RNA–Protein interactions for RNA: ENST00000490111.1

RTN1-207, Transcript of reticulon 1, humanhuman

TSL 3

Gene RTN1, Length 303 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-207ENST00000490111 CHIC1Q5VXU3 224 aa10.9□□□□□ -0.66
RTN1-207ENST00000490111 NISCHQ9Y2I1 1504 aa10.58□□□□□ -0.72
RTN1-207ENST00000490111 AEBP2Q6ZN18 517 aaPredicted RBP10.32□□□□□ -0.76
RTN1-207ENST00000490111 ABCC9O60706 1549 aa10.31□□□□□ -0.76
RTN1-207ENST00000490111 DNAJC5BQ9UF47 199 aa10.21□□□□□ -0.77
RTN1-207ENST00000490111 DNAJC5Q9H3Z4 198 aa9.81□□□□□ -0.84
RTN1-207ENST00000490111 CCDC180Q9P1Z9 1646 aa9.74□□□□□ -0.85
RTN1-207ENST00000490111 PHF23Q9BUL5 403 aaPredicted RBP9.72□□□□□ -0.85
RTN1-207ENST00000490111 SLC24A1O60721 1099 aa9.68□□□□□ -0.86
RTN1-207ENST00000490111 RB1CC1Q8TDY2 1594 aa9.56□□□□□ -0.88
RTN1-207ENST00000490111 EHMT2Q96KQ7 1210 aa9.55□□□□□ -0.88
RTN1-207ENST00000490111 PABPN1Q86U42 306 aaKnown RBP eCLIP9.52□□□□□ -0.89
RTN1-207ENST00000490111 CECR2Q9BXF3 1484 aa9.35□□□□□ -0.91
RTN1-207ENST00000490111 NACADO15069 1562 aa9.35□□□□□ -0.91
RTN1-207ENST00000490111 UNC13AQ9UPW8 1703 aa9.32□□□□□ -0.92
RTN1-207ENST00000490111 BICRAQ9NZM4 1560 aa9.29□□□□□ -0.92
RTN1-207ENST00000490111 CC2D2AQ9P2K1 1620 aa9.28□□□□□ -0.92
RTN1-207ENST00000490111 DCAF8L2P0C7V8 631 aa9.21□□□□□ -0.94
RTN1-207ENST00000490111 PLPPR3Q6T4P5 718 aa9.21□□□□□ -0.94
RTN1-207ENST00000490111 TRIM41Q8WV44 630 aa9.13□□□□□ -0.95
RTN1-207ENST00000490111 CUX2O14529 1486 aa9.12□□□□□ -0.95
RTN1-207ENST00000490111 EIF4G1Q04637 1599 aaKnown RBP9.12□□□□□ -0.95
RTN1-207ENST00000490111 SHROOM4Q9ULL8 1493 aa9.1□□□□□ -0.95
RTN1-207ENST00000490111 KCNA4P22459 653 aa9.09□□□□□ -0.95
RTN1-207ENST00000490111 CSRNP3Q8WYN3 585 aa9.06□□□□□ -0.96
RTN1-207ENST00000490111 MYO15BQ96JP2 1530 aa9.03□□□□□ -0.96
RTN1-207ENST00000490111 RTN4Q9NQC3 1192 aaKnown RBP9□□□□□ -0.97
RTN1-207ENST00000490111 ERCC6Q03468 1493 aa8.95□□□□□ -0.98
RTN1-207ENST00000490111 AMER1Q5JTC6 1135 aaPredicted RBP8.94□□□□□ -0.98
RTN1-207ENST00000490111 SCRIBQ14160 1630 aa8.84□□□□□ -0.99
RTN1-207ENST00000490111 SLC4A1APQ9BWU0 796 aaKnown RBP8.78□□□□□ -1
RTN1-207ENST00000490111 THOC2Q8NI27 1593 aaKnown RBP8.7□□□□□ -1.02
RTN1-207ENST00000490111 DCAF1Q9Y4B6 1507 aa8.7□□□□□ -1.02
RTN1-207ENST00000490111 NESP48681 1621 aa8.69□□□□□ -1.02
RTN1-207ENST00000490111 NCBP3Q53F19 620 aaKnown RBP8.68□□□□□ -1.02
RTN1-207ENST00000490111 NCAPD3P42695 1498 aa8.64□□□□□ -1.03
RTN1-207ENST00000490111 ADRA2BP18089 450 aa8.64□□□□□ -1.03
RTN1-207ENST00000490111 OSCARQ8IYS5 282 aa8.64□□□□□ -1.03
RTN1-207ENST00000490111 ZCCHC6Q5VYS8 1495 aaKnown RBP8.62□□□□□ -1.03
RTN1-207ENST00000490111 SMARCA2P51531 1590 aa8.6□□□□□ -1.03
RTN1-207ENST00000490111 BAZ1AQ9NRL2 1556 aaPredicted RBP8.6□□□□□ -1.03
RTN1-207ENST00000490111 TRHP20396 242 aaPredicted RBP8.57□□□□□ -1.04
RTN1-207ENST00000490111 RIMBP3CA6NJZ7 1639 aa8.56□□□□□ -1.04
RTN1-207ENST00000490111 RIMBP3BA6NNM3 1639 aa8.56□□□□□ -1.04
RTN1-207ENST00000490111 RIMBP3Q9UFD9 1639 aa8.56□□□□□ -1.04
RTN1-207ENST00000490111 KIF21AQ7Z4S6 1674 aa8.55□□□□□ -1.04
RTN1-207ENST00000490111 LAMC3Q9Y6N6 1575 aa8.53□□□□□ -1.04
RTN1-207ENST00000490111 SENP3Q9H4L4 574 aaPredicted RBP8.53□□□□□ -1.04
RTN1-207ENST00000490111 ATAD2BQ9ULI0 1458 aa8.52□□□□□ -1.05
RTN1-207ENST00000490111 PDS5BQ9NTI5 1447 aa8.52□□□□□ -1.05
RTN1-207ENST00000490111 HMGXB3Q12766 1538 aa8.5□□□□□ -1.05
RTN1-207ENST00000490111 ILDR1Q86SU0 546 aaPredicted RBP8.49□□□□□ -1.05
RTN1-207ENST00000490111 CYB5RLQ6IPT4 315 aa8.48□□□□□ -1.05
RTN1-207ENST00000490111 ARHGEF11O15085 1522 aa8.47□□□□□ -1.05
RTN1-207ENST00000490111 MRC2Q9UBG0 1479 aa8.46□□□□□ -1.05
RTN1-207ENST00000490111 WDR62O43379 1518 aa8.46□□□□□ -1.05
RTN1-207ENST00000490111 DAXXQ9UER7 740 aaPredicted RBP8.46□□□□□ -1.06
RTN1-207ENST00000490111 ZBTB22O15209 634 aa8.43□□□□□ -1.06
RTN1-207ENST00000490111 BAZ1BQ9UIG0 1483 aaKnown RBP8.41□□□□□ -1.06
RTN1-207ENST00000490111 SMARCA4P51532 1647 aa8.36□□□□□ -1.07
RTN1-207ENST00000490111 PRKCSHP14314 528 aaPredicted RBP8.36□□□□□ -1.07
RTN1-207ENST00000490111 CADPSQ9ULU8 1353 aa8.35□□□□□ -1.07
RTN1-207ENST00000490111 ARAP1Q96P48 1450 aa8.34□□□□□ -1.07
RTN1-207ENST00000490111 CEP164Q9UPV0 1460 aa8.31□□□□□ -1.08
RTN1-207ENST00000490111 PEG3Q9GZU2 1588 aa8.29□□□□□ -1.08
RTN1-207ENST00000490111 PPP6R1Q9UPN7 881 aa8.27□□□□□ -1.09
RTN1-207ENST00000490111 TAOK2Q9UL54 1235 aa8.25□□□□□ -1.09
RTN1-207ENST00000490111 FANCD2Q9BXW9 1451 aa8.25□□□□□ -1.09
RTN1-207ENST00000490111 RSF1Q96T23 1441 aaPredicted RBP8.24□□□□□ -1.09
RTN1-207ENST00000490111 PPP4R3CPQ6ZMV5 832 aa8.24□□□□□ -1.09
RTN1-207ENST00000490111 BCANQ96GW7 911 aa8.23□□□□□ -1.09
RTN1-207ENST00000490111 URB2Q14146 1524 aaKnown RBP8.22□□□□□ -1.09
RTN1-207ENST00000490111 ZNF608Q9ULD9 1512 aaPredicted RBP8.22□□□□□ -1.09
RTN1-207ENST00000490111 PLCB2Q00722 1185 aa8.2□□□□□ -1.1
RTN1-207ENST00000490111 NPM3O75607 178 aaKnown RBP8.19□□□□□ -1.1
RTN1-207ENST00000490111 ARXQ96QS3 562 aa8.19□□□□□ -1.1
RTN1-207ENST00000490111 CHD1O14646 1710 aa8.18□□□□□ -1.1
RTN1-207ENST00000490111 IFT140Q96RY7 1462 aa8.18□□□□□ -1.1
RTN1-207ENST00000490111 FBLN2P98095 1184 aa8.16□□□□□ -1.1
RTN1-207ENST00000490111 MROH2BQ7Z745 1585 aa8.14□□□□□ -1.11
RTN1-207ENST00000490111 KDM4FA0A1W2PPD8 638 aa8.14□□□□□ -1.11
RTN1-207ENST00000490111 CFTRP13569 1480 aa8.13□□□□□ -1.11
RTN1-207ENST00000490111 TIMELESSQ9UNS1 1208 aa8.13□□□□□ -1.11
RTN1-207ENST00000490111 EIF4G3O43432 1585 aaKnown RBP8.13□□□□□ -1.11
RTN1-207ENST00000490111 FKBP8Q14318 412 aa8.1□□□□□ -1.11
RTN1-207ENST00000490111 AQRO60306 1485 aaKnown RBP eCLIP8.08□□□□□ -1.12
RTN1-207ENST00000490111 TPRNQ4KMQ1 711 aa8.08□□□□□ -1.12
RTN1-207ENST00000490111 FOXD4L1Q9NU39 408 aa8.08□□□□□ -1.12
RTN1-207ENST00000490111 CLASP1Q7Z460 1538 aa8.08□□□□□ -1.12
RTN1-207ENST00000490111 FBXO41Q8TF61 875 aa8.07□□□□□ -1.12
RTN1-207ENST00000490111 HAP1P54257 671 aaPredicted RBP8.06□□□□□ -1.12
RTN1-207ENST00000490111 GAPVD1Q14C86 1478 aa8.05□□□□□ -1.12
RTN1-207ENST00000490111 ERCC6L2Q5T890 1561 aa8.05□□□□□ -1.12
RTN1-207ENST00000490111 SYNJ1O43426 1573 aa8.03□□□□□ -1.12
RTN1-207ENST00000490111 TOPBP1Q92547 1522 aa8.03□□□□□ -1.12
RTN1-207ENST00000490111 LMTK3Q96Q04 1460 aa8.02□□□□□ -1.13
RTN1-207ENST00000490111 TULP1O00294 542 aaPredicted RBP8.02□□□□□ -1.13
RTN1-207ENST00000490111 WIZO95785 1651 aa8.02□□□□□ -1.13
RTN1-207ENST00000490111 KIF13AQ9H1H9 1805 aa8.01□□□□□ -1.13
RTN1-207ENST00000490111 TARBP1Q13395 1621 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms