNC13AQ9UPW8 1703 aa4.57□□□□□ -1.68
NEDD4-205ENST00000506154 ADRA2BP18089 450 aa4.54□□□□□ -1.68
NEDD4-205ENST00000506154 BICRAQ9NZM4 1560 aa4.54□□□□□ -1.68
NEDD4-205ENST00000506154 NACADO15069 1562 aa4.53□□□□□ -1.68
NEDD4-205ENST00000506154 KCNA4P22459 653 aa4.5□□□□□ -1.69
NEDD4-205ENST00000506154 PEG3Q9GZU2 1588 aa4.5□□□□□ -1.69
NEDD4-205ENST00000506154 EIF4G1Q04637 1599 aaKnown RBP4.46□□□□□ -1.7
NEDD4-205ENST00000506154 ABCC9O60706 1549 aa4.42□□□□□ -1.7
NEDD4-205ENST00000506154 RB1CC1Q8TDY2 1594 aa4.38□□□□□ -1.71
NEDD4-205ENST00000506154 SLC24A1O60721 1099 aa4.37□□□□□ -1.71
NEDD4-205ENST00000506154 RTN4Q9NQC3 1192 aaKnown RBP4.32□□□□□ -1.72
NEDD4-205ENST00000506154 PPP6R1Q9UPN7 881 aa4.31□□□□□ -1.72
NEDD4-205ENST00000506154 CSRNP3Q8WYN3 585 aa4.28□□□□□ -1.72
NEDD4-205ENST00000506154 DCAF8L2P0C7V8 631 aa4.27□□□□□ -1.73
NEDD4-205ENST00000506154 HMGXB3Q12766 1538 aa4.27□□□□□ -1.73
NEDD4-205ENST00000506154 SENP3Q9H4L4 574 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-205ENST00000506154 SMARCA4P51532 1647 aa4.25□□□□□ -1.73
NEDD4-205ENST00000506154 BAZ1AQ9NRL2 1556 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-205ENST00000506154 PRKCSHP14314 528 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-205ENST00000506154 SMARCA2P51531 1590 aa4.25□□□□□ -1.73
NEDD4-205ENST00000506154 SLC4A1APQ9BWU0 796 aaKnown RBP4.24□□□□□ -1.73
NEDD4-205ENST00000506154 PRDM2Q13029 1718 aa4.23□□□□□ -1.73
NEDD4-205ENST00000506154 SCRIBQ14160 1630 aa4.21□□□□□ -1.74
NEDD4-205ENST00000506154 NCAPD3P42695 1498 aa4.19□□□□□ -1.74
NEDD4-205ENST00000506154 MROH2BQ7Z745 1585 aa4.18□□□□□ -1.74
NEDD4-205ENST00000506154 TOP2AP11388 1531 aaKnown RBP4.17□□□□□ -1.74
NEDD4-205ENST00000506154 PELP1Q8IZL8 1130 aaKnown RBP4.16□□□□□ -1.74
NEDD4-205ENST00000506154 ZBTB22O15209 634 aa4.16□□□□□ -1.74
NEDD4-205ENST00000506154 RSF1Q96T23 1441 aaPredicted RBP4.16□□□□□ -1.74
NEDD4-205ENST00000506154 CECR2Q9BXF3 1484 aa4.15□□□□□ -1.74
NEDD4-205ENST00000506154 WDR97A6NE52 1622 aa4.15□□□□□ -1.74
NEDD4-205ENST00000506154 FOXD1Q16676 465 aa4.13□□□□□ -1.75
NEDD4-205ENST00000506154 ATAD2BQ9ULI0 1458 aa4.12□□□□□ -1.75
NEDD4-205ENST00000506154 WIZO95785 1651 aa4.11□□□□□ -1.75
NEDD4-205ENST00000506154 BIVM-ERCC5R4GMW8 1640 aa4.11□□□□□ -1.75
NEDD4-205ENST00000506154 TTBK1Q5TCY1 1321 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-205ENST00000506154 MYT1Q01538 1121 aa4.1□□□□□ -1.75
NEDD4-205ENST00000506154 DNAJC5BQ9UF47 199 aa4.07□□□□□ -1.76
NEDD4-205ENST00000506154 CC2D2AQ9P2K1 1620 aa4.07□□□□□ -1.76
NEDD4-205ENST00000506154 HAP1P54257 671 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-205ENST00000506154 THOC2Q8NI27 1593 aaKnown RBP4.06□□□□□ -1.76
NEDD4-205ENST00000506154 FKBP8Q14318 412 aa4.06□□□□□ -1.76
NEDD4-205ENST00000506154 APLP2Q06481 763 aa4.06□□□□□ -1.76
NEDD4-205ENST00000506154 CFTRP13569 1480 aa4.05□□□□□ -1.76
NEDD4-205ENST00000506154 NPM3O75607 178 aaKnown RBP4.05□□□□□ -1.76
NEDD4-205ENST00000506154 PIAS4Q8N2W9 510 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-205ENST00000506154 PPP4R3CPQ6ZMV5 832 aa4.02□□□□□ -1.77
NEDD4-205ENST00000506154 TARBP1Q13395 1621 aaKnown RBP4.01□□□□□ -1.77
NEDD4-205ENST00000506154 LAMC3Q9Y6N6 1575 aa4.01□□□□□ -1.77
NEDD4-205ENST00000506154 WDR62O43379 1518 aa4□□□□□ -1.77
NEDD4-205ENST00000506154 TOP2BQ02880 1626 aa4□□□□□ -1.77
NEDD4-205ENST00000506154 ABCA5Q8WWZ7 1642 aa4□□□□□ -1.77
NEDD4-205ENST00000506154 CCDC88BA6NC98 1476 aa3.99□□□□□ -1.77
NEDD4-205ENST00000506154 SYNJ1O43426 1573 aa3.96□□□□□ -1.78
NEDD4-205ENST00000506154 TPRNQ4KMQ1 711 aa3.95□□□□□ -1.78
NEDD4-205ENST00000506154 MAPK8IP2Q13387 824 aaPredicted RBP3.95□□□□□ -1.78
NEDD4-205ENST00000506154 KIF21AQ7Z4S6 1674 aa3.94□□□□□ -1.78
NEDD4-205ENST00000506154 CUX1P39880 1505 aa3.93□□□□□ -1.78
NEDD4-205ENST00000506154 SHROOM2Q13796 1616 aa3.93□□□□□ -1.78
NEDD4-205ENST00000506154 TRIM41Q8WV44 630 aa3.92□□□□□ -1.78
NEDD4-205ENST00000506154 CUX2O14529 1486 aa3.92□□□□□ -1.78
NEDD4-205ENST00000506154 DNMBPQ6XZF7 1577 aa3.92□□□□□ -1.78
NEDD4-205ENST00000506154 AMER1Q5JTC6 1135 aaPredicted RBP3.91□□□□□ -1.78
NEDD4-205ENST00000506154 URB2Q14146 1524 aaKnown RBP3.91□□□□□ -1.78
NEDD4-205ENST00000506154 ABCA10Q8WWZ4 1543 aa3.9□□□□□ -1.79
NEDD4-205ENST00000506154 DCAF8L1A6NGE4 600 aa3.89□□□□□ -1.79
NEDD4-205ENST00000506154 TULP1O00294 542 aaPredicted RBP3.89□□□□□ -1.79
NEDD4-205ENST00000506154 BAZ1BQ9UIG0 1483 aaKnown RBP3.89□□□□□ -1.79
NEDD4-205ENST00000506154 KIF21BO75037 1637 aa3.89□□□□□ -1.79
NEDD4-205ENST00000506154 CFAP44Q96MT7 982 aa3.88□□□□□ -1.79
NEDD4-205ENST00000506154 ERICH3Q5RHP9 1530 aa3.88□□□□□ -1.79
NEDD4-205ENST00000506154 SAMD9Q5K651 1589 aa3.87□□□□□ -1.79
NEDD4-205ENST00000506154 TIMELESSQ9UNS1 1208 aa3.87□□□□□ -1.79
NEDD4-205ENST00000506154 PRXQ9BXM0 1461 aa3.87□□□□□ -1.79
NEDD4-205ENST00000506154 FBLN2P98095 1184 aa3.86□□□□□ -1.79
NEDD4-205ENST00000506154 CLASP1Q7Z460 1538 aa3.86□□□□□ -1.79
NEDD4-205ENST00000506154 CADPSQ9ULU8 1353 aa3.85□□□□□ -1.79
NEDD4-205ENST00000506154 TOPBP1Q92547 1522 aa3.84□□□□□ -1.79
NEDD4-205ENST00000506154 ADAMTS12P58397 1594 aa3.84□□□□□ -1.79
NEDD4-205ENST00000506154 PBRM1Q86U86 1689 aa3.84□□□□□ -1.79
NEDD4-205ENST00000506154 LRRIQ1Q96JM4 1722 aa3.84□□□□□ -1.8
NEDD4-205ENST00000506154 ARID3AQ99856 593 aa3.83□□□□□ -1.8
NEDD4-205ENST00000506154 CUL7Q14999 1698 aa3.82□□□□□ -1.8
NEDD4-205ENST00000506154 ARHGEF11O15085 1522 aa3.82□□□□□ -1.8
NEDD4-205ENST00000506154 RUSC2Q8N2Y8 1516 aa3.82□□□□□ -1.8
NEDD4-205ENST00000506154 HRCP23327 699 aa3.82□□□□□ -1.8
NEDD4-205ENST00000506154 POLA1P09884 1462 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-205ENST00000506154 ABCC8Q09428 1581 aa3.81□□□□□ -1.8
NEDD4-205ENST00000506154 DAXXQ9UER7 740 aaPredicted RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms