RNA–Protein interactions for RNA: ENST00000478979.5

CCDC78-210, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 3,054 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-210ENST00000478979 NISCHQ9Y2I1 1504 aa28.79■■■□□ 2.2
CCDC78-210ENST00000478979 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
CCDC78-210ENST00000478979 DCAF8L2P0C7V8 631 aa24.62■■□□□ 1.53
CCDC78-210ENST00000478979 SUPT5HO00267 1087 aaKnown RBP24.56■■□□□ 1.52
CCDC78-210ENST00000478979 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
CCDC78-210ENST00000478979 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
CCDC78-210ENST00000478979 HRCP23327 699 aa23.55■■□□□ 1.36
CCDC78-210ENST00000478979 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
CCDC78-210ENST00000478979 MYO15BQ96JP2 1530 aa23.46■■□□□ 1.35
CCDC78-210ENST00000478979 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.33
CCDC78-210ENST00000478979 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
CCDC78-210ENST00000478979 ABCC9O60706 1549 aa23.12■■□□□ 1.29
CCDC78-210ENST00000478979 LOC105371045A0A1W2PR82 267 aa23.09■■□□□ 1.29
CCDC78-210ENST00000478979 PPARGC1BQ86YN6 1023 aaKnown RBP23.07■■□□□ 1.28
CCDC78-210ENST00000478979 PCGF6Q9BYE7 350 aa23.04■■□□□ 1.28
CCDC78-210ENST00000478979 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
CCDC78-210ENST00000478979 RSF1Q96T23 1441 aaPredicted RBP22.84■■□□□ 1.25
CCDC78-210ENST00000478979 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
CCDC78-210ENST00000478979 PELP1Q8IZL8 1130 aaKnown RBP22.77■■□□□ 1.24
CCDC78-210ENST00000478979 TRIM41Q8WV44 630 aa22.7■■□□□ 1.22
CCDC78-210ENST00000478979 CECR2Q9BXF3 1484 aa22.67■■□□□ 1.22
CCDC78-210ENST00000478979 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
CCDC78-210ENST00000478979 NACADO15069 1562 aa22.56■■□□□ 1.2
CCDC78-210ENST00000478979 MROH2BQ7Z745 1585 aa22.5■■□□□ 1.19
CCDC78-210ENST00000478979 WIZO95785 1651 aa22.41■■□□□ 1.18
CCDC78-210ENST00000478979 SCAF1Q9H7N4 1312 aaKnown RBP22.32■■□□□ 1.16
CCDC78-210ENST00000478979 TRIM26Q12899 539 aaPredicted RBP22.29■■□□□ 1.16
CCDC78-210ENST00000478979 PABPN1Q86U42 306 aaKnown RBP eCLIP22.26■■□□□ 1.15
CCDC78-210ENST00000478979 ZEB1P37275 1124 aaPredicted RBP22.1■■□□□ 1.13
CCDC78-210ENST00000478979 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
CCDC78-210ENST00000478979 TTBK1Q5TCY1 1321 aaPredicted RBP22.04■■□□□ 1.12
CCDC78-210ENST00000478979 UNC13AQ9UPW8 1703 aa22.01■■□□□ 1.11
CCDC78-210ENST00000478979 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
CCDC78-210ENST00000478979 SMARCA4P51532 1647 aa21.94■■□□□ 1.1
CCDC78-210ENST00000478979 CCDC88BA6NC98 1476 aa21.92■■□□□ 1.1
CCDC78-210ENST00000478979 MYT1Q01538 1121 aa21.88■■□□□ 1.09
CCDC78-210ENST00000478979 TOP2AP11388 1531 aaKnown RBP21.87■■□□□ 1.09
CCDC78-210ENST00000478979 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
CCDC78-210ENST00000478979 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
CCDC78-210ENST00000478979 SOGA1O94964 1423 aa21.76■■□□□ 1.07
CCDC78-210ENST00000478979 ACIN1Q9UKV3 1341 aaKnown RBP21.74■■□□□ 1.07
CCDC78-210ENST00000478979 UBTFP17480 764 aaKnown RBP21.73■■□□□ 1.07
CCDC78-210ENST00000478979 BICRAQ9NZM4 1560 aa21.72■■□□□ 1.07
CCDC78-210ENST00000478979 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.7■■□□□ 1.06
CCDC78-210ENST00000478979 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
CCDC78-210ENST00000478979 RUSC2Q8N2Y8 1516 aa21.68■■□□□ 1.06
CCDC78-210ENST00000478979 RANGAP1P46060 587 aaPredicted RBP21.64■■□□□ 1.06
CCDC78-210ENST00000478979 CSRNP3Q8WYN3 585 aa21.59■■□□□ 1.05
CCDC78-210ENST00000478979 GTF3C3Q9Y5Q9 886 aa21.57■■□□□ 1.04
CCDC78-210ENST00000478979 CCER1Q8TC90 406 aaPredicted RBP21.57■■□□□ 1.04
CCDC78-210ENST00000478979 CEP162Q5TB80 1403 aa21.55■■□□□ 1.04
CCDC78-210ENST00000478979 WRNQ14191 1432 aaPredicted RBP eCLIP21.5■■□□□ 1.03
CCDC78-210ENST00000478979 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.03
CCDC78-210ENST00000478979 CENPBP07199 599 aaPredicted RBP21.45■■□□□ 1.02
CCDC78-210ENST00000478979 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.02
CCDC78-210ENST00000478979 TNIKQ9UKE5 1360 aa21.39■■□□□ 1.02
CCDC78-210ENST00000478979 SYNJ1O43426 1573 aa21.38■■□□□ 1.01
CCDC78-210ENST00000478979 DIEXFQ68CQ4 756 aaKnown RBP21.35■■□□□ 1.01
CCDC78-210ENST00000478979 GOLGA3Q08378 1498 aa21.32■■□□□ 1
CCDC78-210ENST00000478979 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
CCDC78-210ENST00000478979 EEA1Q15075 1411 aa21.29■■□□□ 1
CCDC78-210ENST00000478979 HNRNPUL2Q1KMD3 747 aaKnown RBP21.27■■□□□ 1
CCDC78-210ENST00000478979 CLIP1P30622 1438 aa21.18■□□□□ 0.98
CCDC78-210ENST00000478979 CEP164Q9UPV0 1460 aa21.18■□□□□ 0.98
CCDC78-210ENST00000478979 RAPGEF2Q9Y4G8 1499 aa21.18■□□□□ 0.98
CCDC78-210ENST00000478979 APLP2Q06481 763 aa21.16■□□□□ 0.98
CCDC78-210ENST00000478979 KIF21BO75037 1637 aa21.03■□□□□ 0.96
CCDC78-210ENST00000478979 YTHDC1Q96MU7 727 aaKnown RBP21.02■□□□□ 0.96
CCDC78-210ENST00000478979 TOP2BQ02880 1626 aa20.99■□□□□ 0.95
CCDC78-210ENST00000478979 VPS8Q8N3P4 1428 aa20.98■□□□□ 0.95
CCDC78-210ENST00000478979 NCAPD3P42695 1498 aa20.93■□□□□ 0.94
CCDC78-210ENST00000478979 CUX1P39880 1505 aa20.92■□□□□ 0.94
CCDC78-210ENST00000478979 ZNF316A6NFI3 1004 aaPredicted RBP20.91■□□□□ 0.94
CCDC78-210ENST00000478979 KANK4Q5T7N3 995 aaPredicted RBP20.87■□□□□ 0.93
CCDC78-210ENST00000478979 ITGAEP38570 1179 aa20.86■□□□□ 0.93
CCDC78-210ENST00000478979 HMGXB3Q12766 1538 aa20.86■□□□□ 0.93
CCDC78-210ENST00000478979 BIVM-ERCC5R4GMW8 1640 aa20.85■□□□□ 0.93
CCDC78-210ENST00000478979 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
CCDC78-210ENST00000478979 MIER1Q8N108 512 aa20.8■□□□□ 0.92
CCDC78-210ENST00000478979 CFTRP13569 1480 aa20.8■□□□□ 0.92
CCDC78-210ENST00000478979 PRXQ9BXM0 1461 aa20.79■□□□□ 0.92
CCDC78-210ENST00000478979 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
CCDC78-210ENST00000478979 ATP1B4Q9UN42 357 aaPredicted RBP20.76■□□□□ 0.91
CCDC78-210ENST00000478979 P3H3Q8IVL6 736 aa20.76■□□□□ 0.91
CCDC78-210ENST00000478979 CUX2O14529 1486 aa20.74■□□□□ 0.91
CCDC78-210ENST00000478979 ERICH3Q5RHP9 1530 aa20.69■□□□□ 0.9
CCDC78-210ENST00000478979 CADPSQ9ULU8 1353 aa20.67■□□□□ 0.9
CCDC78-210ENST00000478979 IGF1RP08069 1367 aa20.62■□□□□ 0.89
CCDC78-210ENST00000478979 ARHGAP35Q9NRY4 1499 aa20.62■□□□□ 0.89
CCDC78-210ENST00000478979 CC2D2AQ9P2K1 1620 aa20.61■□□□□ 0.89
CCDC78-210ENST00000478979 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
CCDC78-210ENST00000478979 CARMIL1Q5VZK9 1371 aa20.58■□□□□ 0.88
CCDC78-210ENST00000478979 NESP48681 1621 aa20.55■□□□□ 0.88
CCDC78-210ENST00000478979 RAD54L2Q9Y4B4 1467 aa20.53■□□□□ 0.88
CCDC78-210ENST00000478979 SUPT16HQ9Y5B9 1047 aaKnown RBP20.52■□□□□ 0.88
CCDC78-210ENST00000478979 ANP32EQ9BTT0 268 aa20.52■□□□□ 0.87
CCDC78-210ENST00000478979 BCL11AQ9H165 835 aa20.52■□□□□ 0.87
CCDC78-210ENST00000478979 FANCD2Q9BXW9 1451 aa20.52■□□□□ 0.87
CCDC78-210ENST00000478979 FAM50AQ14320 339 aaKnown RBP20.51■□□□□ 0.87
CCDC78-210ENST00000478979 DHX57Q6P158 1386 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms