RNA–Protein interactions for RNA: ENST00000485938.3

CLN5-202, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 2

Gene CLN5, Length 2,341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-202ENST00000485938 NISCHQ9Y2I1 1504 aa45.85■■■■■ 4.93
CLN5-202ENST00000485938 SHROOM4Q9ULL8 1493 aa39.24■■■■□ 3.87
CLN5-202ENST00000485938 ZCCHC6Q5VYS8 1495 aaKnown RBP38.88■■■■□ 3.81
CLN5-202ENST00000485938 CCDC180Q9P1Z9 1646 aa38.85■■■■□ 3.81
CLN5-202ENST00000485938 SUPT5HO00267 1087 aaKnown RBP38.64■■■■□ 3.78
CLN5-202ENST00000485938 CHIC1Q5VXU3 224 aa37.84■■■■□ 3.65
CLN5-202ENST00000485938 MYO15BQ96JP2 1530 aa37.83■■■■□ 3.65
CLN5-202ENST00000485938 DCAF8L2P0C7V8 631 aa37.72■■■■□ 3.63
CLN5-202ENST00000485938 DCAF1Q9Y4B6 1507 aa37.67■■■■□ 3.62
CLN5-202ENST00000485938 HRCP23327 699 aa37.33■■■■□ 3.57
CLN5-202ENST00000485938 PCGF6Q9BYE7 350 aa36.99■■■■□ 3.51
CLN5-202ENST00000485938 ABCC9O60706 1549 aa36.77■■■■□ 3.48
CLN5-202ENST00000485938 LOC105371045A0A1W2PR82 267 aa36.69■■■■□ 3.46
CLN5-202ENST00000485938 PPARGC1BQ86YN6 1023 aaKnown RBP36.42■■■■□ 3.42
CLN5-202ENST00000485938 RSF1Q96T23 1441 aaPredicted RBP36.42■■■■□ 3.42
CLN5-202ENST00000485938 SCRIBQ14160 1630 aa36.4■■■■□ 3.42
CLN5-202ENST00000485938 TRIM26Q12899 539 aaPredicted RBP36.26■■■■□ 3.4
CLN5-202ENST00000485938 RB1CC1Q8TDY2 1594 aa36.1■■■■□ 3.37
CLN5-202ENST00000485938 TRIM41Q8WV44 630 aa36■■■■□ 3.35
CLN5-202ENST00000485938 NACADO15069 1562 aa35.95■■■■□ 3.35
CLN5-202ENST00000485938 CECR2Q9BXF3 1484 aa35.71■■■■□ 3.31
CLN5-202ENST00000485938 FAM9AQ8IZU1 332 aaPredicted RBP35.67■■■■□ 3.3
CLN5-202ENST00000485938 MROH2BQ7Z745 1585 aa35.65■■■■□ 3.3
CLN5-202ENST00000485938 ZEB1P37275 1124 aaPredicted RBP35.65■■■■□ 3.3
CLN5-202ENST00000485938 WIZO95785 1651 aa35.48■■■■□ 3.27
CLN5-202ENST00000485938 BAZ1AQ9NRL2 1556 aaPredicted RBP35.33■■■■□ 3.25
CLN5-202ENST00000485938 EHMT2Q96KQ7 1210 aa35.31■■■■□ 3.24
CLN5-202ENST00000485938 EIF4G1Q04637 1599 aaKnown RBP35.25■■■■□ 3.23
CLN5-202ENST00000485938 UNC13AQ9UPW8 1703 aa35.07■■■■□ 3.21
CLN5-202ENST00000485938 TOP2AP11388 1531 aaKnown RBP34.96■■■■□ 3.19
CLN5-202ENST00000485938 SMARCA4P51532 1647 aa34.85■■■■□ 3.17
CLN5-202ENST00000485938 ABCC8Q09428 1581 aa34.8■■■■□ 3.16
CLN5-202ENST00000485938 CCDC88BA6NC98 1476 aa34.79■■■■□ 3.16
CLN5-202ENST00000485938 SMARCA2P51531 1590 aa34.77■■■■□ 3.16
CLN5-202ENST00000485938 PABPN1Q86U42 306 aaKnown RBP eCLIP34.74■■■■□ 3.15
CLN5-202ENST00000485938 WRNQ14191 1432 aaPredicted RBP eCLIP34.71■■■■□ 3.15
CLN5-202ENST00000485938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.69■■■■□ 3.14
CLN5-202ENST00000485938 BICRAQ9NZM4 1560 aa34.63■■■■□ 3.13
CLN5-202ENST00000485938 CCER1Q8TC90 406 aaPredicted RBP34.63■■■■□ 3.13
CLN5-202ENST00000485938 SCAF1Q9H7N4 1312 aaKnown RBP34.61■■■■□ 3.13
CLN5-202ENST00000485938 CEP162Q5TB80 1403 aa34.59■■■■□ 3.13
CLN5-202ENST00000485938 SOGA1O94964 1423 aa34.55■■■■□ 3.12
CLN5-202ENST00000485938 TNIKQ9UKE5 1360 aa34.52■■■■□ 3.12
CLN5-202ENST00000485938 EEA1Q15075 1411 aa34.48■■■■□ 3.11
CLN5-202ENST00000485938 CSRNP3Q8WYN3 585 aa34.38■■■■□ 3.09
CLN5-202ENST00000485938 RUSC2Q8N2Y8 1516 aa34.36■■■■□ 3.09
CLN5-202ENST00000485938 PELP1Q8IZL8 1130 aaKnown RBP34.35■■■■□ 3.09
CLN5-202ENST00000485938 TTBK1Q5TCY1 1321 aaPredicted RBP34.29■■■■□ 3.08
CLN5-202ENST00000485938 GOLGA3Q08378 1498 aa34.25■■■■□ 3.07
CLN5-202ENST00000485938 UBTFP17480 764 aaKnown RBP34.22■■■■□ 3.07
CLN5-202ENST00000485938 PEG3Q9GZU2 1588 aa34.2■■■■□ 3.06
CLN5-202ENST00000485938 DIEXFQ68CQ4 756 aaKnown RBP34.17■■■■□ 3.06
CLN5-202ENST00000485938 ACIN1Q9UKV3 1341 aaKnown RBP34.17■■■■□ 3.06
CLN5-202ENST00000485938 NEUROD1Q13562 356 aa34.07■■■■□ 3.04
CLN5-202ENST00000485938 SYNJ1O43426 1573 aa34.03■■■■□ 3.04
CLN5-202ENST00000485938 KIF21BO75037 1637 aa34.02■■■■□ 3.04
CLN5-202ENST00000485938 CEP164Q9UPV0 1460 aa34.02■■■■□ 3.04
CLN5-202ENST00000485938 CENPBP07199 599 aaPredicted RBP33.9■■■■□ 3.02
CLN5-202ENST00000485938 CLIP1P30622 1438 aa33.86■■■■□ 3.01
CLN5-202ENST00000485938 ZNF316A6NFI3 1004 aaPredicted RBP33.85■■■■□ 3.01
CLN5-202ENST00000485938 ATAD2BQ9ULI0 1458 aa33.84■■■■□ 3.01
CLN5-202ENST00000485938 BAZ1BQ9UIG0 1483 aaKnown RBP33.8■■■■□ 3
CLN5-202ENST00000485938 VPS8Q8N3P4 1428 aa33.78■■■■□ 3
CLN5-202ENST00000485938 GTF3C3Q9Y5Q9 886 aa33.74■■■□□ 2.99
CLN5-202ENST00000485938 RAPGEF2Q9Y4G8 1499 aa33.7■■■□□ 2.99
CLN5-202ENST00000485938 HNRNPUL2Q1KMD3 747 aaKnown RBP33.69■■■□□ 2.98
CLN5-202ENST00000485938 TOP2BQ02880 1626 aa33.6■■■□□ 2.97
CLN5-202ENST00000485938 APLP2Q06481 763 aa33.54■■■□□ 2.96
CLN5-202ENST00000485938 BIVM-ERCC5R4GMW8 1640 aa33.48■■■□□ 2.95
CLN5-202ENST00000485938 ERICH3Q5RHP9 1530 aa33.41■■■□□ 2.94
CLN5-202ENST00000485938 MIER1Q8N108 512 aa33.4■■■□□ 2.94
CLN5-202ENST00000485938 RANGAP1P46060 587 aaPredicted RBP33.37■■■□□ 2.93
CLN5-202ENST00000485938 PRXQ9BXM0 1461 aa33.37■■■□□ 2.93
CLN5-202ENST00000485938 YTHDC1Q96MU7 727 aaKnown RBP33.32■■■□□ 2.92
CLN5-202ENST00000485938 ARAP1Q96P48 1450 aa33.3■■■□□ 2.92
CLN5-202ENST00000485938 NCAPD3P42695 1498 aa33.25■■■□□ 2.91
CLN5-202ENST00000485938 CLSPNQ9HAW4 1339 aa33.23■■■□□ 2.91
CLN5-202ENST00000485938 HMGXB3Q12766 1538 aa33.2■■■□□ 2.91
CLN5-202ENST00000485938 DHX57Q6P158 1386 aaKnown RBP33.18■■■□□ 2.9
CLN5-202ENST00000485938 CUX1P39880 1505 aa33.17■■■□□ 2.9
CLN5-202ENST00000485938 KANK4Q5T7N3 995 aaPredicted RBP33.12■■■□□ 2.89
CLN5-202ENST00000485938 KIF27Q86VH2 1401 aa33.09■■■□□ 2.89
CLN5-202ENST00000485938 RRBP1Q9P2E9 1410 aaKnown RBP33.08■■■□□ 2.89
CLN5-202ENST00000485938 CUX2O14529 1486 aa32.97■■■□□ 2.87
CLN5-202ENST00000485938 CFTRP13569 1480 aa32.97■■■□□ 2.87
CLN5-202ENST00000485938 ARHGAP35Q9NRY4 1499 aa32.95■■■□□ 2.86
CLN5-202ENST00000485938 CC2D2AQ9P2K1 1620 aa32.94■■■□□ 2.86
CLN5-202ENST00000485938 CCNB3Q8WWL7 1395 aa32.87■■■□□ 2.85
CLN5-202ENST00000485938 PRDM2Q13029 1718 aa32.76■■■□□ 2.84
CLN5-202ENST00000485938 IGF1RP08069 1367 aa32.7■■■□□ 2.83
CLN5-202ENST00000485938 MAP3K1Q13233 1512 aa32.69■■■□□ 2.82
CLN5-202ENST00000485938 MYT1Q01538 1121 aa32.68■■■□□ 2.82
CLN5-202ENST00000485938 TIAM1Q13009 1591 aa32.67■■■□□ 2.82
CLN5-202ENST00000485938 RAB3GAP2Q9H2M9 1393 aa32.62■■■□□ 2.81
CLN5-202ENST00000485938 ITGAEP38570 1179 aa32.61■■■□□ 2.81
CLN5-202ENST00000485938 MAPKBP1O60336 1514 aa32.59■■■□□ 2.81
CLN5-202ENST00000485938 CARMIL1Q5VZK9 1371 aa32.55■■■□□ 2.8
CLN5-202ENST00000485938 CADPSQ9ULU8 1353 aa32.54■■■□□ 2.8
CLN5-202ENST00000485938 LRRC9Q6ZRR7 1453 aa32.53■■■□□ 2.8
CLN5-202ENST00000485938 FGD5Q6ZNL6 1462 aa32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms