RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 AEBP2Q6ZN18 517 aaPredicted RBP19.49■□□□□ 0.71
LDB3-206ENST00000477489 CHIC1Q5VXU3 224 aa18.66■□□□□ 0.58
LDB3-206ENST00000477489 SENP3Q9H4L4 574 aaPredicted RBP16.6■□□□□ 0.25
LDB3-206ENST00000477489 PHF23Q9BUL5 403 aaPredicted RBP16.41■□□□□ 0.22
LDB3-206ENST00000477489 FOXD1Q16676 465 aa15.46■□□□□ 0.07
LDB3-206ENST00000477489 PLPPR3Q6T4P5 718 aa14.97□□□□□ -0.01
LDB3-206ENST00000477489 NISCHQ9Y2I1 1504 aa14.92□□□□□ -0.02
LDB3-206ENST00000477489 PPP6R1Q9UPN7 881 aa14.56□□□□□ -0.08
LDB3-206ENST00000477489 ADRA2BP18089 450 aa14.53□□□□□ -0.08
LDB3-206ENST00000477489 PIAS4Q8N2W9 510 aaPredicted RBP14.47□□□□□ -0.09
LDB3-206ENST00000477489 MSH5O43196 834 aa14.41□□□□□ -0.1
LDB3-206ENST00000477489 POTEDQ86YR6 584 aa13.8□□□□□ -0.2
LDB3-206ENST00000477489 SCAF1Q9H7N4 1312 aaKnown RBP13.3□□□□□ -0.28
LDB3-206ENST00000477489 MAPK8IP2Q13387 824 aaPredicted RBP13.29□□□□□ -0.28
LDB3-206ENST00000477489 DMRT2Q9Y5R5 561 aa13.19□□□□□ -0.3
LDB3-206ENST00000477489 PPP4R3CPQ6ZMV5 832 aa13.14□□□□□ -0.31
LDB3-206ENST00000477489 CCDC180Q9P1Z9 1646 aa13.1□□□□□ -0.31
LDB3-206ENST00000477489 CNKSR2Q8WXI2 1034 aa12.87□□□□□ -0.35
LDB3-206ENST00000477489 ABCC9O60706 1549 aa12.84□□□□□ -0.35
LDB3-206ENST00000477489 HOXD11P31277 338 aaPredicted RBP12.77□□□□□ -0.37
LDB3-206ENST00000477489 RNF216Q9NWF9 866 aaPredicted RBP12.72□□□□□ -0.37
LDB3-206ENST00000477489 NCBP3Q53F19 620 aaKnown RBP12.69□□□□□ -0.38
LDB3-206ENST00000477489 DCAF8L1A6NGE4 600 aa12.63□□□□□ -0.39
LDB3-206ENST00000477489 ZCCHC6Q5VYS8 1495 aaKnown RBP12.58□□□□□ -0.4
LDB3-206ENST00000477489 DNAJC5BQ9UF47 199 aa12.55□□□□□ -0.4
LDB3-206ENST00000477489 NPM3O75607 178 aaKnown RBP12.5□□□□□ -0.41
LDB3-206ENST00000477489 DCAF1Q9Y4B6 1507 aa12.48□□□□□ -0.41
LDB3-206ENST00000477489 KCNA4P22459 653 aa12.39□□□□□ -0.43
LDB3-206ENST00000477489 MYO15BQ96JP2 1530 aa12.33□□□□□ -0.44
LDB3-206ENST00000477489 RNF39Q9H2S5 420 aa12.31□□□□□ -0.44
LDB3-206ENST00000477489 CACNB1Q02641 598 aaPredicted RBP12.27□□□□□ -0.45
LDB3-206ENST00000477489 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.15□□□□□ -0.46
LDB3-206ENST00000477489 NACADO15069 1562 aa12.14□□□□□ -0.47
LDB3-206ENST00000477489 C1QBPQ07021 282 aaKnown RBP12.13□□□□□ -0.47
LDB3-206ENST00000477489 DCAF8L2P0C7V8 631 aa12.04□□□□□ -0.48
LDB3-206ENST00000477489 RB1CC1Q8TDY2 1594 aa11.98□□□□□ -0.49
LDB3-206ENST00000477489 SHROOM4Q9ULL8 1493 aa11.97□□□□□ -0.49
LDB3-206ENST00000477489 DNAJC5Q9H3Z4 198 aa11.94□□□□□ -0.5
LDB3-206ENST00000477489 U3KPZ7 1027 aaPredicted RBP11.93□□□□□ -0.5
LDB3-206ENST00000477489 SLC4A2P04920 1241 aa11.9□□□□□ -0.5
LDB3-206ENST00000477489 SCRIBQ14160 1630 aa11.85□□□□□ -0.51
LDB3-206ENST00000477489 PABPN1Q86U42 306 aaKnown RBP eCLIP11.82□□□□□ -0.52
LDB3-206ENST00000477489 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.53
LDB3-206ENST00000477489 SLC4A1APQ9BWU0 796 aaKnown RBP11.73□□□□□ -0.53
LDB3-206ENST00000477489 SPINK5Q9NQ38 1064 aaPredicted RBP11.71□□□□□ -0.53
LDB3-206ENST00000477489 CAPN15O75808 1086 aa11.68□□□□□ -0.54
LDB3-206ENST00000477489 BICRAQ9NZM4 1560 aa11.65□□□□□ -0.54
LDB3-206ENST00000477489 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.64□□□□□ -0.55
LDB3-206ENST00000477489 HNRNPUL2Q1KMD3 747 aaKnown RBP11.64□□□□□ -0.55
LDB3-206ENST00000477489 APLP2Q06481 763 aa11.62□□□□□ -0.55
LDB3-206ENST00000477489 CECR2Q9BXF3 1484 aa11.62□□□□□ -0.55
LDB3-206ENST00000477489 SUPT5HO00267 1087 aaKnown RBP11.6□□□□□ -0.55
LDB3-206ENST00000477489 CC2D2AQ9P2K1 1620 aa11.59□□□□□ -0.55
LDB3-206ENST00000477489 DSG3P32926 999 aa11.58□□□□□ -0.56
LDB3-206ENST00000477489 MYCNP04198 464 aaPredicted RBP11.57□□□□□ -0.56
LDB3-206ENST00000477489 SAMD1Q6SPF0 538 aaPredicted RBP11.57□□□□□ -0.56
LDB3-206ENST00000477489 RSF1Q96T23 1441 aaPredicted RBP11.56□□□□□ -0.56
LDB3-206ENST00000477489 BAZ1AQ9NRL2 1556 aaPredicted RBP11.56□□□□□ -0.56
LDB3-206ENST00000477489 TRHP20396 242 aaPredicted RBP11.52□□□□□ -0.57
LDB3-206ENST00000477489 FOXD4L1Q9NU39 408 aa11.52□□□□□ -0.57
LDB3-206ENST00000477489 ZNF219Q9P2Y4 722 aaPredicted RBP11.52□□□□□ -0.57
LDB3-206ENST00000477489 SMARCA4P51532 1647 aa11.46□□□□□ -0.58
LDB3-206ENST00000477489 MROH2BQ7Z745 1585 aa11.45□□□□□ -0.58
LDB3-206ENST00000477489 ABCB7O75027 752 aa11.42□□□□□ -0.58
LDB3-206ENST00000477489 EIF4G1Q04637 1599 aaKnown RBP11.41□□□□□ -0.58
LDB3-206ENST00000477489 ZBTB22O15209 634 aa11.4□□□□□ -0.58
LDB3-206ENST00000477489 PEG3Q9GZU2 1588 aa11.4□□□□□ -0.58
LDB3-206ENST00000477489 WIZO95785 1651 aa11.36□□□□□ -0.59
LDB3-206ENST00000477489 TOP2AP11388 1531 aaKnown RBP11.35□□□□□ -0.59
LDB3-206ENST00000477489 SMARCA2P51531 1590 aa11.3□□□□□ -0.6
LDB3-206ENST00000477489 CUX2O14529 1486 aa11.3□□□□□ -0.6
LDB3-206ENST00000477489 ATF5Q9Y2D1 282 aaPredicted RBP11.28□□□□□ -0.6
LDB3-206ENST00000477489 POLA2Q14181 598 aa11.24□□□□□ -0.61
LDB3-206ENST00000477489 ATAD2BQ9ULI0 1458 aa11.22□□□□□ -0.61
LDB3-206ENST00000477489 TRIM41Q8WV44 630 aa11.2□□□□□ -0.62
LDB3-206ENST00000477489 HMGXB3Q12766 1538 aa11.19□□□□□ -0.62
LDB3-206ENST00000477489 ATXN8OSP0DMR3 200 aa11.17□□□□□ -0.62
LDB3-206ENST00000477489 NCAPD3P42695 1498 aa11.17□□□□□ -0.62
LDB3-206ENST00000477489 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
LDB3-206ENST00000477489 CCDC88BA6NC98 1476 aa11.15□□□□□ -0.62
LDB3-206ENST00000477489 ERCC6Q03468 1493 aa11.12□□□□□ -0.63
LDB3-206ENST00000477489 RBM42Q9BTD8 480 aaKnown RBP11.05□□□□□ -0.64
LDB3-206ENST00000477489 ZBTB12Q9Y330 459 aaPredicted RBP11.04□□□□□ -0.64
LDB3-206ENST00000477489 CSRNP3Q8WYN3 585 aa11.01□□□□□ -0.65
LDB3-206ENST00000477489 PRDM2Q13029 1718 aa10.96□□□□□ -0.65
LDB3-206ENST00000477489 EHMT2Q96KQ7 1210 aa10.94□□□□□ -0.66
LDB3-206ENST00000477489 CFTRP13569 1480 aa10.92□□□□□ -0.66
LDB3-206ENST00000477489 EEA1Q15075 1411 aa10.92□□□□□ -0.66
LDB3-206ENST00000477489 THOC2Q8NI27 1593 aaKnown RBP10.9□□□□□ -0.66
LDB3-206ENST00000477489 WRNQ14191 1432 aaPredicted RBP eCLIP10.9□□□□□ -0.66
LDB3-206ENST00000477489 OSCARQ8IYS5 282 aa10.89□□□□□ -0.67
LDB3-206ENST00000477489 ABCC8Q09428 1581 aa10.88□□□□□ -0.67
LDB3-206ENST00000477489 NESP48681 1621 aa10.87□□□□□ -0.67
LDB3-206ENST00000477489 BIVM-ERCC5R4GMW8 1640 aa10.87□□□□□ -0.67
LDB3-206ENST00000477489 TOP2BQ02880 1626 aa10.85□□□□□ -0.67
LDB3-206ENST00000477489 POTEHQ6S545 545 aa10.85□□□□□ -0.67
LDB3-206ENST00000477489 FBLN2P98095 1184 aa10.84□□□□□ -0.67
LDB3-206ENST00000477489 CADPSQ9ULU8 1353 aa10.84□□□□□ -0.67
LDB3-206ENST00000477489 AKT1S1Q96B36 256 aa10.83□□□□□ -0.68
LDB3-206ENST00000477489 SYNJ1O43426 1573 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms