RNA–Protein interactions for RNA: ENST00000498810.1

CDK11A-222, Transcript of cyclin dependent kinase 11A, humanhuman

TSL 2

Gene CDK11A, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11A-222ENST00000498810 AEBP2Q6ZN18 517 aaPredicted RBP32.88■■■□□ 2.85
CDK11A-222ENST00000498810 CHIC1Q5VXU3 224 aa31.55■■■□□ 2.64
CDK11A-222ENST00000498810 SENP3Q9H4L4 574 aaPredicted RBP27.95■■■□□ 2.06
CDK11A-222ENST00000498810 PHF23Q9BUL5 403 aaPredicted RBP27.71■■■□□ 2.03
CDK11A-222ENST00000498810 FOXD1Q16676 465 aa26.04■■□□□ 1.76
CDK11A-222ENST00000498810 NISCHQ9Y2I1 1504 aa25.97■■□□□ 1.75
CDK11A-222ENST00000498810 PLPPR3Q6T4P5 718 aa25.34■■□□□ 1.65
CDK11A-222ENST00000498810 PPP6R1Q9UPN7 881 aa24.63■■□□□ 1.53
CDK11A-222ENST00000498810 ADRA2BP18089 450 aa24.54■■□□□ 1.52
CDK11A-222ENST00000498810 PIAS4Q8N2W9 510 aaPredicted RBP24.36■■□□□ 1.49
CDK11A-222ENST00000498810 MSH5O43196 834 aa24.2■■□□□ 1.46
CDK11A-222ENST00000498810 CCDC180Q9P1Z9 1646 aa23.29■■□□□ 1.32
CDK11A-222ENST00000498810 POTEDQ86YR6 584 aa23.04■■□□□ 1.28
CDK11A-222ENST00000498810 ABCC9O60706 1549 aa22.87■■□□□ 1.25
CDK11A-222ENST00000498810 MAPK8IP2Q13387 824 aaPredicted RBP22.44■■□□□ 1.18
CDK11A-222ENST00000498810 SCAF1Q9H7N4 1312 aaKnown RBP22.43■■□□□ 1.18
CDK11A-222ENST00000498810 PPP4R3CPQ6ZMV5 832 aa22.27■■□□□ 1.16
CDK11A-222ENST00000498810 DMRT2Q9Y5R5 561 aa22.25■■□□□ 1.15
CDK11A-222ENST00000498810 RB1CC1Q8TDY2 1594 aa21.98■■□□□ 1.11
CDK11A-222ENST00000498810 NACADO15069 1562 aa21.86■■□□□ 1.09
CDK11A-222ENST00000498810 DCAF8L2P0C7V8 631 aa21.84■■□□□ 1.09
CDK11A-222ENST00000498810 CNKSR2Q8WXI2 1034 aa21.77■■□□□ 1.08
CDK11A-222ENST00000498810 ZCCHC6Q5VYS8 1495 aaKnown RBP21.61■■□□□ 1.05
CDK11A-222ENST00000498810 HOXD11P31277 338 aaPredicted RBP21.59■■□□□ 1.05
CDK11A-222ENST00000498810 MYO15BQ96JP2 1530 aa21.59■■□□□ 1.05
CDK11A-222ENST00000498810 UNC13AQ9UPW8 1703 aa21.53■■□□□ 1.04
CDK11A-222ENST00000498810 NCBP3Q53F19 620 aaKnown RBP21.5■■□□□ 1.03
CDK11A-222ENST00000498810 RNF216Q9NWF9 866 aaPredicted RBP21.5■■□□□ 1.03
CDK11A-222ENST00000498810 DCAF1Q9Y4B6 1507 aa21.45■■□□□ 1.02
CDK11A-222ENST00000498810 PABPN1Q86U42 306 aaKnown RBP eCLIP21.27■■□□□ 1
CDK11A-222ENST00000498810 SCRIBQ14160 1630 aa21.26■□□□□ 0.99
CDK11A-222ENST00000498810 NPM3O75607 178 aaKnown RBP21.22■□□□□ 0.99
CDK11A-222ENST00000498810 BICRAQ9NZM4 1560 aa21.2■□□□□ 0.98
CDK11A-222ENST00000498810 DCAF8L1A6NGE4 600 aa21.2■□□□□ 0.98
CDK11A-222ENST00000498810 KCNA4P22459 653 aa21.12■□□□□ 0.97
CDK11A-222ENST00000498810 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
CDK11A-222ENST00000498810 DNAJC5BQ9UF47 199 aa20.92■□□□□ 0.94
CDK11A-222ENST00000498810 EIF4G1Q04637 1599 aaKnown RBP20.72■□□□□ 0.91
CDK11A-222ENST00000498810 RNF39Q9H2S5 420 aa20.71■□□□□ 0.91
CDK11A-222ENST00000498810 CC2D2AQ9P2K1 1620 aa20.7■□□□□ 0.9
CDK11A-222ENST00000498810 CECR2Q9BXF3 1484 aa20.56■□□□□ 0.88
CDK11A-222ENST00000498810 CACNB1Q02641 598 aaPredicted RBP20.52■□□□□ 0.88
CDK11A-222ENST00000498810 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.48■□□□□ 0.873e-6■■■■□ 19.5
CDK11A-222ENST00000498810 C1QBPQ07021 282 aaKnown RBP20.42■□□□□ 0.86
CDK11A-222ENST00000498810 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
CDK11A-222ENST00000498810 BAZ1AQ9NRL2 1556 aaPredicted RBP20.21■□□□□ 0.83
CDK11A-222ENST00000498810 SLC4A2P04920 1241 aa20.2■□□□□ 0.82
CDK11A-222ENST00000498810 SMARCA2P51531 1590 aa20.16■□□□□ 0.82
CDK11A-222ENST00000498810 U3KPZ7 1027 aaPredicted RBP20.15■□□□□ 0.82
CDK11A-222ENST00000498810 ATAD2BQ9ULI0 1458 aa20.09■□□□□ 0.81
CDK11A-222ENST00000498810 NCAPD3P42695 1498 aa20.07■□□□□ 0.8
CDK11A-222ENST00000498810 HMGXB3Q12766 1538 aa20.07■□□□□ 0.8
CDK11A-222ENST00000498810 BAZ1BQ9UIG0 1483 aaKnown RBP20.02■□□□□ 0.8
CDK11A-222ENST00000498810 MROH2BQ7Z745 1585 aa20■□□□□ 0.79
CDK11A-222ENST00000498810 PEG3Q9GZU2 1588 aa19.98■□□□□ 0.79
CDK11A-222ENST00000498810 SLC4A1APQ9BWU0 796 aaKnown RBP19.97■□□□□ 0.79
CDK11A-222ENST00000498810 WIZO95785 1651 aa19.86■□□□□ 0.77
CDK11A-222ENST00000498810 ERCC6Q03468 1493 aa19.81■□□□□ 0.76
CDK11A-222ENST00000498810 SPINK5Q9NQ38 1064 aaPredicted RBP19.74■□□□□ 0.75
CDK11A-222ENST00000498810 NESP48681 1621 aa19.71■□□□□ 0.75
CDK11A-222ENST00000498810 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
CDK11A-222ENST00000498810 RSF1Q96T23 1441 aaPredicted RBP19.68■□□□□ 0.74
CDK11A-222ENST00000498810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.67■□□□□ 0.74
CDK11A-222ENST00000498810 HNRNPUL2Q1KMD3 747 aaKnown RBP19.67■□□□□ 0.74
CDK11A-222ENST00000498810 TOP2AP11388 1531 aaKnown RBP19.63■□□□□ 0.73
CDK11A-222ENST00000498810 CAPN15O75808 1086 aa19.63■□□□□ 0.73
CDK11A-222ENST00000498810 KIF21AQ7Z4S6 1674 aa19.6■□□□□ 0.73
CDK11A-222ENST00000498810 MYCNP04198 464 aaPredicted RBP19.6■□□□□ 0.73
CDK11A-222ENST00000498810 SAMD1Q6SPF0 538 aaPredicted RBP19.58■□□□□ 0.72
CDK11A-222ENST00000498810 FOXD4L1Q9NU39 408 aa19.58■□□□□ 0.72
CDK11A-222ENST00000498810 CUX2O14529 1486 aa19.57■□□□□ 0.72
CDK11A-222ENST00000498810 APLP2Q06481 763 aa19.57■□□□□ 0.72
CDK11A-222ENST00000498810 PDS5BQ9NTI5 1447 aa19.53■□□□□ 0.72
CDK11A-222ENST00000498810 DSG3P32926 999 aa19.51■□□□□ 0.71
CDK11A-222ENST00000498810 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
CDK11A-222ENST00000498810 CADPSQ9ULU8 1353 aa19.5■□□□□ 0.71
CDK11A-222ENST00000498810 ZBTB22O15209 634 aa19.44■□□□□ 0.7
CDK11A-222ENST00000498810 PRDM2Q13029 1718 aa19.44■□□□□ 0.7
CDK11A-222ENST00000498810 TRHP20396 242 aaPredicted RBP19.41■□□□□ 0.7
CDK11A-222ENST00000498810 ZNF219Q9P2Y4 722 aaPredicted RBP19.41■□□□□ 0.7
CDK11A-222ENST00000498810 CEP164Q9UPV0 1460 aa19.39■□□□□ 0.69
CDK11A-222ENST00000498810 MRC2Q9UBG0 1479 aa19.36■□□□□ 0.69
CDK11A-222ENST00000498810 CFTRP13569 1480 aa19.35■□□□□ 0.69
CDK11A-222ENST00000498810 FANCD2Q9BXW9 1451 aa19.35■□□□□ 0.69
CDK11A-222ENST00000498810 CCDC88BA6NC98 1476 aa19.32■□□□□ 0.68
CDK11A-222ENST00000498810 WDR62O43379 1518 aa19.29■□□□□ 0.68
CDK11A-222ENST00000498810 ABCB7O75027 752 aa19.22■□□□□ 0.67
CDK11A-222ENST00000498810 SUPT5HO00267 1087 aaKnown RBP19.16■□□□□ 0.66
CDK11A-222ENST00000498810 ATF5Q9Y2D1 282 aaPredicted RBP19.15■□□□□ 0.66
CDK11A-222ENST00000498810 URB2Q14146 1524 aaKnown RBP19.13■□□□□ 0.65
CDK11A-222ENST00000498810 DNMBPQ6XZF7 1577 aa19.02■□□□□ 0.64
CDK11A-222ENST00000498810 DNAJC5Q9H3Z4 198 aa19.02■□□□□ 0.64
CDK11A-222ENST00000498810 ABCC8Q09428 1581 aa19.02■□□□□ 0.63
CDK11A-222ENST00000498810 TOPBP1Q92547 1522 aa19.01■□□□□ 0.63
CDK11A-222ENST00000498810 POLA2Q14181 598 aa19.01■□□□□ 0.63
CDK11A-222ENST00000498810 ATXN8OSP0DMR3 200 aa18.99■□□□□ 0.63
CDK11A-222ENST00000498810 IFT140Q96RY7 1462 aa18.94■□□□□ 0.62
CDK11A-222ENST00000498810 EIF4G3O43432 1585 aaKnown RBP18.87■□□□□ 0.61
CDK11A-222ENST00000498810 CSRNP3Q8WYN3 585 aa18.87■□□□□ 0.61
CDK11A-222ENST00000498810 ZNF608Q9ULD9 1512 aaPredicted RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms