RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NISCHQ9Y2I1 1504 aa27.49■■□□□ 1.99
CCDC88A-211ENST00000471947 DCAF8L2P0C7V8 631 aa25.3■■□□□ 1.64
CCDC88A-211ENST00000471947 SHROOM4Q9ULL8 1493 aa25■■□□□ 1.59
CCDC88A-211ENST00000471947 SUPT5HO00267 1087 aaKnown RBP24.55■■□□□ 1.52
CCDC88A-211ENST00000471947 EHMT2Q96KQ7 1210 aa23.4■■□□□ 1.34
CCDC88A-211ENST00000471947 ABCC9O60706 1549 aa23.05■■□□□ 1.28
CCDC88A-211ENST00000471947 ZCCHC6Q5VYS8 1495 aaKnown RBP22.99■■□□□ 1.27
CCDC88A-211ENST00000471947 FAM9AQ8IZU1 332 aaPredicted RBP22.98■■□□□ 1.27
CCDC88A-211ENST00000471947 CHIC1Q5VXU3 224 aa22.83■■□□□ 1.24
CCDC88A-211ENST00000471947 LOC105371045A0A1W2PR82 267 aa22.74■■□□□ 1.23
CCDC88A-211ENST00000471947 CCDC180Q9P1Z9 1646 aa22.73■■□□□ 1.23
CCDC88A-211ENST00000471947 PCGF6Q9BYE7 350 aa22.56■■□□□ 1.2
CCDC88A-211ENST00000471947 PABPN1Q86U42 306 aaKnown RBP eCLIP22.54■■□□□ 1.2
CCDC88A-211ENST00000471947 TRIM41Q8WV44 630 aa22.47■■□□□ 1.19
CCDC88A-211ENST00000471947 SCRIBQ14160 1630 aa22.47■■□□□ 1.19
CCDC88A-211ENST00000471947 TTBK1Q5TCY1 1321 aaPredicted RBP22.43■■□□□ 1.18
CCDC88A-211ENST00000471947 PPARGC1BQ86YN6 1023 aaKnown RBP22.38■■□□□ 1.17
CCDC88A-211ENST00000471947 MYO15BQ96JP2 1530 aa22.29■■□□□ 1.16
CCDC88A-211ENST00000471947 RANGAP1P46060 587 aaPredicted RBP22.17■■□□□ 1.14
CCDC88A-211ENST00000471947 CECR2Q9BXF3 1484 aa21.98■■□□□ 1.11
CCDC88A-211ENST00000471947 RSF1Q96T23 1441 aaPredicted RBP21.96■■□□□ 1.11
CCDC88A-211ENST00000471947 DCAF1Q9Y4B6 1507 aa21.81■■□□□ 1.08
CCDC88A-211ENST00000471947 UBTFP17480 764 aaKnown RBP21.76■■□□□ 1.07
CCDC88A-211ENST00000471947 MROH2BQ7Z745 1585 aa21.63■■□□□ 1.05
CCDC88A-211ENST00000471947 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
CCDC88A-211ENST00000471947 HRCP23327 699 aa21.6■■□□□ 1.05
CCDC88A-211ENST00000471947 NACADO15069 1562 aa21.55■■□□□ 1.04
CCDC88A-211ENST00000471947 TRIM26Q12899 539 aaPredicted RBP21.53■■□□□ 1.04
CCDC88A-211ENST00000471947 WIZO95785 1651 aa21.42■■□□□ 1.02
CCDC88A-211ENST00000471947 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.37■■□□□ 1.01
CCDC88A-211ENST00000471947 CCER1Q8TC90 406 aaPredicted RBP21.31■■□□□ 1
CCDC88A-211ENST00000471947 ATP1B4Q9UN42 357 aaPredicted RBP21.27■□□□□ 0.99
CCDC88A-211ENST00000471947 APLP2Q06481 763 aa21.24■□□□□ 0.99
CCDC88A-211ENST00000471947 HNRNPUL2Q1KMD3 747 aaKnown RBP21.21■□□□□ 0.99
CCDC88A-211ENST00000471947 ABCC8Q09428 1581 aa21.21■□□□□ 0.99
CCDC88A-211ENST00000471947 CSRNP3Q8WYN3 585 aa21.18■□□□□ 0.98
CCDC88A-211ENST00000471947 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
CCDC88A-211ENST00000471947 BAZ1AQ9NRL2 1556 aaPredicted RBP21.12■□□□□ 0.97
CCDC88A-211ENST00000471947 ITGAEP38570 1179 aa21.1■□□□□ 0.97
CCDC88A-211ENST00000471947 SOGA1O94964 1423 aa21.1■□□□□ 0.97
CCDC88A-211ENST00000471947 RUSC2Q8N2Y8 1516 aa20.96■□□□□ 0.95
CCDC88A-211ENST00000471947 P3H3Q8IVL6 736 aa20.96■□□□□ 0.95
CCDC88A-211ENST00000471947 BAZ1BQ9UIG0 1483 aaKnown RBP20.9■□□□□ 0.94
CCDC88A-211ENST00000471947 SMARCA4P51532 1647 aa20.88■□□□□ 0.93
CCDC88A-211ENST00000471947 WRNQ14191 1432 aaPredicted RBP eCLIP20.85■□□□□ 0.93
CCDC88A-211ENST00000471947 TOP2AP11388 1531 aaKnown RBP20.78■□□□□ 0.92
CCDC88A-211ENST00000471947 ZEB1P37275 1124 aaPredicted RBP20.77■□□□□ 0.92
CCDC88A-211ENST00000471947 CEP162Q5TB80 1403 aa20.76■□□□□ 0.91
CCDC88A-211ENST00000471947 ARID3CA6NKF2 412 aa20.74■□□□□ 0.91
CCDC88A-211ENST00000471947 ATAD2BQ9ULI0 1458 aa20.73■□□□□ 0.91
CCDC88A-211ENST00000471947 SMARCA2P51531 1590 aa20.71■□□□□ 0.91
CCDC88A-211ENST00000471947 YTHDC1Q96MU7 727 aaKnown RBP20.7■□□□□ 0.9
CCDC88A-211ENST00000471947 BICRAQ9NZM4 1560 aa20.69■□□□□ 0.9
CCDC88A-211ENST00000471947 UNC13AQ9UPW8 1703 aa20.64■□□□□ 0.9
CCDC88A-211ENST00000471947 DNAJC5BQ9UF47 199 aa20.63■□□□□ 0.89
CCDC88A-211ENST00000471947 CLIP1P30622 1438 aa20.56■□□□□ 0.88
CCDC88A-211ENST00000471947 FAM50AQ14320 339 aaKnown RBP20.54■□□□□ 0.88
CCDC88A-211ENST00000471947 TNIKQ9UKE5 1360 aa20.51■□□□□ 0.87
CCDC88A-211ENST00000471947 GOLGA3Q08378 1498 aa20.48■□□□□ 0.87
CCDC88A-211ENST00000471947 RAPGEF2Q9Y4G8 1499 aa20.45■□□□□ 0.86
CCDC88A-211ENST00000471947 FBLN2P98095 1184 aa20.44■□□□□ 0.86
CCDC88A-211ENST00000471947 KANK4Q5T7N3 995 aaPredicted RBP20.43■□□□□ 0.86
CCDC88A-211ENST00000471947 DIEXFQ68CQ4 756 aaKnown RBP20.42■□□□□ 0.86
CCDC88A-211ENST00000471947 SYNJ1O43426 1573 aa20.37■□□□□ 0.85
CCDC88A-211ENST00000471947 NEUROD1Q13562 356 aa20.37■□□□□ 0.85
CCDC88A-211ENST00000471947 EIF4G1Q04637 1599 aaKnown RBP20.33■□□□□ 0.85
CCDC88A-211ENST00000471947 CEP164Q9UPV0 1460 aa20.33■□□□□ 0.85
CCDC88A-211ENST00000471947 CUX2O14529 1486 aa20.31■□□□□ 0.84
CCDC88A-211ENST00000471947 EEA1Q15075 1411 aa20.3■□□□□ 0.84
CCDC88A-211ENST00000471947 KIF27Q86VH2 1401 aa20.26■□□□□ 0.83
CCDC88A-211ENST00000471947 TDRD9Q8NDG6 1382 aaKnown RBP20.23■□□□□ 0.83
CCDC88A-211ENST00000471947 NESP48681 1621 aa20.21■□□□□ 0.83
CCDC88A-211ENST00000471947 CNGB1Q14028 1251 aaPredicted RBP20.2■□□□□ 0.83
CCDC88A-211ENST00000471947 CADPSQ9ULU8 1353 aa20.19■□□□□ 0.82
CCDC88A-211ENST00000471947 HIRIP3Q9BW71 556 aaPredicted RBP20.18■□□□□ 0.82
CCDC88A-211ENST00000471947 CARMIL1Q5VZK9 1371 aa20.15■□□□□ 0.82
CCDC88A-211ENST00000471947 NCAPD3P42695 1498 aa20.15■□□□□ 0.82
CCDC88A-211ENST00000471947 CHIC2Q9UKJ5 165 aa20.14■□□□□ 0.82
CCDC88A-211ENST00000471947 ZNF316A6NFI3 1004 aaPredicted RBP20.12■□□□□ 0.81
CCDC88A-211ENST00000471947 RAD54L2Q9Y4B4 1467 aa20.12■□□□□ 0.81
CCDC88A-211ENST00000471947 VPS8Q8N3P4 1428 aa20.11■□□□□ 0.81
CCDC88A-211ENST00000471947 CUX1P39880 1505 aa20.05■□□□□ 0.8
CCDC88A-211ENST00000471947 TRIM52Q96A61 297 aa20.03■□□□□ 0.8
CCDC88A-211ENST00000471947 IGF1RP08069 1367 aa20.02■□□□□ 0.8
CCDC88A-211ENST00000471947 FANCD2Q9BXW9 1451 aa20.01■□□□□ 0.79
CCDC88A-211ENST00000471947 CENPBP07199 599 aaPredicted RBP20.01■□□□□ 0.79
CCDC88A-211ENST00000471947 SIN3AQ96ST3 1273 aa20.01■□□□□ 0.79
CCDC88A-211ENST00000471947 CC2D2AQ9P2K1 1620 aa20.01■□□□□ 0.79
CCDC88A-211ENST00000471947 MIER1Q8N108 512 aa20■□□□□ 0.79
CCDC88A-211ENST00000471947 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
CCDC88A-211ENST00000471947 ZNF777Q9ULD5 760 aaPredicted RBP19.99■□□□□ 0.79
CCDC88A-211ENST00000471947 CFTRP13569 1480 aa19.97■□□□□ 0.79
CCDC88A-211ENST00000471947 FHOD3Q2V2M9 1422 aa19.96■□□□□ 0.79
CCDC88A-211ENST00000471947 RRP7BPQ9NSQ0 103 aa19.94■□□□□ 0.78
CCDC88A-211ENST00000471947 POLR3GLQ9BT43 218 aa19.94■□□□□ 0.78
CCDC88A-211ENST00000471947 GTF3C3Q9Y5Q9 886 aa19.93■□□□□ 0.78
CCDC88A-211ENST00000471947 PEG3Q9GZU2 1588 aa19.93■□□□□ 0.78
CCDC88A-211ENST00000471947 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
CCDC88A-211ENST00000471947 KIF21BO75037 1637 aa19.91■□□□□ 0.78
CCDC88A-211ENST00000471947 SCAF1Q9H7N4 1312 aaKnown RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms