RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-208ENST00000465627 AEBP2Q6ZN18 517 aaPredicted RBP24.31■■□□□ 1.48
UBA3-208ENST00000465627 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
UBA3-208ENST00000465627 SENP3Q9H4L4 574 aaPredicted RBP20.86■□□□□ 0.93
UBA3-208ENST00000465627 NISCHQ9Y2I1 1504 aa20.58■□□□□ 0.88
UBA3-208ENST00000465627 PHF23Q9BUL5 403 aaPredicted RBP20.53■□□□□ 0.88
UBA3-208ENST00000465627 FOXD1Q16676 465 aa19.4■□□□□ 0.7
UBA3-208ENST00000465627 DNAJC5BQ9UF47 199 aa19.22■□□□□ 0.67
UBA3-208ENST00000465627 ABCC9O60706 1549 aa19.16■□□□□ 0.66
UBA3-208ENST00000465627 DNAJC5Q9H3Z4 198 aa18.47■□□□□ 0.55
UBA3-208ENST00000465627 PLPPR3Q6T4P5 718 aa18.39■□□□□ 0.53
UBA3-208ENST00000465627 MSH5O43196 834 aa18.28■□□□□ 0.52
UBA3-208ENST00000465627 PIAS4Q8N2W9 510 aaPredicted RBP18.14■□□□□ 0.49
UBA3-208ENST00000465627 CCDC180Q9P1Z9 1646 aa18.05■□□□□ 0.48
UBA3-208ENST00000465627 PPP6R1Q9UPN7 881 aa18■□□□□ 0.47
UBA3-208ENST00000465627 POTEDQ86YR6 584 aa17.98■□□□□ 0.47
UBA3-208ENST00000465627 ADRA2BP18089 450 aa17.96■□□□□ 0.47
UBA3-208ENST00000465627 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.41
UBA3-208ENST00000465627 RB1CC1Q8TDY2 1594 aa17.54■□□□□ 0.4
UBA3-208ENST00000465627 UNC13AQ9UPW8 1703 aa17.35■□□□□ 0.37
UBA3-208ENST00000465627 CECR2Q9BXF3 1484 aa17.33■□□□□ 0.36
UBA3-208ENST00000465627 ZCCHC6Q5VYS8 1495 aaKnown RBP17.27■□□□□ 0.36
UBA3-208ENST00000465627 CC2D2AQ9P2K1 1620 aa17.22■□□□□ 0.35
UBA3-208ENST00000465627 BICRAQ9NZM4 1560 aa17.2■□□□□ 0.34
UBA3-208ENST00000465627 TRIM41Q8WV44 630 aa17.18■□□□□ 0.34
UBA3-208ENST00000465627 DCAF1Q9Y4B6 1507 aa17.09■□□□□ 0.33
UBA3-208ENST00000465627 NACADO15069 1562 aa17.07■□□□□ 0.32
UBA3-208ENST00000465627 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
UBA3-208ENST00000465627 CUX2O14529 1486 aa16.91■□□□□ 0.3
UBA3-208ENST00000465627 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
UBA3-208ENST00000465627 DCAF8L2P0C7V8 631 aa16.8■□□□□ 0.28
UBA3-208ENST00000465627 SHROOM4Q9ULL8 1493 aa16.58■□□□□ 0.25
UBA3-208ENST00000465627 SCAF1Q9H7N4 1312 aaKnown RBP16.54■□□□□ 0.24
UBA3-208ENST00000465627 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
UBA3-208ENST00000465627 MAPK8IP2Q13387 824 aaPredicted RBP16.51■□□□□ 0.23
UBA3-208ENST00000465627 DMRT2Q9Y5R5 561 aa16.5■□□□□ 0.23
UBA3-208ENST00000465627 SCRIBQ14160 1630 aa16.46■□□□□ 0.23
UBA3-208ENST00000465627 THOC2Q8NI27 1593 aaKnown RBP16.17■□□□□ 0.18
UBA3-208ENST00000465627 NESP48681 1621 aa16.12■□□□□ 0.17
UBA3-208ENST00000465627 ILDR1Q86SU0 546 aaPredicted RBP16.11■□□□□ 0.17
UBA3-208ENST00000465627 PPP4R3CPQ6ZMV5 832 aa16.06■□□□□ 0.16
UBA3-208ENST00000465627 RIMBP3CA6NJZ7 1639 aa16.01■□□□□ 0.15
UBA3-208ENST00000465627 RIMBP3BA6NNM3 1639 aa16.01■□□□□ 0.15
UBA3-208ENST00000465627 RIMBP3Q9UFD9 1639 aa16.01■□□□□ 0.15
UBA3-208ENST00000465627 BAZ1AQ9NRL2 1556 aaPredicted RBP16■□□□□ 0.15
UBA3-208ENST00000465627 SMARCA2P51531 1590 aa15.96■□□□□ 0.15
UBA3-208ENST00000465627 TRHP20396 242 aaPredicted RBP15.96■□□□□ 0.15
UBA3-208ENST00000465627 OSCARQ8IYS5 282 aa15.93■□□□□ 0.14
UBA3-208ENST00000465627 RSF1Q96T23 1441 aaPredicted RBP15.89■□□□□ 0.13
UBA3-208ENST00000465627 MROH2BQ7Z745 1585 aa15.88■□□□□ 0.13
UBA3-208ENST00000465627 KIF21AQ7Z4S6 1674 aa15.87■□□□□ 0.13
UBA3-208ENST00000465627 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
UBA3-208ENST00000465627 SMARCA4P51532 1647 aa15.84■□□□□ 0.13
UBA3-208ENST00000465627 HOXD11P31277 338 aaPredicted RBP15.84■□□□□ 0.13
UBA3-208ENST00000465627 CNKSR2Q8WXI2 1034 aa15.82■□□□□ 0.12
UBA3-208ENST00000465627 NCAPD3P42695 1498 aa15.78■□□□□ 0.12
UBA3-208ENST00000465627 ARHGEF11O15085 1522 aa15.76■□□□□ 0.11
UBA3-208ENST00000465627 SUPT5HO00267 1087 aaKnown RBP15.75■□□□□ 0.11
UBA3-208ENST00000465627 CACNB1Q02641 598 aaPredicted RBP15.74■□□□□ 0.11
UBA3-208ENST00000465627 PEG3Q9GZU2 1588 aa15.73■□□□□ 0.11
UBA3-208ENST00000465627 CYB5RLQ6IPT4 315 aa15.73■□□□□ 0.11
UBA3-208ENST00000465627 WIZO95785 1651 aa15.72■□□□□ 0.11
UBA3-208ENST00000465627 RNF216Q9NWF9 866 aaPredicted RBP15.71■□□□□ 0.11
UBA3-208ENST00000465627 LAMC3Q9Y6N6 1575 aa15.64■□□□□ 0.09
UBA3-208ENST00000465627 ATAD2BQ9ULI0 1458 aa15.61■□□□□ 0.09
UBA3-208ENST00000465627 WDR62O43379 1518 aa15.58■□□□□ 0.09
UBA3-208ENST00000465627 TOP2AP11388 1531 aaKnown RBP15.58■□□□□ 0.08
UBA3-208ENST00000465627 MRC2Q9UBG0 1479 aa15.57■□□□□ 0.08
UBA3-208ENST00000465627 PDS5BQ9NTI5 1447 aa15.56■□□□□ 0.08
UBA3-208ENST00000465627 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
UBA3-208ENST00000465627 ARAP1Q96P48 1450 aa15.54■□□□□ 0.08
UBA3-208ENST00000465627 RNF39Q9H2S5 420 aa15.53■□□□□ 0.08
UBA3-208ENST00000465627 NCBP3Q53F19 620 aaKnown RBP15.48■□□□□ 0.07
UBA3-208ENST00000465627 BAZ1BQ9UIG0 1483 aaKnown RBP15.45■□□□□ 0.06
UBA3-208ENST00000465627 CCDC88BA6NC98 1476 aa15.39■□□□□ 0.05
UBA3-208ENST00000465627 C1QBPQ07021 282 aaKnown RBP15.35■□□□□ 0.05
UBA3-208ENST00000465627 CADPSQ9ULU8 1353 aa15.24■□□□□ 0.03
UBA3-208ENST00000465627 CEP164Q9UPV0 1460 aa15.23■□□□□ 0.03
UBA3-208ENST00000465627 KDM4FA0A1W2PPD8 638 aa15.23■□□□□ 0.03
UBA3-208ENST00000465627 CHD1O14646 1710 aa15.22■□□□□ 0.03
UBA3-208ENST00000465627 ZNF608Q9ULD9 1512 aaPredicted RBP15.19■□□□□ 0.02
UBA3-208ENST00000465627 NPM3O75607 178 aaKnown RBP15.18■□□□□ 0.02
UBA3-208ENST00000465627 LMTK3Q96Q04 1460 aa15.14■□□□□ 0.01
UBA3-208ENST00000465627 URB2Q14146 1524 aaKnown RBP15.14■□□□□ 0.01
UBA3-208ENST00000465627 CFTRP13569 1480 aa15.13■□□□□ 0.01
UBA3-208ENST00000465627 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.12■□□□□ 0.01
UBA3-208ENST00000465627 FANCD2Q9BXW9 1451 aa15.12■□□□□ 0.01
UBA3-208ENST00000465627 FBXO41Q8TF61 875 aa15.09■□□□□ 0.01
UBA3-208ENST00000465627 PRDM2Q13029 1718 aa15.07■□□□□ 0
UBA3-208ENST00000465627 SOCS7O14512 581 aa15.06■□□□□ 0
UBA3-208ENST00000465627 ERCC6L2Q5T890 1561 aa15.05■□□□□ -0
UBA3-208ENST00000465627 ILDR2Q71H61 639 aa15.05■□□□□ -0
UBA3-208ENST00000465627 HECW2Q9P2P5 1572 aa15.01□□□□□ -0.01
UBA3-208ENST00000465627 EIF4G3O43432 1585 aaKnown RBP15.01□□□□□ -0.01
UBA3-208ENST00000465627 FBLN2P98095 1184 aa14.98□□□□□ -0.01
UBA3-208ENST00000465627 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
UBA3-208ENST00000465627 KIF13AQ9H1H9 1805 aa14.98□□□□□ -0.01
UBA3-208ENST00000465627 IFT140Q96RY7 1462 aa14.95□□□□□ -0.02
UBA3-208ENST00000465627 CLASP1Q7Z460 1538 aa14.92□□□□□ -0.02
UBA3-208ENST00000465627 WRNQ14191 1432 aaPredicted RBP eCLIP14.9□□□□□ -0.02
UBA3-208ENST00000465627 SYNJ1O43426 1573 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms