RNA–Protein interactions for RNA: ENST00000506055.5

PPARGC1A-204, Transcript of PPARG coactivator 1 alpha, humanhuman

TSL 1 (best)

Gene PPARGC1A, Length 2,627 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPARGC1A-204ENST00000506055 NISCHQ9Y2I1 1504 aa15.66■□□□□ 0.1
PPARGC1A-204ENST00000506055 SHROOM4Q9ULL8 1493 aa13.49□□□□□ -0.25
PPARGC1A-204ENST00000506055 SUPT5HO00267 1087 aaKnown RBP13.26□□□□□ -0.29
PPARGC1A-204ENST00000506055 CCDC180Q9P1Z9 1646 aa13.24□□□□□ -0.29
PPARGC1A-204ENST00000506055 ZCCHC6Q5VYS8 1495 aaKnown RBP13.23□□□□□ -0.29
PPARGC1A-204ENST00000506055 DCAF8L2P0C7V8 631 aa13.16□□□□□ -0.3
PPARGC1A-204ENST00000506055 CHIC1Q5VXU3 224 aa12.84□□□□□ -0.35
PPARGC1A-204ENST00000506055 DCAF1Q9Y4B6 1507 aa12.79□□□□□ -0.36
PPARGC1A-204ENST00000506055 MYO15BQ96JP2 1530 aa12.77□□□□□ -0.37
PPARGC1A-204ENST00000506055 LOC105371045A0A1W2PR82 267 aa12.52□□□□□ -0.4
PPARGC1A-204ENST00000506055 PCGF6Q9BYE7 350 aa12.52□□□□□ -0.4
PPARGC1A-204ENST00000506055 SCRIBQ14160 1630 aa12.5□□□□□ -0.41
PPARGC1A-204ENST00000506055 ABCC9O60706 1549 aa12.48□□□□□ -0.41
PPARGC1A-204ENST00000506055 HRCP23327 699 aa12.47□□□□□ -0.41
PPARGC1A-204ENST00000506055 RSF1Q96T23 1441 aaPredicted RBP12.42□□□□□ -0.42
PPARGC1A-204ENST00000506055 TRIM41Q8WV44 630 aa12.33□□□□□ -0.44
PPARGC1A-204ENST00000506055 RB1CC1Q8TDY2 1594 aa12.28□□□□□ -0.44
PPARGC1A-204ENST00000506055 NACADO15069 1562 aa12.28□□□□□ -0.44
PPARGC1A-204ENST00000506055 PPARGC1BQ86YN6 1023 aaKnown RBP12.27□□□□□ -0.45
PPARGC1A-204ENST00000506055 FAM9AQ8IZU1 332 aaPredicted RBP12.26□□□□□ -0.45
PPARGC1A-204ENST00000506055 CECR2Q9BXF3 1484 aa12.26□□□□□ -0.45
PPARGC1A-204ENST00000506055 TRIM26Q12899 539 aaPredicted RBP12.24□□□□□ -0.45
PPARGC1A-204ENST00000506055 EHMT2Q96KQ7 1210 aa12.21□□□□□ -0.45
PPARGC1A-204ENST00000506055 MROH2BQ7Z745 1585 aa12.2□□□□□ -0.46
PPARGC1A-204ENST00000506055 WIZO95785 1651 aa12.13□□□□□ -0.47
PPARGC1A-204ENST00000506055 BAZ1AQ9NRL2 1556 aaPredicted RBP12.02□□□□□ -0.49
PPARGC1A-204ENST00000506055 ZEB1P37275 1124 aaPredicted RBP11.95□□□□□ -0.5
PPARGC1A-204ENST00000506055 AEBP2Q6ZN18 517 aaPredicted RBP11.94□□□□□ -0.5
PPARGC1A-204ENST00000506055 SMARCA4P51532 1647 aa11.91□□□□□ -0.5
PPARGC1A-204ENST00000506055 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
PPARGC1A-204ENST00000506055 TOP2AP11388 1531 aaKnown RBP11.91□□□□□ -0.5
PPARGC1A-204ENST00000506055 EIF4G1Q04637 1599 aaKnown RBP11.9□□□□□ -0.5
PPARGC1A-204ENST00000506055 ABCC8Q09428 1581 aa11.89□□□□□ -0.51
PPARGC1A-204ENST00000506055 PABPN1Q86U42 306 aaKnown RBP eCLIP11.89□□□□□ -0.51
PPARGC1A-204ENST00000506055 UNC13AQ9UPW8 1703 aa11.88□□□□□ -0.51
PPARGC1A-204ENST00000506055 SMARCA2P51531 1590 aa11.85□□□□□ -0.51
PPARGC1A-204ENST00000506055 TTBK1Q5TCY1 1321 aaPredicted RBP11.81□□□□□ -0.52
PPARGC1A-204ENST00000506055 SOGA1O94964 1423 aa11.8□□□□□ -0.52
PPARGC1A-204ENST00000506055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.78□□□□□ -0.52
PPARGC1A-204ENST00000506055 UBTFP17480 764 aaKnown RBP11.75□□□□□ -0.53
PPARGC1A-204ENST00000506055 CCER1Q8TC90 406 aaPredicted RBP11.75□□□□□ -0.53
PPARGC1A-204ENST00000506055 CSRNP3Q8WYN3 585 aa11.75□□□□□ -0.53
PPARGC1A-204ENST00000506055 BICRAQ9NZM4 1560 aa11.75□□□□□ -0.53
PPARGC1A-204ENST00000506055 CEP162Q5TB80 1403 aa11.74□□□□□ -0.53
PPARGC1A-204ENST00000506055 RUSC2Q8N2Y8 1516 aa11.74□□□□□ -0.53
PPARGC1A-204ENST00000506055 TNIKQ9UKE5 1360 aa11.71□□□□□ -0.54
PPARGC1A-204ENST00000506055 WRNQ14191 1432 aaPredicted RBP eCLIP11.69□□□□□ -0.54
PPARGC1A-204ENST00000506055 EEA1Q15075 1411 aa11.68□□□□□ -0.54
PPARGC1A-204ENST00000506055 PEG3Q9GZU2 1588 aa11.64□□□□□ -0.55
PPARGC1A-204ENST00000506055 GOLGA3Q08378 1498 aa11.63□□□□□ -0.55
PPARGC1A-204ENST00000506055 ATAD2BQ9ULI0 1458 aa11.62□□□□□ -0.55
PPARGC1A-204ENST00000506055 BAZ1BQ9UIG0 1483 aaKnown RBP11.6□□□□□ -0.55
PPARGC1A-204ENST00000506055 SYNJ1O43426 1573 aa11.6□□□□□ -0.55
PPARGC1A-204ENST00000506055 RANGAP1P46060 587 aaPredicted RBP11.57□□□□□ -0.56
PPARGC1A-204ENST00000506055 CEP164Q9UPV0 1460 aa11.56□□□□□ -0.56
PPARGC1A-204ENST00000506055 SCAF1Q9H7N4 1312 aaKnown RBP11.53□□□□□ -0.56
PPARGC1A-204ENST00000506055 CLIP1P30622 1438 aa11.52□□□□□ -0.57
PPARGC1A-204ENST00000506055 DIEXFQ68CQ4 756 aaKnown RBP11.52□□□□□ -0.57
PPARGC1A-204ENST00000506055 HNRNPUL2Q1KMD3 747 aaKnown RBP11.51□□□□□ -0.57
PPARGC1A-204ENST00000506055 KIF21BO75037 1637 aa11.51□□□□□ -0.57
PPARGC1A-204ENST00000506055 RAPGEF2Q9Y4G8 1499 aa11.5□□□□□ -0.57
PPARGC1A-204ENST00000506055 APLP2Q06481 763 aa11.49□□□□□ -0.57
PPARGC1A-204ENST00000506055 VPS8Q8N3P4 1428 aa11.45□□□□□ -0.58
PPARGC1A-204ENST00000506055 TOP2BQ02880 1626 aa11.44□□□□□ -0.58
PPARGC1A-204ENST00000506055 ZNF316A6NFI3 1004 aaPredicted RBP11.4□□□□□ -0.58
PPARGC1A-204ENST00000506055 NEUROD1Q13562 356 aa11.4□□□□□ -0.58
PPARGC1A-204ENST00000506055 ACIN1Q9UKV3 1341 aaKnown RBP11.4□□□□□ -0.58
PPARGC1A-204ENST00000506055 NCAPD3P42695 1498 aa11.38□□□□□ -0.59
PPARGC1A-204ENST00000506055 BIVM-ERCC5R4GMW8 1640 aa11.37□□□□□ -0.59
PPARGC1A-204ENST00000506055 CENPBP07199 599 aaPredicted RBP11.35□□□□□ -0.59
PPARGC1A-204ENST00000506055 CUX1P39880 1505 aa11.35□□□□□ -0.59
PPARGC1A-204ENST00000506055 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
PPARGC1A-204ENST00000506055 PRXQ9BXM0 1461 aa11.34□□□□□ -0.59
PPARGC1A-204ENST00000506055 KANK4Q5T7N3 995 aaPredicted RBP11.32□□□□□ -0.6
PPARGC1A-204ENST00000506055 ERICH3Q5RHP9 1530 aa11.32□□□□□ -0.6
PPARGC1A-204ENST00000506055 KIF27Q86VH2 1401 aa11.32□□□□□ -0.6
PPARGC1A-204ENST00000506055 GTF3C3Q9Y5Q9 886 aa11.31□□□□□ -0.6
PPARGC1A-204ENST00000506055 CFTRP13569 1480 aa11.3□□□□□ -0.6
PPARGC1A-204ENST00000506055 ARAP1Q96P48 1450 aa11.3□□□□□ -0.6
PPARGC1A-204ENST00000506055 YTHDC1Q96MU7 727 aaKnown RBP11.29□□□□□ -0.6
PPARGC1A-204ENST00000506055 MIER1Q8N108 512 aa11.27□□□□□ -0.61
PPARGC1A-204ENST00000506055 PELP1Q8IZL8 1130 aaKnown RBP11.24□□□□□ -0.61
PPARGC1A-204ENST00000506055 ITGAEP38570 1179 aa11.23□□□□□ -0.61
PPARGC1A-204ENST00000506055 CUX2O14529 1486 aa11.21□□□□□ -0.61
PPARGC1A-204ENST00000506055 DHX57Q6P158 1386 aaKnown RBP11.21□□□□□ -0.61
PPARGC1A-204ENST00000506055 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
PPARGC1A-204ENST00000506055 IGF1RP08069 1367 aa11.21□□□□□ -0.62
PPARGC1A-204ENST00000506055 CADPSQ9ULU8 1353 aa11.2□□□□□ -0.62
PPARGC1A-204ENST00000506055 CLSPNQ9HAW4 1339 aa11.18□□□□□ -0.62
PPARGC1A-204ENST00000506055 RRBP1Q9P2E9 1410 aaKnown RBP11.17□□□□□ -0.62
PPARGC1A-204ENST00000506055 CCNB3Q8WWL7 1395 aa11.17□□□□□ -0.62
PPARGC1A-204ENST00000506055 CARMIL1Q5VZK9 1371 aa11.17□□□□□ -0.62
PPARGC1A-204ENST00000506055 FGD5Q6ZNL6 1462 aa11.15□□□□□ -0.62
PPARGC1A-204ENST00000506055 P3H3Q8IVL6 736 aa11.15□□□□□ -0.62
PPARGC1A-204ENST00000506055 PRDM2Q13029 1718 aa11.14□□□□□ -0.63
PPARGC1A-204ENST00000506055 ATP1B4Q9UN42 357 aaPredicted RBP11.14□□□□□ -0.63
PPARGC1A-204ENST00000506055 CC2D2AQ9P2K1 1620 aa11.1□□□□□ -0.63
PPARGC1A-204ENST00000506055 FANCD2Q9BXW9 1451 aa11.09□□□□□ -0.63
PPARGC1A-204ENST00000506055 FAM50AQ14320 339 aaKnown RBP11.08□□□□□ -0.64
PPARGC1A-204ENST00000506055 TIAM1Q13009 1591 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms