RNA–Protein interactions for RNA: ENST00000491770.1

UBE2D4-211, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 2

Gene UBE2D4, Length 538 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-211ENST00000491770 AEBP2Q6ZN18 517 aaPredicted RBP15□□□□□ -0.01
UBE2D4-211ENST00000491770 CHIC1Q5VXU3 224 aa14.81□□□□□ -0.04
UBE2D4-211ENST00000491770 PHF23Q9BUL5 403 aaPredicted RBP13.1□□□□□ -0.31
UBE2D4-211ENST00000491770 SENP3Q9H4L4 574 aaPredicted RBP12.61□□□□□ -0.39
UBE2D4-211ENST00000491770 NISCHQ9Y2I1 1504 aa12.32□□□□□ -0.44
UBE2D4-211ENST00000491770 PLPPR3Q6T4P5 718 aa12.08□□□□□ -0.48
UBE2D4-211ENST00000491770 FOXD1Q16676 465 aa11.74□□□□□ -0.53
UBE2D4-211ENST00000491770 PPP6R1Q9UPN7 881 aa11.49□□□□□ -0.57
UBE2D4-211ENST00000491770 ADRA2BP18089 450 aa11.44□□□□□ -0.58
UBE2D4-211ENST00000491770 CCDC180Q9P1Z9 1646 aa11.16□□□□□ -0.62
UBE2D4-211ENST00000491770 PIAS4Q8N2W9 510 aaPredicted RBP11.06□□□□□ -0.64
UBE2D4-211ENST00000491770 ABCC9O60706 1549 aa10.99□□□□□ -0.65
UBE2D4-211ENST00000491770 KCNA4P22459 653 aa10.7□□□□□ -0.7
UBE2D4-211ENST00000491770 PPP4R3CPQ6ZMV5 832 aa10.7□□□□□ -0.7
UBE2D4-211ENST00000491770 MSH5O43196 834 aa10.67□□□□□ -0.7
UBE2D4-211ENST00000491770 RB1CC1Q8TDY2 1594 aa10.56□□□□□ -0.72
UBE2D4-211ENST00000491770 DCAF8L2P0C7V8 631 aa10.46□□□□□ -0.73
UBE2D4-211ENST00000491770 NACADO15069 1562 aa10.46□□□□□ -0.74
UBE2D4-211ENST00000491770 NCBP3Q53F19 620 aaKnown RBP10.41□□□□□ -0.74
UBE2D4-211ENST00000491770 SCAF1Q9H7N4 1312 aaKnown RBP10.39□□□□□ -0.75
UBE2D4-211ENST00000491770 MAPK8IP2Q13387 824 aaPredicted RBP10.35□□□□□ -0.75
UBE2D4-211ENST00000491770 NPM3O75607 178 aaKnown RBP10.34□□□□□ -0.75
UBE2D4-211ENST00000491770 CNKSR2Q8WXI2 1034 aa10.33□□□□□ -0.76
UBE2D4-211ENST00000491770 UNC13AQ9UPW8 1703 aa10.29□□□□□ -0.76
UBE2D4-211ENST00000491770 ZCCHC6Q5VYS8 1495 aaKnown RBP10.26□□□□□ -0.77
UBE2D4-211ENST00000491770 MYO15BQ96JP2 1530 aa10.26□□□□□ -0.77
UBE2D4-211ENST00000491770 SLC4A1APQ9BWU0 796 aaKnown RBP10.19□□□□□ -0.78
UBE2D4-211ENST00000491770 SCRIBQ14160 1630 aa10.18□□□□□ -0.78
UBE2D4-211ENST00000491770 DCAF1Q9Y4B6 1507 aa10.17□□□□□ -0.78
UBE2D4-211ENST00000491770 PABPN1Q86U42 306 aaKnown RBP eCLIP10.16□□□□□ -0.78
UBE2D4-211ENST00000491770 EHMT2Q96KQ7 1210 aa10.14□□□□□ -0.79
UBE2D4-211ENST00000491770 DMRT2Q9Y5R5 561 aa10.13□□□□□ -0.79
UBE2D4-211ENST00000491770 SHROOM4Q9ULL8 1493 aa10.1□□□□□ -0.79
UBE2D4-211ENST00000491770 RNF216Q9NWF9 866 aaPredicted RBP10.09□□□□□ -0.79
UBE2D4-211ENST00000491770 BICRAQ9NZM4 1560 aa10.08□□□□□ -0.8
UBE2D4-211ENST00000491770 DNAJC5BQ9UF47 199 aa10.05□□□□□ -0.8
UBE2D4-211ENST00000491770 HOXD11P31277 338 aaPredicted RBP10.03□□□□□ -0.8
UBE2D4-211ENST00000491770 CSRNP3Q8WYN3 585 aa9.99□□□□□ -0.81
UBE2D4-211ENST00000491770 CC2D2AQ9P2K1 1620 aa9.93□□□□□ -0.82
UBE2D4-211ENST00000491770 EIF4G1Q04637 1599 aaKnown RBP9.93□□□□□ -0.82
UBE2D4-211ENST00000491770 ZBTB22O15209 634 aa9.9□□□□□ -0.82
UBE2D4-211ENST00000491770 CECR2Q9BXF3 1484 aa9.89□□□□□ -0.83
UBE2D4-211ENST00000491770 FOXD4L1Q9NU39 408 aa9.75□□□□□ -0.85
UBE2D4-211ENST00000491770 SLC4A2P04920 1241 aa9.74□□□□□ -0.85
UBE2D4-211ENST00000491770 SMARCA4P51532 1647 aa9.67□□□□□ -0.86
UBE2D4-211ENST00000491770 SMARCA2P51531 1590 aa9.66□□□□□ -0.86
UBE2D4-211ENST00000491770 BAZ1AQ9NRL2 1556 aaPredicted RBP9.66□□□□□ -0.86
UBE2D4-211ENST00000491770 ERCC6Q03468 1493 aa9.6□□□□□ -0.87
UBE2D4-211ENST00000491770 BAZ1BQ9UIG0 1483 aaKnown RBP9.6□□□□□ -0.87
UBE2D4-211ENST00000491770 HMGXB3Q12766 1538 aa9.6□□□□□ -0.87
UBE2D4-211ENST00000491770 DCAF8L1A6NGE4 600 aa9.59□□□□□ -0.87
UBE2D4-211ENST00000491770 ATAD2BQ9ULI0 1458 aa9.56□□□□□ -0.88
UBE2D4-211ENST00000491770 NCAPD3P42695 1498 aa9.53□□□□□ -0.88
UBE2D4-211ENST00000491770 MYCNP04198 464 aaPredicted RBP9.5□□□□□ -0.89
UBE2D4-211ENST00000491770 PEG3Q9GZU2 1588 aa9.49□□□□□ -0.89
UBE2D4-211ENST00000491770 MROH2BQ7Z745 1585 aa9.48□□□□□ -0.89
UBE2D4-211ENST00000491770 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.47□□□□□ -0.89
UBE2D4-211ENST00000491770 LAMC3Q9Y6N6 1575 aa9.46□□□□□ -0.9
UBE2D4-211ENST00000491770 CUX2O14529 1486 aa9.45□□□□□ -0.9
UBE2D4-211ENST00000491770 WIZO95785 1651 aa9.44□□□□□ -0.9
UBE2D4-211ENST00000491770 U3KPZ7 1027 aaPredicted RBP9.41□□□□□ -0.9
UBE2D4-211ENST00000491770 KIF21AQ7Z4S6 1674 aa9.41□□□□□ -0.9
UBE2D4-211ENST00000491770 ATXN8OSP0DMR3 200 aa9.4□□□□□ -0.9
UBE2D4-211ENST00000491770 POTEDQ86YR6 584 aa9.4□□□□□ -0.9
UBE2D4-211ENST00000491770 NESP48681 1621 aa9.4□□□□□ -0.9
UBE2D4-211ENST00000491770 PDS5BQ9NTI5 1447 aa9.38□□□□□ -0.91
UBE2D4-211ENST00000491770 TOP2AP11388 1531 aaKnown RBP9.36□□□□□ -0.91
UBE2D4-211ENST00000491770 THOC2Q8NI27 1593 aaKnown RBP9.36□□□□□ -0.91
UBE2D4-211ENST00000491770 PRDM2Q13029 1718 aa9.34□□□□□ -0.92
UBE2D4-211ENST00000491770 CEP164Q9UPV0 1460 aa9.33□□□□□ -0.92
UBE2D4-211ENST00000491770 ATF5Q9Y2D1 282 aaPredicted RBP9.31□□□□□ -0.92
UBE2D4-211ENST00000491770 MRC2Q9UBG0 1479 aa9.3□□□□□ -0.92
UBE2D4-211ENST00000491770 CADPSQ9ULU8 1353 aa9.29□□□□□ -0.92
UBE2D4-211ENST00000491770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.28□□□□□ -0.92
UBE2D4-211ENST00000491770 HNRNPUL2Q1KMD3 747 aaKnown RBP9.28□□□□□ -0.92
UBE2D4-211ENST00000491770 SAMD1Q6SPF0 538 aaPredicted RBP9.28□□□□□ -0.92
UBE2D4-211ENST00000491770 RSF1Q96T23 1441 aaPredicted RBP9.28□□□□□ -0.92
UBE2D4-211ENST00000491770 FANCD2Q9BXW9 1451 aa9.26□□□□□ -0.93
UBE2D4-211ENST00000491770 WDR62O43379 1518 aa9.25□□□□□ -0.93
UBE2D4-211ENST00000491770 RNF39Q9H2S5 420 aa9.22□□□□□ -0.93
UBE2D4-211ENST00000491770 CFTRP13569 1480 aa9.2□□□□□ -0.94
UBE2D4-211ENST00000491770 DNAJC5Q9H3Z4 198 aa9.17□□□□□ -0.94
UBE2D4-211ENST00000491770 CCDC88BA6NC98 1476 aa9.15□□□□□ -0.95
UBE2D4-211ENST00000491770 URB2Q14146 1524 aaKnown RBP9.11□□□□□ -0.95
UBE2D4-211ENST00000491770 ABCC8Q09428 1581 aa9.11□□□□□ -0.95
UBE2D4-211ENST00000491770 DNMBPQ6XZF7 1577 aa9.11□□□□□ -0.95
UBE2D4-211ENST00000491770 APLP2Q06481 763 aa9.1□□□□□ -0.95
UBE2D4-211ENST00000491770 C1QBPQ07021 282 aaKnown RBP9.09□□□□□ -0.95
UBE2D4-211ENST00000491770 ZNF219Q9P2Y4 722 aaPredicted RBP9.09□□□□□ -0.95
UBE2D4-211ENST00000491770 IFT140Q96RY7 1462 aa9.08□□□□□ -0.96
UBE2D4-211ENST00000491770 SPINK5Q9NQ38 1064 aaPredicted RBP9.08□□□□□ -0.96
UBE2D4-211ENST00000491770 EIF4G3O43432 1585 aaKnown RBP9.07□□□□□ -0.96
UBE2D4-211ENST00000491770 TOPBP1Q92547 1522 aa9.07□□□□□ -0.96
UBE2D4-211ENST00000491770 SUPT5HO00267 1087 aaKnown RBP9.07□□□□□ -0.96
UBE2D4-211ENST00000491770 CHD1O14646 1710 aa9.01□□□□□ -0.97
UBE2D4-211ENST00000491770 TRIM41Q8WV44 630 aa9□□□□□ -0.97
UBE2D4-211ENST00000491770 TRHP20396 242 aaPredicted RBP8.99□□□□□ -0.97
UBE2D4-211ENST00000491770 WDR97A6NE52 1622 aa8.98□□□□□ -0.97
UBE2D4-211ENST00000491770 POLA1P09884 1462 aaPredicted RBP8.98□□□□□ -0.97
UBE2D4-211ENST00000491770 ZNF608Q9ULD9 1512 aaPredicted RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms