RNA–Protein interactions for RNA: ENST00000470252.1

SFXN3-205, Transcript of sideroflexin 3, humanhuman

TSL 2

Gene SFXN3, Length 2,541 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN3-205ENST00000470252 NISCHQ9Y2I1 1504 aa26.41■■□□□ 1.82
SFXN3-205ENST00000470252 SHROOM4Q9ULL8 1493 aa22.83■■□□□ 1.25
SFXN3-205ENST00000470252 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
SFXN3-205ENST00000470252 ZCCHC6Q5VYS8 1495 aaKnown RBP22.4■■□□□ 1.18
SFXN3-205ENST00000470252 CCDC180Q9P1Z9 1646 aa22.33■■□□□ 1.16
SFXN3-205ENST00000470252 MYO15BQ96JP2 1530 aa22.05■■□□□ 1.12
SFXN3-205ENST00000470252 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
SFXN3-205ENST00000470252 HRCP23327 699 aa21.89■■□□□ 1.1
SFXN3-205ENST00000470252 DCAF8L2P0C7V8 631 aa21.89■■□□□ 1.09
SFXN3-205ENST00000470252 ABCC9O60706 1549 aa21.7■■□□□ 1.06
SFXN3-205ENST00000470252 PCGF6Q9BYE7 350 aa21.7■■□□□ 1.06
SFXN3-205ENST00000470252 DCAF1Q9Y4B6 1507 aa21.62■■□□□ 1.05
SFXN3-205ENST00000470252 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
SFXN3-205ENST00000470252 LOC105371045A0A1W2PR82 267 aa21.4■■□□□ 1.02
SFXN3-205ENST00000470252 TRIM26Q12899 539 aaPredicted RBP21.18■□□□□ 0.98
SFXN3-205ENST00000470252 SCRIBQ14160 1630 aa21.03■□□□□ 0.96
SFXN3-205ENST00000470252 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
SFXN3-205ENST00000470252 TRIM41Q8WV44 630 aa20.93■□□□□ 0.94
SFXN3-205ENST00000470252 RB1CC1Q8TDY2 1594 aa20.91■□□□□ 0.94
SFXN3-205ENST00000470252 ZEB1P37275 1124 aaPredicted RBP20.85■□□□□ 0.93
SFXN3-205ENST00000470252 NACADO15069 1562 aa20.85■□□□□ 0.93
SFXN3-205ENST00000470252 FAM9AQ8IZU1 332 aaPredicted RBP20.81■□□□□ 0.92
SFXN3-205ENST00000470252 EHMT2Q96KQ7 1210 aa20.67■□□□□ 0.9
SFXN3-205ENST00000470252 CECR2Q9BXF3 1484 aa20.6■□□□□ 0.89
SFXN3-205ENST00000470252 MROH2BQ7Z745 1585 aa20.57■□□□□ 0.88
SFXN3-205ENST00000470252 PELP1Q8IZL8 1130 aaKnown RBP20.57■□□□□ 0.88
SFXN3-205ENST00000470252 WIZO95785 1651 aa20.53■□□□□ 0.88
SFXN3-205ENST00000470252 UNC13AQ9UPW8 1703 aa20.43■□□□□ 0.86
SFXN3-205ENST00000470252 BAZ1AQ9NRL2 1556 aaPredicted RBP20.39■□□□□ 0.85
SFXN3-205ENST00000470252 SCAF1Q9H7N4 1312 aaKnown RBP20.39■□□□□ 0.85
SFXN3-205ENST00000470252 PABPN1Q86U42 306 aaKnown RBP eCLIP20.34■□□□□ 0.85
SFXN3-205ENST00000470252 EIF4G1Q04637 1599 aaKnown RBP20.34■□□□□ 0.85
SFXN3-205ENST00000470252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.3■□□□□ 0.84
SFXN3-205ENST00000470252 CCER1Q8TC90 406 aaPredicted RBP20.27■□□□□ 0.84
SFXN3-205ENST00000470252 BICRAQ9NZM4 1560 aa20.24■□□□□ 0.83
SFXN3-205ENST00000470252 ABCC8Q09428 1581 aa20.18■□□□□ 0.82
SFXN3-205ENST00000470252 TOP2AP11388 1531 aaKnown RBP20.15■□□□□ 0.82
SFXN3-205ENST00000470252 CCDC88BA6NC98 1476 aa20.13■□□□□ 0.81
SFXN3-205ENST00000470252 WRNQ14191 1432 aaPredicted RBP eCLIP20.11■□□□□ 0.81
SFXN3-205ENST00000470252 TTBK1Q5TCY1 1321 aaPredicted RBP20.09■□□□□ 0.81
SFXN3-205ENST00000470252 SMARCA4P51532 1647 aa20.08■□□□□ 0.81
SFXN3-205ENST00000470252 ACIN1Q9UKV3 1341 aaKnown RBP20.08■□□□□ 0.81
SFXN3-205ENST00000470252 CEP162Q5TB80 1403 aa20.08■□□□□ 0.8
SFXN3-205ENST00000470252 SMARCA2P51531 1590 aa20.07■□□□□ 0.8
SFXN3-205ENST00000470252 DIEXFQ68CQ4 756 aaKnown RBP20.04■□□□□ 0.8
SFXN3-205ENST00000470252 NEUROD1Q13562 356 aa20.03■□□□□ 0.8
SFXN3-205ENST00000470252 SOGA1O94964 1423 aa20.01■□□□□ 0.79
SFXN3-205ENST00000470252 TNIKQ9UKE5 1360 aa20■□□□□ 0.79
SFXN3-205ENST00000470252 MYT1Q01538 1121 aa20■□□□□ 0.79
SFXN3-205ENST00000470252 EEA1Q15075 1411 aa19.93■□□□□ 0.78
SFXN3-205ENST00000470252 CENPBP07199 599 aaPredicted RBP19.93■□□□□ 0.78
SFXN3-205ENST00000470252 UBTFP17480 764 aaKnown RBP19.92■□□□□ 0.78
SFXN3-205ENST00000470252 CSRNP3Q8WYN3 585 aa19.92■□□□□ 0.78
SFXN3-205ENST00000470252 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
SFXN3-205ENST00000470252 GTF3C3Q9Y5Q9 886 aa19.87■□□□□ 0.77
SFXN3-205ENST00000470252 GOLGA3Q08378 1498 aa19.85■□□□□ 0.77
SFXN3-205ENST00000470252 DNAJC5BQ9UF47 199 aa19.82■□□□□ 0.76
SFXN3-205ENST00000470252 ZNF316A6NFI3 1004 aaPredicted RBP19.79■□□□□ 0.76
SFXN3-205ENST00000470252 CEP164Q9UPV0 1460 aa19.69■□□□□ 0.74
SFXN3-205ENST00000470252 KIF21BO75037 1637 aa19.69■□□□□ 0.74
SFXN3-205ENST00000470252 SYNJ1O43426 1573 aa19.67■□□□□ 0.74
SFXN3-205ENST00000470252 HNRNPUL2Q1KMD3 747 aaKnown RBP19.67■□□□□ 0.74
SFXN3-205ENST00000470252 CLIP1P30622 1438 aa19.64■□□□□ 0.73
SFXN3-205ENST00000470252 YTHDC1Q96MU7 727 aaKnown RBP19.63■□□□□ 0.73
SFXN3-205ENST00000470252 PEG3Q9GZU2 1588 aa19.63■□□□□ 0.73
SFXN3-205ENST00000470252 CC2D2AQ9P2K1 1620 aa19.6■□□□□ 0.73
SFXN3-205ENST00000470252 VPS8Q8N3P4 1428 aa19.58■□□□□ 0.73
SFXN3-205ENST00000470252 MIER1Q8N108 512 aa19.57■□□□□ 0.72
SFXN3-205ENST00000470252 APLP2Q06481 763 aa19.54■□□□□ 0.72
SFXN3-205ENST00000470252 BAZ1BQ9UIG0 1483 aaKnown RBP19.54■□□□□ 0.72
SFXN3-205ENST00000470252 RAPGEF2Q9Y4G8 1499 aa19.52■□□□□ 0.71
SFXN3-205ENST00000470252 RANGAP1P46060 587 aaPredicted RBP19.48■□□□□ 0.71
SFXN3-205ENST00000470252 ATAD2BQ9ULI0 1458 aa19.45■□□□□ 0.7
SFXN3-205ENST00000470252 TOP2BQ02880 1626 aa19.39■□□□□ 0.69
SFXN3-205ENST00000470252 BIVM-ERCC5R4GMW8 1640 aa19.32■□□□□ 0.68
SFXN3-205ENST00000470252 CLSPNQ9HAW4 1339 aa19.3■□□□□ 0.68
SFXN3-205ENST00000470252 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
SFXN3-205ENST00000470252 DHX57Q6P158 1386 aaKnown RBP19.3■□□□□ 0.68
SFXN3-205ENST00000470252 ARAP1Q96P48 1450 aa19.28■□□□□ 0.68
SFXN3-205ENST00000470252 PRXQ9BXM0 1461 aa19.25■□□□□ 0.67
SFXN3-205ENST00000470252 NCAPD3P42695 1498 aa19.24■□□□□ 0.67
SFXN3-205ENST00000470252 KANK4Q5T7N3 995 aaPredicted RBP19.23■□□□□ 0.67
SFXN3-205ENST00000470252 RRBP1Q9P2E9 1410 aaKnown RBP19.17■□□□□ 0.66
SFXN3-205ENST00000470252 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
SFXN3-205ENST00000470252 CUX1P39880 1505 aa19.13■□□□□ 0.65
SFXN3-205ENST00000470252 KIF27Q86VH2 1401 aa19.11■□□□□ 0.65
SFXN3-205ENST00000470252 CUX2O14529 1486 aa19.09■□□□□ 0.65
SFXN3-205ENST00000470252 CCNB3Q8WWL7 1395 aa19.08■□□□□ 0.64
SFXN3-205ENST00000470252 SUPT16HQ9Y5B9 1047 aaKnown RBP19.06■□□□□ 0.64
SFXN3-205ENST00000470252 ARHGAP35Q9NRY4 1499 aa19.06■□□□□ 0.64
SFXN3-205ENST00000470252 ITGAEP38570 1179 aa19.04■□□□□ 0.64
SFXN3-205ENST00000470252 RAB3GAP2Q9H2M9 1393 aa18.96■□□□□ 0.63
SFXN3-205ENST00000470252 CFTRP13569 1480 aa18.95■□□□□ 0.62
SFXN3-205ENST00000470252 MAPKBP1O60336 1514 aa18.94■□□□□ 0.62
SFXN3-205ENST00000470252 TIAM1Q13009 1591 aa18.93■□□□□ 0.62
SFXN3-205ENST00000470252 PRDM2Q13029 1718 aa18.91■□□□□ 0.62
SFXN3-205ENST00000470252 KCNH8Q96L42 1107 aa18.88■□□□□ 0.61
SFXN3-205ENST00000470252 MAP3K1Q13233 1512 aa18.88■□□□□ 0.61
SFXN3-205ENST00000470252 SETD5Q9C0A6 1442 aa18.87■□□□□ 0.61
SFXN3-205ENST00000470252 IGF1RP08069 1367 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms