RNA–Protein interactions for RNA: ENST00000504875.5

CSF1R-203, Transcript of colony stimulating factor 1 receptor, humanhuman

TSL 1 (best)

Gene CSF1R, Length 3,697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSF1R-203ENST00000504875 NISCHQ9Y2I1 1504 aa19.83■□□□□ 0.77
CSF1R-203ENST00000504875 SHROOM4Q9ULL8 1493 aa17.35■□□□□ 0.37
CSF1R-203ENST00000504875 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
CSF1R-203ENST00000504875 SUPT5HO00267 1087 aaKnown RBP17.04■□□□□ 0.32
CSF1R-203ENST00000504875 CCDC180Q9P1Z9 1646 aa16.74■□□□□ 0.27
CSF1R-203ENST00000504875 ZCCHC6Q5VYS8 1495 aaKnown RBP16.68■□□□□ 0.26
CSF1R-203ENST00000504875 CHIC1Q5VXU3 224 aa16.18■□□□□ 0.18
CSF1R-203ENST00000504875 ABCC9O60706 1549 aa16.13■□□□□ 0.17
CSF1R-203ENST00000504875 DCAF1Q9Y4B6 1507 aa16.06■□□□□ 0.16
CSF1R-203ENST00000504875 SCRIBQ14160 1630 aa16■□□□□ 0.15
CSF1R-203ENST00000504875 MYO15BQ96JP2 1530 aa15.88■□□□□ 0.13
CSF1R-203ENST00000504875 EHMT2Q96KQ7 1210 aa15.88■□□□□ 0.13
CSF1R-203ENST00000504875 LOC105371045A0A1W2PR82 267 aa15.85■□□□□ 0.13
CSF1R-203ENST00000504875 FAM9AQ8IZU1 332 aaPredicted RBP15.84■□□□□ 0.13
CSF1R-203ENST00000504875 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
CSF1R-203ENST00000504875 PCGF6Q9BYE7 350 aa15.8■□□□□ 0.12
CSF1R-203ENST00000504875 RSF1Q96T23 1441 aaPredicted RBP15.72■□□□□ 0.11
CSF1R-203ENST00000504875 NACADO15069 1562 aa15.66■□□□□ 0.1
CSF1R-203ENST00000504875 CECR2Q9BXF3 1484 aa15.59■□□□□ 0.09
CSF1R-203ENST00000504875 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
CSF1R-203ENST00000504875 RB1CC1Q8TDY2 1594 aa15.52■□□□□ 0.07
CSF1R-203ENST00000504875 HRCP23327 699 aa15.46■□□□□ 0.07
CSF1R-203ENST00000504875 MROH2BQ7Z745 1585 aa15.46■□□□□ 0.07
CSF1R-203ENST00000504875 TRIM26Q12899 539 aaPredicted RBP15.37■□□□□ 0.05
CSF1R-203ENST00000504875 PPARGC1BQ86YN6 1023 aaKnown RBP15.36■□□□□ 0.05
CSF1R-203ENST00000504875 PELP1Q8IZL8 1130 aaKnown RBP15.36■□□□□ 0.05
CSF1R-203ENST00000504875 WIZO95785 1651 aa15.35■□□□□ 0.05
CSF1R-203ENST00000504875 TTBK1Q5TCY1 1321 aaPredicted RBP15.3■□□□□ 0.04
CSF1R-203ENST00000504875 BAZ1AQ9NRL2 1556 aaPredicted RBP15.28■□□□□ 0.04
CSF1R-203ENST00000504875 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
CSF1R-203ENST00000504875 RANGAP1P46060 587 aaPredicted RBP15.12■□□□□ 0.01
CSF1R-203ENST00000504875 SMARCA4P51532 1647 aa15.11■□□□□ 0.01
CSF1R-203ENST00000504875 CCDC88BA6NC98 1476 aa15.1■□□□□ 0.01
CSF1R-203ENST00000504875 ABCC8Q09428 1581 aa15.08■□□□□ 0
CSF1R-203ENST00000504875 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
CSF1R-203ENST00000504875 UNC13AQ9UPW8 1703 aa15.02■□□□□ -0
CSF1R-203ENST00000504875 ZEB1P37275 1124 aaPredicted RBP15□□□□□ -0.01
CSF1R-203ENST00000504875 CSRNP3Q8WYN3 585 aa15□□□□□ -0.01
CSF1R-203ENST00000504875 CCER1Q8TC90 406 aaPredicted RBP14.97□□□□□ -0.01
CSF1R-203ENST00000504875 SMARCA2P51531 1590 aa14.96□□□□□ -0.01
CSF1R-203ENST00000504875 SOGA1O94964 1423 aa14.95□□□□□ -0.02
CSF1R-203ENST00000504875 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.93□□□□□ -0.02
CSF1R-203ENST00000504875 BAZ1BQ9UIG0 1483 aaKnown RBP14.92□□□□□ -0.02
CSF1R-203ENST00000504875 BICRAQ9NZM4 1560 aa14.91□□□□□ -0.02
CSF1R-203ENST00000504875 APLP2Q06481 763 aa14.91□□□□□ -0.02
CSF1R-203ENST00000504875 WRNQ14191 1432 aaPredicted RBP eCLIP14.89□□□□□ -0.03
CSF1R-203ENST00000504875 MYT1Q01538 1121 aa14.85□□□□□ -0.03
CSF1R-203ENST00000504875 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
CSF1R-203ENST00000504875 CEP162Q5TB80 1403 aa14.84□□□□□ -0.03
CSF1R-203ENST00000504875 RUSC2Q8N2Y8 1516 aa14.83□□□□□ -0.03
CSF1R-203ENST00000504875 EIF4G1Q04637 1599 aaKnown RBP14.77□□□□□ -0.04
CSF1R-203ENST00000504875 EEA1Q15075 1411 aa14.77□□□□□ -0.04
CSF1R-203ENST00000504875 TNIKQ9UKE5 1360 aa14.76□□□□□ -0.05
CSF1R-203ENST00000504875 HNRNPUL2Q1KMD3 747 aaKnown RBP14.76□□□□□ -0.05
CSF1R-203ENST00000504875 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
CSF1R-203ENST00000504875 GOLGA3Q08378 1498 aa14.74□□□□□ -0.05
CSF1R-203ENST00000504875 CEP164Q9UPV0 1460 aa14.65□□□□□ -0.06
CSF1R-203ENST00000504875 CLIP1P30622 1438 aa14.65□□□□□ -0.06
CSF1R-203ENST00000504875 SYNJ1O43426 1573 aa14.64□□□□□ -0.07
CSF1R-203ENST00000504875 PEG3Q9GZU2 1588 aa14.63□□□□□ -0.07
CSF1R-203ENST00000504875 ATP1B4Q9UN42 357 aaPredicted RBP14.61□□□□□ -0.07
CSF1R-203ENST00000504875 RAPGEF2Q9Y4G8 1499 aa14.56□□□□□ -0.08
CSF1R-203ENST00000504875 ITGAEP38570 1179 aa14.54□□□□□ -0.08
CSF1R-203ENST00000504875 NCAPD3P42695 1498 aa14.52□□□□□ -0.09
CSF1R-203ENST00000504875 KIF27Q86VH2 1401 aa14.48□□□□□ -0.09
CSF1R-203ENST00000504875 DIEXFQ68CQ4 756 aaKnown RBP14.46□□□□□ -0.09
CSF1R-203ENST00000504875 P3H3Q8IVL6 736 aa14.46□□□□□ -0.09
CSF1R-203ENST00000504875 VPS8Q8N3P4 1428 aa14.46□□□□□ -0.09
CSF1R-203ENST00000504875 HMGXB3Q12766 1538 aa14.42□□□□□ -0.1
CSF1R-203ENST00000504875 KIF21BO75037 1637 aa14.42□□□□□ -0.1
CSF1R-203ENST00000504875 TOP2BQ02880 1626 aa14.42□□□□□ -0.1
CSF1R-203ENST00000504875 CUX2O14529 1486 aa14.41□□□□□ -0.1
CSF1R-203ENST00000504875 CADPSQ9ULU8 1353 aa14.39□□□□□ -0.11
CSF1R-203ENST00000504875 CUX1P39880 1505 aa14.38□□□□□ -0.11
CSF1R-203ENST00000504875 CFTRP13569 1480 aa14.38□□□□□ -0.11
CSF1R-203ENST00000504875 KANK4Q5T7N3 995 aaPredicted RBP14.36□□□□□ -0.11
CSF1R-203ENST00000504875 GTF3C3Q9Y5Q9 886 aa14.36□□□□□ -0.11
CSF1R-203ENST00000504875 YTHDC1Q96MU7 727 aaKnown RBP14.36□□□□□ -0.11
CSF1R-203ENST00000504875 ZNF316A6NFI3 1004 aaPredicted RBP14.33□□□□□ -0.12
CSF1R-203ENST00000504875 FAM50AQ14320 339 aaKnown RBP14.32□□□□□ -0.12
CSF1R-203ENST00000504875 CARMIL1Q5VZK9 1371 aa14.31□□□□□ -0.12
CSF1R-203ENST00000504875 ACIN1Q9UKV3 1341 aaKnown RBP14.3□□□□□ -0.12
CSF1R-203ENST00000504875 CENPBP07199 599 aaPredicted RBP14.3□□□□□ -0.12
CSF1R-203ENST00000504875 NEUROD1Q13562 356 aa14.29□□□□□ -0.12
CSF1R-203ENST00000504875 PRXQ9BXM0 1461 aa14.29□□□□□ -0.12
CSF1R-203ENST00000504875 CC2D2AQ9P2K1 1620 aa14.29□□□□□ -0.12
CSF1R-203ENST00000504875 BIVM-ERCC5R4GMW8 1640 aa14.28□□□□□ -0.12
CSF1R-203ENST00000504875 FGD5Q6ZNL6 1462 aa14.26□□□□□ -0.13
CSF1R-203ENST00000504875 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
CSF1R-203ENST00000504875 IGF1RP08069 1367 aa14.25□□□□□ -0.13
CSF1R-203ENST00000504875 ERICH3Q5RHP9 1530 aa14.24□□□□□ -0.13
CSF1R-203ENST00000504875 ARAP1Q96P48 1450 aa14.23□□□□□ -0.13
CSF1R-203ENST00000504875 NESP48681 1621 aa14.21□□□□□ -0.13
CSF1R-203ENST00000504875 RAD54L2Q9Y4B4 1467 aa14.2□□□□□ -0.14
CSF1R-203ENST00000504875 ARHGAP35Q9NRY4 1499 aa14.16□□□□□ -0.14
CSF1R-203ENST00000504875 TDRD9Q8NDG6 1382 aaKnown RBP14.16□□□□□ -0.14
CSF1R-203ENST00000504875 CCNB3Q8WWL7 1395 aa14.16□□□□□ -0.14
CSF1R-203ENST00000504875 ARID3CA6NKF2 412 aa14.15□□□□□ -0.14
CSF1R-203ENST00000504875 DNAJC5BQ9UF47 199 aa14.15□□□□□ -0.14
CSF1R-203ENST00000504875 MIER1Q8N108 512 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms