RNA–Protein interactions for RNA: ENST00000481020.5

NR1H3-220, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 5

Gene NR1H3, Length 1,704 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-220ENST00000481020 NISCHQ9Y2I1 1504 aa28.53■■■□□ 2.16
NR1H3-220ENST00000481020 CCDC180Q9P1Z9 1646 aa24.31■■□□□ 1.48
NR1H3-220ENST00000481020 ZCCHC6Q5VYS8 1495 aaKnown RBP24.27■■□□□ 1.48
NR1H3-220ENST00000481020 SHROOM4Q9ULL8 1493 aa24.14■■□□□ 1.45
NR1H3-220ENST00000481020 SUPT5HO00267 1087 aaKnown RBP23.96■■□□□ 1.43
NR1H3-220ENST00000481020 HRCP23327 699 aa23.87■■□□□ 1.41
NR1H3-220ENST00000481020 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
NR1H3-220ENST00000481020 DCAF1Q9Y4B6 1507 aa23.67■■□□□ 1.38
NR1H3-220ENST00000481020 MYO15BQ96JP2 1530 aa23.63■■□□□ 1.37
NR1H3-220ENST00000481020 PCGF6Q9BYE7 350 aa23.3■■□□□ 1.32
NR1H3-220ENST00000481020 TRIM26Q12899 539 aaPredicted RBP23.05■■□□□ 1.28
NR1H3-220ENST00000481020 DCAF8L2P0C7V8 631 aa23.03■■□□□ 1.28
NR1H3-220ENST00000481020 ABCC9O60706 1549 aa23.01■■□□□ 1.27
NR1H3-220ENST00000481020 ZEB1P37275 1124 aaPredicted RBP22.97■■□□□ 1.27
NR1H3-220ENST00000481020 PPARGC1BQ86YN6 1023 aaKnown RBP22.88■■□□□ 1.25
NR1H3-220ENST00000481020 LOC105371045A0A1W2PR82 267 aa22.8■■□□□ 1.24
NR1H3-220ENST00000481020 PELP1Q8IZL8 1130 aaKnown RBP22.76■■□□□ 1.23
NR1H3-220ENST00000481020 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
NR1H3-220ENST00000481020 NACADO15069 1562 aa22.67■■□□□ 1.22
NR1H3-220ENST00000481020 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
NR1H3-220ENST00000481020 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
NR1H3-220ENST00000481020 SCRIBQ14160 1630 aa22.4■■□□□ 1.18
NR1H3-220ENST00000481020 SCAF1Q9H7N4 1312 aaKnown RBP22.11■■□□□ 1.13
NR1H3-220ENST00000481020 MROH2BQ7Z745 1585 aa22.05■■□□□ 1.12
NR1H3-220ENST00000481020 BAZ1AQ9NRL2 1556 aaPredicted RBP22.05■■□□□ 1.12
NR1H3-220ENST00000481020 EIF4G1Q04637 1599 aaKnown RBP22.03■■□□□ 1.12
NR1H3-220ENST00000481020 FAM9AQ8IZU1 332 aaPredicted RBP22.02■■□□□ 1.12
NR1H3-220ENST00000481020 WRNQ14191 1432 aaPredicted RBP eCLIP22.02■■□□□ 1.11
NR1H3-220ENST00000481020 CECR2Q9BXF3 1484 aa22■■□□□ 1.11
NR1H3-220ENST00000481020 UNC13AQ9UPW8 1703 aa21.95■■□□□ 1.1
NR1H3-220ENST00000481020 MYT1Q01538 1121 aa21.92■■□□□ 1.1
NR1H3-220ENST00000481020 WIZO95785 1651 aa21.91■■□□□ 1.1
NR1H3-220ENST00000481020 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
NR1H3-220ENST00000481020 CCER1Q8TC90 406 aaPredicted RBP21.86■■□□□ 1.09
NR1H3-220ENST00000481020 CENPBP07199 599 aaPredicted RBP21.85■■□□□ 1.09
NR1H3-220ENST00000481020 EEA1Q15075 1411 aa21.84■■□□□ 1.09
NR1H3-220ENST00000481020 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
NR1H3-220ENST00000481020 BICRAQ9NZM4 1560 aa21.78■■□□□ 1.08
NR1H3-220ENST00000481020 TNIKQ9UKE5 1360 aa21.76■■□□□ 1.07
NR1H3-220ENST00000481020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.72■■□□□ 1.07
NR1H3-220ENST00000481020 DIEXFQ68CQ4 756 aaKnown RBP21.72■■□□□ 1.07
NR1H3-220ENST00000481020 PABPN1Q86U42 306 aaKnown RBP eCLIP21.7■■□□□ 1.06
NR1H3-220ENST00000481020 CEP162Q5TB80 1403 aa21.69■■□□□ 1.06
NR1H3-220ENST00000481020 NEUROD1Q13562 356 aa21.66■■□□□ 1.06
NR1H3-220ENST00000481020 SMARCA4P51532 1647 aa21.61■■□□□ 1.05
NR1H3-220ENST00000481020 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
NR1H3-220ENST00000481020 CCDC88BA6NC98 1476 aa21.59■■□□□ 1.05
NR1H3-220ENST00000481020 EHMT2Q96KQ7 1210 aa21.58■■□□□ 1.04
NR1H3-220ENST00000481020 GOLGA3Q08378 1498 aa21.53■■□□□ 1.04
NR1H3-220ENST00000481020 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
NR1H3-220ENST00000481020 ZNF316A6NFI3 1004 aaPredicted RBP21.52■■□□□ 1.04
NR1H3-220ENST00000481020 ABCC8Q09428 1581 aa21.52■■□□□ 1.03
NR1H3-220ENST00000481020 CSRNP3Q8WYN3 585 aa21.49■■□□□ 1.03
NR1H3-220ENST00000481020 SOGA1O94964 1423 aa21.45■■□□□ 1.02
NR1H3-220ENST00000481020 KIF21BO75037 1637 aa21.41■■□□□ 1.02
NR1H3-220ENST00000481020 CEP164Q9UPV0 1460 aa21.39■■□□□ 1.01
NR1H3-220ENST00000481020 PEG3Q9GZU2 1588 aa21.35■■□□□ 1.01
NR1H3-220ENST00000481020 BAZ1BQ9UIG0 1483 aaKnown RBP21.34■■□□□ 1.01
NR1H3-220ENST00000481020 CLSPNQ9HAW4 1339 aa21.32■■□□□ 1
NR1H3-220ENST00000481020 UBTFP17480 764 aaKnown RBP21.3■■□□□ 1
NR1H3-220ENST00000481020 VPS8Q8N3P4 1428 aa21.26■□□□□ 0.99
NR1H3-220ENST00000481020 RUSC2Q8N2Y8 1516 aa21.23■□□□□ 0.99
NR1H3-220ENST00000481020 CLIP1P30622 1438 aa21.21■□□□□ 0.99
NR1H3-220ENST00000481020 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
NR1H3-220ENST00000481020 ATAD2BQ9ULI0 1458 aa21.1■□□□□ 0.97
NR1H3-220ENST00000481020 APLP2Q06481 763 aa21.09■□□□□ 0.97
NR1H3-220ENST00000481020 MIER1Q8N108 512 aa21.09■□□□□ 0.97
NR1H3-220ENST00000481020 TTBK1Q5TCY1 1321 aaPredicted RBP21.07■□□□□ 0.96
NR1H3-220ENST00000481020 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
NR1H3-220ENST00000481020 HNRNPUL2Q1KMD3 747 aaKnown RBP20.98■□□□□ 0.95
NR1H3-220ENST00000481020 TOP2BQ02880 1626 aa20.96■□□□□ 0.95
NR1H3-220ENST00000481020 RAPGEF2Q9Y4G8 1499 aa20.96■□□□□ 0.95
NR1H3-220ENST00000481020 YTHDC1Q96MU7 727 aaKnown RBP20.95■□□□□ 0.94
NR1H3-220ENST00000481020 CUX2O14529 1486 aa20.93■□□□□ 0.94
NR1H3-220ENST00000481020 NCAPD3P42695 1498 aa20.92■□□□□ 0.94
NR1H3-220ENST00000481020 BIVM-ERCC5R4GMW8 1640 aa20.91■□□□□ 0.94
NR1H3-220ENST00000481020 DHX57Q6P158 1386 aaKnown RBP20.9■□□□□ 0.94
NR1H3-220ENST00000481020 HMGXB3Q12766 1538 aa20.89■□□□□ 0.93
NR1H3-220ENST00000481020 PRXQ9BXM0 1461 aa20.88■□□□□ 0.93
NR1H3-220ENST00000481020 RRBP1Q9P2E9 1410 aaKnown RBP20.88■□□□□ 0.93
NR1H3-220ENST00000481020 CC2D2AQ9P2K1 1620 aa20.81■□□□□ 0.92
NR1H3-220ENST00000481020 ARAP1Q96P48 1450 aa20.8■□□□□ 0.92
NR1H3-220ENST00000481020 MAP3K1Q13233 1512 aa20.72■□□□□ 0.91
NR1H3-220ENST00000481020 SUPT16HQ9Y5B9 1047 aaKnown RBP20.71■□□□□ 0.91
NR1H3-220ENST00000481020 KIF27Q86VH2 1401 aa20.67■□□□□ 0.9
NR1H3-220ENST00000481020 CCNB3Q8WWL7 1395 aa20.67■□□□□ 0.9
NR1H3-220ENST00000481020 TIMELESSQ9UNS1 1208 aa20.58■□□□□ 0.89
NR1H3-220ENST00000481020 KANK4Q5T7N3 995 aaPredicted RBP20.56■□□□□ 0.88
NR1H3-220ENST00000481020 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
NR1H3-220ENST00000481020 CUX1P39880 1505 aa20.53■□□□□ 0.88
NR1H3-220ENST00000481020 MAPKBP1O60336 1514 aa20.49■□□□□ 0.87
NR1H3-220ENST00000481020 TIAM1Q13009 1591 aa20.48■□□□□ 0.87
NR1H3-220ENST00000481020 TSHZ2Q9NRE2 1034 aa20.47■□□□□ 0.87
NR1H3-220ENST00000481020 CFTRP13569 1480 aa20.47■□□□□ 0.87
NR1H3-220ENST00000481020 RAB3GAP2Q9H2M9 1393 aa20.47■□□□□ 0.87
NR1H3-220ENST00000481020 SETD5Q9C0A6 1442 aa20.46■□□□□ 0.87
NR1H3-220ENST00000481020 ANP32EQ9BTT0 268 aa20.43■□□□□ 0.86
NR1H3-220ENST00000481020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.42■□□□□ 0.86
NR1H3-220ENST00000481020 RANGAP1P46060 587 aaPredicted RBP20.41■□□□□ 0.86
NR1H3-220ENST00000481020 FHAD1B1AJZ9 1412 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 920.1 ms