RNA–Protein interactions for RNA: ENST00000475302.1

ITGA6-210, Transcript of integrin subunit alpha 6, humanhuman

TSL 3

Gene ITGA6, Length 577 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA6-210ENST00000475302 AEBP2Q6ZN18 517 aaPredicted RBP28.35■■■□□ 2.13
ITGA6-210ENST00000475302 CHIC1Q5VXU3 224 aa27.32■■□□□ 1.96
ITGA6-210ENST00000475302 PHF23Q9BUL5 403 aaPredicted RBP24.06■■□□□ 1.44
ITGA6-210ENST00000475302 SENP3Q9H4L4 574 aaPredicted RBP23.99■■□□□ 1.43
ITGA6-210ENST00000475302 FOXD1Q16676 465 aa22.39■■□□□ 1.17
ITGA6-210ENST00000475302 NISCHQ9Y2I1 1504 aa22.1■■□□□ 1.13
ITGA6-210ENST00000475302 PLPPR3Q6T4P5 718 aa22.01■■□□□ 1.11
ITGA6-210ENST00000475302 PPP6R1Q9UPN7 881 aa21.34■■□□□ 1.01
ITGA6-210ENST00000475302 ADRA2BP18089 450 aa21.29■■□□□ 1
ITGA6-210ENST00000475302 PIAS4Q8N2W9 510 aaPredicted RBP21.01■□□□□ 0.95
ITGA6-210ENST00000475302 MSH5O43196 834 aa20.67■□□□□ 0.9
ITGA6-210ENST00000475302 MAPK8IP2Q13387 824 aaPredicted RBP19.43■□□□□ 0.7
ITGA6-210ENST00000475302 POTEDQ86YR6 584 aa19.43■□□□□ 0.7
ITGA6-210ENST00000475302 PPP4R3CPQ6ZMV5 832 aa19.4■□□□□ 0.7
ITGA6-210ENST00000475302 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
ITGA6-210ENST00000475302 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
ITGA6-210ENST00000475302 DMRT2Q9Y5R5 561 aa19.13■□□□□ 0.65
ITGA6-210ENST00000475302 CNKSR2Q8WXI2 1034 aa18.88■□□□□ 0.61
ITGA6-210ENST00000475302 NCBP3Q53F19 620 aaKnown RBP18.73■□□□□ 0.59
ITGA6-210ENST00000475302 KCNA4P22459 653 aa18.66■□□□□ 0.58
ITGA6-210ENST00000475302 HOXD11P31277 338 aaPredicted RBP18.62■□□□□ 0.57
ITGA6-210ENST00000475302 RNF216Q9NWF9 866 aaPredicted RBP18.59■□□□□ 0.57
ITGA6-210ENST00000475302 ZCCHC6Q5VYS8 1495 aaKnown RBP18.57■□□□□ 0.56
ITGA6-210ENST00000475302 NPM3O75607 178 aaKnown RBP18.55■□□□□ 0.56
ITGA6-210ENST00000475302 DCAF8L1A6NGE4 600 aa18.35■□□□□ 0.53
ITGA6-210ENST00000475302 DCAF1Q9Y4B6 1507 aa18.33■□□□□ 0.52
ITGA6-210ENST00000475302 MYO15BQ96JP2 1530 aa18.12■□□□□ 0.49
ITGA6-210ENST00000475302 ABCC9O60706 1549 aa18.11■□□□□ 0.49
ITGA6-210ENST00000475302 DCAF8L2P0C7V8 631 aa18.03■□□□□ 0.48
ITGA6-210ENST00000475302 DNAJC5BQ9UF47 199 aa17.95■□□□□ 0.46
ITGA6-210ENST00000475302 NACADO15069 1562 aa17.92■□□□□ 0.46
ITGA6-210ENST00000475302 SHROOM4Q9ULL8 1493 aa17.88■□□□□ 0.45
ITGA6-210ENST00000475302 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.74■□□□□ 0.43
ITGA6-210ENST00000475302 RNF39Q9H2S5 420 aa17.73■□□□□ 0.43
ITGA6-210ENST00000475302 RB1CC1Q8TDY2 1594 aa17.71■□□□□ 0.43
ITGA6-210ENST00000475302 SLC4A1APQ9BWU0 796 aaKnown RBP17.67■□□□□ 0.42
ITGA6-210ENST00000475302 SLC4A2P04920 1241 aa17.62■□□□□ 0.41
ITGA6-210ENST00000475302 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
ITGA6-210ENST00000475302 CACNB1Q02641 598 aaPredicted RBP17.49■□□□□ 0.39
ITGA6-210ENST00000475302 U3KPZ7 1027 aaPredicted RBP17.47■□□□□ 0.39
ITGA6-210ENST00000475302 C1QBPQ07021 282 aaKnown RBP17.45■□□□□ 0.38
ITGA6-210ENST00000475302 UNC13AQ9UPW8 1703 aa17.39■□□□□ 0.37
ITGA6-210ENST00000475302 BICRAQ9NZM4 1560 aa17.29■□□□□ 0.36
ITGA6-210ENST00000475302 ZBTB22O15209 634 aa17.2■□□□□ 0.34
ITGA6-210ENST00000475302 FOXD4L1Q9NU39 408 aa17.2■□□□□ 0.34
ITGA6-210ENST00000475302 SUPT5HO00267 1087 aaKnown RBP17.19■□□□□ 0.34
ITGA6-210ENST00000475302 CECR2Q9BXF3 1484 aa17.18■□□□□ 0.34
ITGA6-210ENST00000475302 RSF1Q96T23 1441 aaPredicted RBP17.16■□□□□ 0.34
ITGA6-210ENST00000475302 MYCNP04198 464 aaPredicted RBP17.09■□□□□ 0.33
ITGA6-210ENST00000475302 SPINK5Q9NQ38 1064 aaPredicted RBP17.09■□□□□ 0.33
ITGA6-210ENST00000475302 PABPN1Q86U42 306 aaKnown RBP eCLIP17.08■□□□□ 0.32
ITGA6-210ENST00000475302 MROH2BQ7Z745 1585 aa17.07■□□□□ 0.32
ITGA6-210ENST00000475302 BAZ1AQ9NRL2 1556 aaPredicted RBP17.02■□□□□ 0.31
ITGA6-210ENST00000475302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.01■□□□□ 0.31
ITGA6-210ENST00000475302 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
ITGA6-210ENST00000475302 CAPN15O75808 1086 aa16.99■□□□□ 0.31
ITGA6-210ENST00000475302 SAMD1Q6SPF0 538 aaPredicted RBP16.97■□□□□ 0.31
ITGA6-210ENST00000475302 SMARCA4P51532 1647 aa16.96■□□□□ 0.3
ITGA6-210ENST00000475302 WIZO95785 1651 aa16.89■□□□□ 0.29
ITGA6-210ENST00000475302 APLP2Q06481 763 aa16.88■□□□□ 0.29
ITGA6-210ENST00000475302 EHMT2Q96KQ7 1210 aa16.87■□□□□ 0.29
ITGA6-210ENST00000475302 TRHP20396 242 aaPredicted RBP16.85■□□□□ 0.29
ITGA6-210ENST00000475302 PEG3Q9GZU2 1588 aa16.82■□□□□ 0.28
ITGA6-210ENST00000475302 CSRNP3Q8WYN3 585 aa16.81■□□□□ 0.28
ITGA6-210ENST00000475302 DSG3P32926 999 aa16.78■□□□□ 0.28
ITGA6-210ENST00000475302 ATF5Q9Y2D1 282 aaPredicted RBP16.77■□□□□ 0.28
ITGA6-210ENST00000475302 ZNF219Q9P2Y4 722 aaPredicted RBP16.76■□□□□ 0.27
ITGA6-210ENST00000475302 TOP2AP11388 1531 aaKnown RBP16.73■□□□□ 0.27
ITGA6-210ENST00000475302 ATAD2BQ9ULI0 1458 aa16.7■□□□□ 0.26
ITGA6-210ENST00000475302 EIF4G1Q04637 1599 aaKnown RBP16.69■□□□□ 0.26
ITGA6-210ENST00000475302 ABCB7O75027 752 aa16.69■□□□□ 0.26
ITGA6-210ENST00000475302 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
ITGA6-210ENST00000475302 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
ITGA6-210ENST00000475302 CCDC88BA6NC98 1476 aa16.58■□□□□ 0.24
ITGA6-210ENST00000475302 ATXN8OSP0DMR3 200 aa16.56■□□□□ 0.24
ITGA6-210ENST00000475302 BAZ1BQ9UIG0 1483 aaKnown RBP16.53■□□□□ 0.24
ITGA6-210ENST00000475302 HMGXB3Q12766 1538 aa16.52■□□□□ 0.24
ITGA6-210ENST00000475302 POLA2Q14181 598 aa16.5■□□□□ 0.23
ITGA6-210ENST00000475302 CC2D2AQ9P2K1 1620 aa16.43■□□□□ 0.22
ITGA6-210ENST00000475302 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
ITGA6-210ENST00000475302 CFTRP13569 1480 aa16.2■□□□□ 0.18
ITGA6-210ENST00000475302 ABCC8Q09428 1581 aa16.17■□□□□ 0.18
ITGA6-210ENST00000475302 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
ITGA6-210ENST00000475302 ZBTB12Q9Y330 459 aaPredicted RBP16.11■□□□□ 0.17
ITGA6-210ENST00000475302 WRNQ14191 1432 aaPredicted RBP eCLIP16.08■□□□□ 0.16
ITGA6-210ENST00000475302 PRDM2Q13029 1718 aa16.05■□□□□ 0.16
ITGA6-210ENST00000475302 SYNJ1O43426 1573 aa16.04■□□□□ 0.16
ITGA6-210ENST00000475302 MKRN4PQ13434 485 aaPredicted RBP16■□□□□ 0.15
ITGA6-210ENST00000475302 TOP2BQ02880 1626 aa15.98■□□□□ 0.15
ITGA6-210ENST00000475302 OSCARQ8IYS5 282 aa15.98■□□□□ 0.15
ITGA6-210ENST00000475302 BIVM-ERCC5R4GMW8 1640 aa15.97■□□□□ 0.15
ITGA6-210ENST00000475302 CUX1P39880 1505 aa15.95■□□□□ 0.14
ITGA6-210ENST00000475302 NESP48681 1621 aa15.95■□□□□ 0.14
ITGA6-210ENST00000475302 FBLN2P98095 1184 aa15.95■□□□□ 0.14
ITGA6-210ENST00000475302 LAMC3Q9Y6N6 1575 aa15.95■□□□□ 0.14
ITGA6-210ENST00000475302 LOC105371045A0A1W2PR82 267 aa15.92■□□□□ 0.14
ITGA6-210ENST00000475302 RBM42Q9BTD8 480 aaKnown RBP15.92■□□□□ 0.14
ITGA6-210ENST00000475302 SOGA1O94964 1423 aa15.92■□□□□ 0.14
ITGA6-210ENST00000475302 FANCD2Q9BXW9 1451 aa15.9■□□□□ 0.14
ITGA6-210ENST00000475302 RUSC2Q8N2Y8 1516 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms