RNA–Protein interactions for RNA: ENST00000505814.5

PTPN20-215, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN20, Length 1,244 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-215ENST00000505814 AEBP2Q6ZN18 517 aaPredicted RBP29.26■■■□□ 2.27
PTPN20-215ENST00000505814 CHIC1Q5VXU3 224 aa28■■■□□ 2.07
PTPN20-215ENST00000505814 SENP3Q9H4L4 574 aaPredicted RBP25■■□□□ 1.59
PTPN20-215ENST00000505814 PHF23Q9BUL5 403 aaPredicted RBP24.69■■□□□ 1.54
PTPN20-215ENST00000505814 FOXD1Q16676 465 aa23.24■■□□□ 1.31
PTPN20-215ENST00000505814 NISCHQ9Y2I1 1504 aa22.53■■□□□ 1.2
PTPN20-215ENST00000505814 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
PTPN20-215ENST00000505814 PPP6R1Q9UPN7 881 aa21.86■■□□□ 1.09
PTPN20-215ENST00000505814 ADRA2BP18089 450 aa21.81■■□□□ 1.08
PTPN20-215ENST00000505814 PIAS4Q8N2W9 510 aaPredicted RBP21.78■■□□□ 1.08
PTPN20-215ENST00000505814 MSH5O43196 834 aa21.73■■□□□ 1.07
PTPN20-215ENST00000505814 POTEDQ86YR6 584 aa20.85■□□□□ 0.93
PTPN20-215ENST00000505814 CCDC180Q9P1Z9 1646 aa20.17■□□□□ 0.82
PTPN20-215ENST00000505814 SCAF1Q9H7N4 1312 aaKnown RBP20.03■□□□□ 0.8
PTPN20-215ENST00000505814 MAPK8IP2Q13387 824 aaPredicted RBP19.97■□□□□ 0.79
PTPN20-215ENST00000505814 DMRT2Q9Y5R5 561 aa19.83■□□□□ 0.77
PTPN20-215ENST00000505814 PPP4R3CPQ6ZMV5 832 aa19.71■□□□□ 0.75
PTPN20-215ENST00000505814 ABCC9O60706 1549 aa19.57■□□□□ 0.72
PTPN20-215ENST00000505814 CNKSR2Q8WXI2 1034 aa19.32■□□□□ 0.68
PTPN20-215ENST00000505814 HOXD11P31277 338 aaPredicted RBP19.17■□□□□ 0.66
PTPN20-215ENST00000505814 RNF216Q9NWF9 866 aaPredicted RBP19.09■□□□□ 0.65
PTPN20-215ENST00000505814 NCBP3Q53F19 620 aaKnown RBP19.06■□□□□ 0.64
PTPN20-215ENST00000505814 DCAF8L1A6NGE4 600 aa19.04■□□□□ 0.64
PTPN20-215ENST00000505814 NACADO15069 1562 aa18.9■□□□□ 0.62
PTPN20-215ENST00000505814 RB1CC1Q8TDY2 1594 aa18.9■□□□□ 0.62
PTPN20-215ENST00000505814 MYO15BQ96JP2 1530 aa18.9■□□□□ 0.62
PTPN20-215ENST00000505814 ZCCHC6Q5VYS8 1495 aaKnown RBP18.82■□□□□ 0.6
PTPN20-215ENST00000505814 DCAF1Q9Y4B6 1507 aa18.76■□□□□ 0.59
PTPN20-215ENST00000505814 NPM3O75607 178 aaKnown RBP18.72■□□□□ 0.59
PTPN20-215ENST00000505814 DNAJC5BQ9UF47 199 aa18.57■□□□□ 0.56
PTPN20-215ENST00000505814 UNC13AQ9UPW8 1703 aa18.56■□□□□ 0.56
PTPN20-215ENST00000505814 CACNB1Q02641 598 aaPredicted RBP18.54■□□□□ 0.56
PTPN20-215ENST00000505814 KCNA4P22459 653 aa18.52■□□□□ 0.56
PTPN20-215ENST00000505814 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
PTPN20-215ENST00000505814 BICRAQ9NZM4 1560 aa18.45■□□□□ 0.54
PTPN20-215ENST00000505814 DCAF8L2P0C7V8 631 aa18.37■□□□□ 0.53
PTPN20-215ENST00000505814 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.31■□□□□ 0.52
PTPN20-215ENST00000505814 C1QBPQ07021 282 aaKnown RBP18.3■□□□□ 0.52
PTPN20-215ENST00000505814 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
PTPN20-215ENST00000505814 SCRIBQ14160 1630 aa18.22■□□□□ 0.51
PTPN20-215ENST00000505814 PABPN1Q86U42 306 aaKnown RBP eCLIP18.15■□□□□ 0.5
PTPN20-215ENST00000505814 EIF4G1Q04637 1599 aaKnown RBP17.89■□□□□ 0.45
PTPN20-215ENST00000505814 U3KPZ7 1027 aaPredicted RBP17.89■□□□□ 0.45
PTPN20-215ENST00000505814 SLC4A2P04920 1241 aa17.82■□□□□ 0.44
PTPN20-215ENST00000505814 CC2D2AQ9P2K1 1620 aa17.8■□□□□ 0.44
PTPN20-215ENST00000505814 DNAJC5Q9H3Z4 198 aa17.73■□□□□ 0.43
PTPN20-215ENST00000505814 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
PTPN20-215ENST00000505814 CAPN15O75808 1086 aa17.58■□□□□ 0.4
PTPN20-215ENST00000505814 SPINK5Q9NQ38 1064 aaPredicted RBP17.57■□□□□ 0.4
PTPN20-215ENST00000505814 SLC4A1APQ9BWU0 796 aaKnown RBP17.55■□□□□ 0.4
PTPN20-215ENST00000505814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.53■□□□□ 0.4
PTPN20-215ENST00000505814 HNRNPUL2Q1KMD3 747 aaKnown RBP17.53■□□□□ 0.4
PTPN20-215ENST00000505814 SMARCA4P51532 1647 aa17.52■□□□□ 0.4
PTPN20-215ENST00000505814 APLP2Q06481 763 aa17.5■□□□□ 0.39
PTPN20-215ENST00000505814 PEG3Q9GZU2 1588 aa17.46■□□□□ 0.39
PTPN20-215ENST00000505814 BAZ1AQ9NRL2 1556 aaPredicted RBP17.46■□□□□ 0.39
PTPN20-215ENST00000505814 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
PTPN20-215ENST00000505814 SAMD1Q6SPF0 538 aaPredicted RBP17.42■□□□□ 0.38
PTPN20-215ENST00000505814 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
PTPN20-215ENST00000505814 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
PTPN20-215ENST00000505814 DSG3P32926 999 aa17.4■□□□□ 0.38
PTPN20-215ENST00000505814 SMARCA2P51531 1590 aa17.39■□□□□ 0.37
PTPN20-215ENST00000505814 MYCNP04198 464 aaPredicted RBP17.34■□□□□ 0.37
PTPN20-215ENST00000505814 TRHP20396 242 aaPredicted RBP17.34■□□□□ 0.37
PTPN20-215ENST00000505814 MROH2BQ7Z745 1585 aa17.34■□□□□ 0.37
PTPN20-215ENST00000505814 ZNF219Q9P2Y4 722 aaPredicted RBP17.32■□□□□ 0.36
PTPN20-215ENST00000505814 FOXD4L1Q9NU39 408 aa17.25■□□□□ 0.35
PTPN20-215ENST00000505814 BAZ1BQ9UIG0 1483 aaKnown RBP17.19■□□□□ 0.34
PTPN20-215ENST00000505814 ABCB7O75027 752 aa17.16■□□□□ 0.34
PTPN20-215ENST00000505814 WIZO95785 1651 aa17.13■□□□□ 0.33
PTPN20-215ENST00000505814 RSF1Q96T23 1441 aaPredicted RBP17.09■□□□□ 0.33
PTPN20-215ENST00000505814 LAMC3Q9Y6N6 1575 aa17■□□□□ 0.31
PTPN20-215ENST00000505814 TOP2AP11388 1531 aaKnown RBP17■□□□□ 0.31
PTPN20-215ENST00000505814 ZBTB22O15209 634 aa16.99■□□□□ 0.31
PTPN20-215ENST00000505814 NESP48681 1621 aa16.96■□□□□ 0.31
PTPN20-215ENST00000505814 POLA2Q14181 598 aa16.92■□□□□ 0.3
PTPN20-215ENST00000505814 THOC2Q8NI27 1593 aaKnown RBP16.88■□□□□ 0.29
PTPN20-215ENST00000505814 ATF5Q9Y2D1 282 aaPredicted RBP16.87■□□□□ 0.29
PTPN20-215ENST00000505814 CUX2O14529 1486 aa16.85■□□□□ 0.29
PTPN20-215ENST00000505814 CADPSQ9ULU8 1353 aa16.84■□□□□ 0.29
PTPN20-215ENST00000505814 KIF21AQ7Z4S6 1674 aa16.83■□□□□ 0.28
PTPN20-215ENST00000505814 ERCC6Q03468 1493 aa16.81■□□□□ 0.28
PTPN20-215ENST00000505814 CFTRP13569 1480 aa16.8■□□□□ 0.28
PTPN20-215ENST00000505814 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.27
PTPN20-215ENST00000505814 PRDM2Q13029 1718 aa16.74■□□□□ 0.27
PTPN20-215ENST00000505814 ATXN8OSP0DMR3 200 aa16.73■□□□□ 0.27
PTPN20-215ENST00000505814 CCDC88BA6NC98 1476 aa16.73■□□□□ 0.27
PTPN20-215ENST00000505814 WDR62O43379 1518 aa16.7■□□□□ 0.26
PTPN20-215ENST00000505814 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
PTPN20-215ENST00000505814 MRC2Q9UBG0 1479 aa16.67■□□□□ 0.26
PTPN20-215ENST00000505814 FANCD2Q9BXW9 1451 aa16.66■□□□□ 0.26
PTPN20-215ENST00000505814 RBM42Q9BTD8 480 aaKnown RBP16.65■□□□□ 0.26
PTPN20-215ENST00000505814 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
PTPN20-215ENST00000505814 ZBTB12Q9Y330 459 aaPredicted RBP16.62■□□□□ 0.25
PTPN20-215ENST00000505814 URB2Q14146 1524 aaKnown RBP16.55■□□□□ 0.24
PTPN20-215ENST00000505814 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
PTPN20-215ENST00000505814 TOPBP1Q92547 1522 aa16.42■□□□□ 0.22
PTPN20-215ENST00000505814 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
PTPN20-215ENST00000505814 POTEHQ6S545 545 aa16.4■□□□□ 0.22
PTPN20-215ENST00000505814 ABCC8Q09428 1581 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms