RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 NISCHQ9Y2I1 1504 aa12.17□□□□□ -0.46
HERC4-209ENST00000473533 CCDC180Q9P1Z9 1646 aa10.41□□□□□ -0.74
HERC4-209ENST00000473533 ZCCHC6Q5VYS8 1495 aaKnown RBP10.34□□□□□ -0.75
HERC4-209ENST00000473533 SHROOM4Q9ULL8 1493 aa10.27□□□□□ -0.77
HERC4-209ENST00000473533 SUPT5HO00267 1087 aaKnown RBP10.2□□□□□ -0.78
HERC4-209ENST00000473533 DCAF1Q9Y4B6 1507 aa10.12□□□□□ -0.79
HERC4-209ENST00000473533 HRCP23327 699 aa10.07□□□□□ -0.8
HERC4-209ENST00000473533 CHIC1Q5VXU3 224 aa10.05□□□□□ -0.8
HERC4-209ENST00000473533 MYO15BQ96JP2 1530 aa9.94□□□□□ -0.82
HERC4-209ENST00000473533 DCAF8L2P0C7V8 631 aa9.88□□□□□ -0.83
HERC4-209ENST00000473533 PCGF6Q9BYE7 350 aa9.85□□□□□ -0.83
HERC4-209ENST00000473533 ZEB1P37275 1124 aaPredicted RBP9.81□□□□□ -0.84
HERC4-209ENST00000473533 ABCC9O60706 1549 aa9.8□□□□□ -0.84
HERC4-209ENST00000473533 TRIM26Q12899 539 aaPredicted RBP9.79□□□□□ -0.84
HERC4-209ENST00000473533 PELP1Q8IZL8 1130 aaKnown RBP9.66□□□□□ -0.86
HERC4-209ENST00000473533 RB1CC1Q8TDY2 1594 aa9.66□□□□□ -0.86
HERC4-209ENST00000473533 RSF1Q96T23 1441 aaPredicted RBP9.64□□□□□ -0.87
HERC4-209ENST00000473533 LOC105371045A0A1W2PR82 267 aa9.63□□□□□ -0.87
HERC4-209ENST00000473533 TRIM41Q8WV44 630 aa9.61□□□□□ -0.87
HERC4-209ENST00000473533 PPARGC1BQ86YN6 1023 aaKnown RBP9.6□□□□□ -0.87
HERC4-209ENST00000473533 SCRIBQ14160 1630 aa9.58□□□□□ -0.88
HERC4-209ENST00000473533 NACADO15069 1562 aa9.57□□□□□ -0.88
HERC4-209ENST00000473533 BAZ1AQ9NRL2 1556 aaPredicted RBP9.42□□□□□ -0.9
HERC4-209ENST00000473533 MROH2BQ7Z745 1585 aa9.38□□□□□ -0.91
HERC4-209ENST00000473533 FAM9AQ8IZU1 332 aaPredicted RBP9.38□□□□□ -0.91
HERC4-209ENST00000473533 EEA1Q15075 1411 aa9.36□□□□□ -0.91
HERC4-209ENST00000473533 CECR2Q9BXF3 1484 aa9.34□□□□□ -0.91
HERC4-209ENST00000473533 WRNQ14191 1432 aaPredicted RBP eCLIP9.34□□□□□ -0.911e-6■■■■■ 58.5
HERC4-209ENST00000473533 MYT1Q01538 1121 aa9.34□□□□□ -0.91
HERC4-209ENST00000473533 WIZO95785 1651 aa9.34□□□□□ -0.91
HERC4-209ENST00000473533 EIF4G1Q04637 1599 aaKnown RBP9.33□□□□□ -0.92
HERC4-209ENST00000473533 CENPBP07199 599 aaPredicted RBP9.33□□□□□ -0.92
HERC4-209ENST00000473533 TOP2AP11388 1531 aaKnown RBP9.32□□□□□ -0.92
HERC4-209ENST00000473533 CCER1Q8TC90 406 aaPredicted RBP9.32□□□□□ -0.92
HERC4-209ENST00000473533 TNIKQ9UKE5 1360 aa9.27□□□□□ -0.93
HERC4-209ENST00000473533 SCAF1Q9H7N4 1312 aaKnown RBP9.26□□□□□ -0.93
HERC4-209ENST00000473533 ACIN1Q9UKV3 1341 aaKnown RBP9.25□□□□□ -0.93
HERC4-209ENST00000473533 EHMT2Q96KQ7 1210 aa9.25□□□□□ -0.93
HERC4-209ENST00000473533 SMARCA4P51532 1647 aa9.24□□□□□ -0.93
HERC4-209ENST00000473533 CEP162Q5TB80 1403 aa9.23□□□□□ -0.93
HERC4-209ENST00000473533 DIEXFQ68CQ4 756 aaKnown RBP9.21□□□□□ -0.93
HERC4-209ENST00000473533 SMARCA2P51531 1590 aa9.21□□□□□ -0.94
HERC4-209ENST00000473533 GOLGA3Q08378 1498 aa9.2□□□□□ -0.94
HERC4-209ENST00000473533 CCDC88BA6NC98 1476 aa9.19□□□□□ -0.94
HERC4-209ENST00000473533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.19□□□□□ -0.94
HERC4-209ENST00000473533 CSRNP3Q8WYN3 585 aa9.17□□□□□ -0.94
HERC4-209ENST00000473533 CEP164Q9UPV0 1460 aa9.15□□□□□ -0.95
HERC4-209ENST00000473533 ABCC8Q09428 1581 aa9.15□□□□□ -0.95
HERC4-209ENST00000473533 ZNF316A6NFI3 1004 aaPredicted RBP9.14□□□□□ -0.95
HERC4-209ENST00000473533 KIF21BO75037 1637 aa9.13□□□□□ -0.95
HERC4-209ENST00000473533 UBTFP17480 764 aaKnown RBP9.12□□□□□ -0.95
HERC4-209ENST00000473533 BAZ1BQ9UIG0 1483 aaKnown RBP9.12□□□□□ -0.95
HERC4-209ENST00000473533 PEG3Q9GZU2 1588 aa9.12□□□□□ -0.95
HERC4-209ENST00000473533 NEUROD1Q13562 356 aa9.11□□□□□ -0.95
HERC4-209ENST00000473533 CLSPNQ9HAW4 1339 aa9.1□□□□□ -0.95
HERC4-209ENST00000473533 APLP2Q06481 763 aa9.09□□□□□ -0.95
HERC4-209ENST00000473533 SOGA1O94964 1423 aa9.09□□□□□ -0.95
HERC4-209ENST00000473533 GTF3C3Q9Y5Q9 886 aa9.08□□□□□ -0.96
HERC4-209ENST00000473533 UNC13AQ9UPW8 1703 aa9.08□□□□□ -0.96
HERC4-209ENST00000473533 VPS8Q8N3P4 1428 aa9.06□□□□□ -0.96
HERC4-209ENST00000473533 CLIP1P30622 1438 aa9.05□□□□□ -0.96
HERC4-209ENST00000473533 RUSC2Q8N2Y8 1516 aa8.99□□□□□ -0.97
HERC4-209ENST00000473533 ERICH3Q5RHP9 1530 aa8.98□□□□□ -0.97
HERC4-209ENST00000473533 SYNJ1O43426 1573 aa8.98□□□□□ -0.97
HERC4-209ENST00000473533 TTBK1Q5TCY1 1321 aaPredicted RBP8.97□□□□□ -0.97
HERC4-209ENST00000473533 BICRAQ9NZM4 1560 aa8.95□□□□□ -0.98
HERC4-209ENST00000473533 TOP2BQ02880 1626 aa8.95□□□□□ -0.98
HERC4-209ENST00000473533 ATAD2BQ9ULI0 1458 aa8.95□□□□□ -0.98
HERC4-209ENST00000473533 HNRNPUL2Q1KMD3 747 aaKnown RBP8.94□□□□□ -0.98
HERC4-209ENST00000473533 BIVM-ERCC5R4GMW8 1640 aa8.93□□□□□ -0.98
HERC4-209ENST00000473533 RAPGEF2Q9Y4G8 1499 aa8.9□□□□□ -0.98
HERC4-209ENST00000473533 MIER1Q8N108 512 aa8.9□□□□□ -0.98
HERC4-209ENST00000473533 YTHDC1Q96MU7 727 aaKnown RBP8.89□□□□□ -0.99
HERC4-209ENST00000473533 DNAJC5BQ9UF47 199 aa8.89□□□□□ -0.99
HERC4-209ENST00000473533 PRXQ9BXM0 1461 aa8.88□□□□□ -0.99
HERC4-209ENST00000473533 CUX2O14529 1486 aa8.87□□□□□ -0.99
HERC4-209ENST00000473533 RRBP1Q9P2E9 1410 aaKnown RBP8.87□□□□□ -0.99
HERC4-209ENST00000473533 KIF27Q86VH2 1401 aa8.86□□□□□ -0.99
HERC4-209ENST00000473533 DHX57Q6P158 1386 aaKnown RBP8.86□□□□□ -0.99
HERC4-209ENST00000473533 HMGXB3Q12766 1538 aa8.86□□□□□ -0.99
HERC4-209ENST00000473533 MAP3K1Q13233 1512 aa8.84□□□□□ -0.99
HERC4-209ENST00000473533 ARAP1Q96P48 1450 aa8.83□□□□□ -1
HERC4-209ENST00000473533 PABPN1Q86U42 306 aaKnown RBP eCLIP8.83□□□□□ -1
HERC4-209ENST00000473533 CCNB3Q8WWL7 1395 aa8.81□□□□□ -1
HERC4-209ENST00000473533 NCAPD3P42695 1498 aa8.8□□□□□ -1
HERC4-209ENST00000473533 TIMELESSQ9UNS1 1208 aa8.79□□□□□ -1
HERC4-209ENST00000473533 PRDM2Q13029 1718 aa8.77□□□□□ -1.01
HERC4-209ENST00000473533 FHAD1B1AJZ9 1412 aa8.75□□□□□ -1.01
HERC4-209ENST00000473533 CUX1P39880 1505 aa8.75□□□□□ -1.01
HERC4-209ENST00000473533 CFTRP13569 1480 aa8.75□□□□□ -1.01
HERC4-209ENST00000473533 SUPT16HQ9Y5B9 1047 aaKnown RBP8.74□□□□□ -1.01
HERC4-209ENST00000473533 ARHGAP35Q9NRY4 1499 aa8.74□□□□□ -1.01
HERC4-209ENST00000473533 TIAM1Q13009 1591 aa8.73□□□□□ -1.01
HERC4-209ENST00000473533 SETD5Q9C0A6 1442 aa8.72□□□□□ -1.01
HERC4-209ENST00000473533 RANGAP1P46060 587 aaPredicted RBP8.72□□□□□ -1.01
HERC4-209ENST00000473533 KANK4Q5T7N3 995 aaPredicted RBP8.71□□□□□ -1.02
HERC4-209ENST00000473533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.7□□□□□ -1.023e-7■■■□□ 17.8
HERC4-209ENST00000473533 NEFLP07196 543 aa8.7□□□□□ -1.02
HERC4-209ENST00000473533 RAB3GAP2Q9H2M9 1393 aa8.69□□□□□ -1.02
HERC4-209ENST00000473533 CFAP43Q8NDM7 1665 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms