RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 AEBP2Q6ZN18 517 aaPredicted RBP26.45■■□□□ 1.82
HDAC9-220ENST00000461409 CHIC1Q5VXU3 224 aa25.19■■□□□ 1.62
HDAC9-220ENST00000461409 SENP3Q9H4L4 574 aaPredicted RBP22.72■■□□□ 1.23
HDAC9-220ENST00000461409 PHF23Q9BUL5 403 aaPredicted RBP22.35■■□□□ 1.17
HDAC9-220ENST00000461409 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
HDAC9-220ENST00000461409 FOXD1Q16676 465 aa21.14■□□□□ 0.97
HDAC9-220ENST00000461409 PLPPR3Q6T4P5 718 aa20.26■□□□□ 0.83
HDAC9-220ENST00000461409 MSH5O43196 834 aa19.95■□□□□ 0.78
HDAC9-220ENST00000461409 POTEDQ86YR6 584 aa19.81■□□□□ 0.76
HDAC9-220ENST00000461409 PIAS4Q8N2W9 510 aaPredicted RBP19.77■□□□□ 0.76
HDAC9-220ENST00000461409 PPP6R1Q9UPN7 881 aa19.63■□□□□ 0.73
HDAC9-220ENST00000461409 ADRA2BP18089 450 aa19.56■□□□□ 0.72
HDAC9-220ENST00000461409 CCDC180Q9P1Z9 1646 aa19.37■□□□□ 0.69
HDAC9-220ENST00000461409 ABCC9O60706 1549 aa19.29■□□□□ 0.68
HDAC9-220ENST00000461409 RB1CC1Q8TDY2 1594 aa18.42■□□□□ 0.54
HDAC9-220ENST00000461409 NACADO15069 1562 aa18.32■□□□□ 0.52
HDAC9-220ENST00000461409 DCAF8L2P0C7V8 631 aa18.2■□□□□ 0.5
HDAC9-220ENST00000461409 MYO15BQ96JP2 1530 aa18.11■□□□□ 0.49
HDAC9-220ENST00000461409 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
HDAC9-220ENST00000461409 SCAF1Q9H7N4 1312 aaKnown RBP17.98■□□□□ 0.47
HDAC9-220ENST00000461409 MAPK8IP2Q13387 824 aaPredicted RBP17.97■□□□□ 0.47
HDAC9-220ENST00000461409 PABPN1Q86U42 306 aaKnown RBP eCLIP17.96■□□□□ 0.47
HDAC9-220ENST00000461409 DMRT2Q9Y5R5 561 aa17.94■□□□□ 0.46
HDAC9-220ENST00000461409 ZCCHC6Q5VYS8 1495 aaKnown RBP17.93■□□□□ 0.46
HDAC9-220ENST00000461409 UNC13AQ9UPW8 1703 aa17.91■□□□□ 0.46
HDAC9-220ENST00000461409 DCAF1Q9Y4B6 1507 aa17.88■□□□□ 0.45
HDAC9-220ENST00000461409 BICRAQ9NZM4 1560 aa17.83■□□□□ 0.44
HDAC9-220ENST00000461409 PPP4R3CPQ6ZMV5 832 aa17.81■□□□□ 0.44
HDAC9-220ENST00000461409 SHROOM4Q9ULL8 1493 aa17.7■□□□□ 0.42
HDAC9-220ENST00000461409 SCRIBQ14160 1630 aa17.63■□□□□ 0.41
HDAC9-220ENST00000461409 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
HDAC9-220ENST00000461409 EIF4G1Q04637 1599 aaKnown RBP17.42■□□□□ 0.38
HDAC9-220ENST00000461409 CECR2Q9BXF3 1484 aa17.4■□□□□ 0.38
HDAC9-220ENST00000461409 CNKSR2Q8WXI2 1034 aa17.4■□□□□ 0.38
HDAC9-220ENST00000461409 DCAF8L1A6NGE4 600 aa17.33■□□□□ 0.36
HDAC9-220ENST00000461409 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
HDAC9-220ENST00000461409 HOXD11P31277 338 aaPredicted RBP17.21■□□□□ 0.35
HDAC9-220ENST00000461409 NCBP3Q53F19 620 aaKnown RBP17.21■□□□□ 0.35
HDAC9-220ENST00000461409 RNF216Q9NWF9 866 aaPredicted RBP17.16■□□□□ 0.34
HDAC9-220ENST00000461409 NPM3O75607 178 aaKnown RBP17.01■□□□□ 0.31
HDAC9-220ENST00000461409 KCNA4P22459 653 aa17■□□□□ 0.31
HDAC9-220ENST00000461409 RNF39Q9H2S5 420 aa16.94■□□□□ 0.3
HDAC9-220ENST00000461409 NCAPD3P42695 1498 aa16.91■□□□□ 0.3
HDAC9-220ENST00000461409 ATAD2BQ9ULI0 1458 aa16.85■□□□□ 0.29
HDAC9-220ENST00000461409 SMARCA2P51531 1590 aa16.83■□□□□ 0.28
HDAC9-220ENST00000461409 SMARCA4P51532 1647 aa16.83■□□□□ 0.28
HDAC9-220ENST00000461409 BAZ1AQ9NRL2 1556 aaPredicted RBP16.79■□□□□ 0.28
HDAC9-220ENST00000461409 HMGXB3Q12766 1538 aa16.79■□□□□ 0.28
HDAC9-220ENST00000461409 C1QBPQ07021 282 aaKnown RBP16.73■□□□□ 0.27
HDAC9-220ENST00000461409 BAZ1BQ9UIG0 1483 aaKnown RBP16.71■□□□□ 0.27
HDAC9-220ENST00000461409 ERCC6Q03468 1493 aa16.7■□□□□ 0.26
HDAC9-220ENST00000461409 PEG3Q9GZU2 1588 aa16.69■□□□□ 0.26
HDAC9-220ENST00000461409 CUX2O14529 1486 aa16.65■□□□□ 0.26
HDAC9-220ENST00000461409 MROH2BQ7Z745 1585 aa16.63■□□□□ 0.25
HDAC9-220ENST00000461409 NESP48681 1621 aa16.56■□□□□ 0.24
HDAC9-220ENST00000461409 DNAJC5Q9H3Z4 198 aa16.55■□□□□ 0.24
HDAC9-220ENST00000461409 LAMC3Q9Y6N6 1575 aa16.51■□□□□ 0.23
HDAC9-220ENST00000461409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.45■□□□□ 0.22
HDAC9-220ENST00000461409 PDS5BQ9NTI5 1447 aa16.45■□□□□ 0.22
HDAC9-220ENST00000461409 WIZO95785 1651 aa16.4■□□□□ 0.22
HDAC9-220ENST00000461409 CADPSQ9ULU8 1353 aa16.4■□□□□ 0.22
HDAC9-220ENST00000461409 THOC2Q8NI27 1593 aaKnown RBP16.4■□□□□ 0.22
HDAC9-220ENST00000461409 KIF21AQ7Z4S6 1674 aa16.34■□□□□ 0.21
HDAC9-220ENST00000461409 RSF1Q96T23 1441 aaPredicted RBP16.32■□□□□ 0.2
HDAC9-220ENST00000461409 MRC2Q9UBG0 1479 aa16.28■□□□□ 0.2
HDAC9-220ENST00000461409 TOP2AP11388 1531 aaKnown RBP16.26■□□□□ 0.19
HDAC9-220ENST00000461409 CEP164Q9UPV0 1460 aa16.22■□□□□ 0.19
HDAC9-220ENST00000461409 WDR62O43379 1518 aa16.22■□□□□ 0.19
HDAC9-220ENST00000461409 CFTRP13569 1480 aa16.22■□□□□ 0.19
HDAC9-220ENST00000461409 FANCD2Q9BXW9 1451 aa16.21■□□□□ 0.19
HDAC9-220ENST00000461409 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
HDAC9-220ENST00000461409 SLC4A1APQ9BWU0 796 aaKnown RBP16.09■□□□□ 0.17
HDAC9-220ENST00000461409 U3KPZ7 1027 aaPredicted RBP16.08■□□□□ 0.16
HDAC9-220ENST00000461409 CCDC88BA6NC98 1476 aa16.05■□□□□ 0.16
HDAC9-220ENST00000461409 URB2Q14146 1524 aaKnown RBP16.04■□□□□ 0.16
HDAC9-220ENST00000461409 PRDM2Q13029 1718 aa16.02■□□□□ 0.15
HDAC9-220ENST00000461409 CAPN15O75808 1086 aa15.91■□□□□ 0.14
HDAC9-220ENST00000461409 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
HDAC9-220ENST00000461409 IFT140Q96RY7 1462 aa15.91■□□□□ 0.14
HDAC9-220ENST00000461409 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
HDAC9-220ENST00000461409 OSCARQ8IYS5 282 aa15.89■□□□□ 0.13
HDAC9-220ENST00000461409 DNMBPQ6XZF7 1577 aa15.85■□□□□ 0.13
HDAC9-220ENST00000461409 TRIM41Q8WV44 630 aa15.84■□□□□ 0.13
HDAC9-220ENST00000461409 SPINK5Q9NQ38 1064 aaPredicted RBP15.84■□□□□ 0.13
HDAC9-220ENST00000461409 ZNF608Q9ULD9 1512 aaPredicted RBP15.83■□□□□ 0.12
HDAC9-220ENST00000461409 DSG3P32926 999 aa15.8■□□□□ 0.12
HDAC9-220ENST00000461409 EIF4G3O43432 1585 aaKnown RBP15.75■□□□□ 0.11
HDAC9-220ENST00000461409 FOXD4L1Q9NU39 408 aa15.75■□□□□ 0.11
HDAC9-220ENST00000461409 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
HDAC9-220ENST00000461409 TARBP1Q13395 1621 aaKnown RBP15.72■□□□□ 0.11
HDAC9-220ENST00000461409 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
HDAC9-220ENST00000461409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.7■□□□□ 0.1
HDAC9-220ENST00000461409 HNRNPUL2Q1KMD3 747 aaKnown RBP15.7■□□□□ 0.1
HDAC9-220ENST00000461409 AQRO60306 1485 aaKnown RBP eCLIP15.7■□□□□ 0.1
HDAC9-220ENST00000461409 SOGA1O94964 1423 aa15.68■□□□□ 0.1
HDAC9-220ENST00000461409 ZBTB22O15209 634 aa15.67■□□□□ 0.1
HDAC9-220ENST00000461409 APLP2Q06481 763 aa15.67■□□□□ 0.1
HDAC9-220ENST00000461409 RAD54L2Q9Y4B4 1467 aa15.65■□□□□ 0.1
HDAC9-220ENST00000461409 SAMD1Q6SPF0 538 aaPredicted RBP15.64■□□□□ 0.09
HDAC9-220ENST00000461409 FGD5Q6ZNL6 1462 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 145.2 ms