RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NISCHQ9Y2I1 1504 aa22.11■■□□□ 1.13
NPHP4-204ENST00000460696 DCAF8L2P0C7V8 631 aa21.33■■□□□ 1
NPHP4-204ENST00000460696 SHROOM4Q9ULL8 1493 aa20.18■□□□□ 0.82
NPHP4-204ENST00000460696 SUPT5HO00267 1087 aaKnown RBP20.1■□□□□ 0.81
NPHP4-204ENST00000460696 ABCC9O60706 1549 aa19.53■□□□□ 0.72
NPHP4-204ENST00000460696 PABPN1Q86U42 306 aaKnown RBP eCLIP19.08■□□□□ 0.64
NPHP4-204ENST00000460696 EHMT2Q96KQ7 1210 aa18.98■□□□□ 0.63
NPHP4-204ENST00000460696 FAM9AQ8IZU1 332 aaPredicted RBP18.78■□□□□ 0.6
NPHP4-204ENST00000460696 PCGF6Q9BYE7 350 aa18.78■□□□□ 0.6
NPHP4-204ENST00000460696 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
NPHP4-204ENST00000460696 TRIM41Q8WV44 630 aa18.57■□□□□ 0.56
NPHP4-204ENST00000460696 LOC105371045A0A1W2PR82 267 aa18.49■□□□□ 0.55
NPHP4-204ENST00000460696 ZCCHC6Q5VYS8 1495 aaKnown RBP18.49■□□□□ 0.55
NPHP4-204ENST00000460696 TTBK1Q5TCY1 1321 aaPredicted RBP18.31■□□□□ 0.52
NPHP4-204ENST00000460696 CCDC180Q9P1Z9 1646 aa18.28■□□□□ 0.52
NPHP4-204ENST00000460696 HRCP23327 699 aa18.19■□□□□ 0.5
NPHP4-204ENST00000460696 PPARGC1BQ86YN6 1023 aaKnown RBP18.18■□□□□ 0.5
NPHP4-204ENST00000460696 TRIM26Q12899 539 aaPredicted RBP18.09■□□□□ 0.49
NPHP4-204ENST00000460696 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
NPHP4-204ENST00000460696 UBTFP17480 764 aaKnown RBP18■□□□□ 0.47
NPHP4-204ENST00000460696 SCRIBQ14160 1630 aa17.98■□□□□ 0.47
NPHP4-204ENST00000460696 APLP2Q06481 763 aa17.96■□□□□ 0.47
NPHP4-204ENST00000460696 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
NPHP4-204ENST00000460696 CCER1Q8TC90 406 aaPredicted RBP17.92■□□□□ 0.46
NPHP4-204ENST00000460696 ZEB1P37275 1124 aaPredicted RBP17.92■□□□□ 0.46
NPHP4-204ENST00000460696 RB1CC1Q8TDY2 1594 aa17.82■□□□□ 0.44
NPHP4-204ENST00000460696 RSF1Q96T23 1441 aaPredicted RBP17.68■□□□□ 0.42
NPHP4-204ENST00000460696 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
NPHP4-204ENST00000460696 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.63■□□□□ 0.41
NPHP4-204ENST00000460696 FBLN2P98095 1184 aa17.62■□□□□ 0.41
NPHP4-204ENST00000460696 ATP1B4Q9UN42 357 aaPredicted RBP17.62■□□□□ 0.41
NPHP4-204ENST00000460696 NACADO15069 1562 aa17.59■□□□□ 0.41
NPHP4-204ENST00000460696 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
NPHP4-204ENST00000460696 CECR2Q9BXF3 1484 aa17.45■□□□□ 0.38
NPHP4-204ENST00000460696 DNAJC5BQ9UF47 199 aa17.41■□□□□ 0.38
NPHP4-204ENST00000460696 CSRNP3Q8WYN3 585 aa17.4■□□□□ 0.38
NPHP4-204ENST00000460696 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
NPHP4-204ENST00000460696 YTHDC1Q96MU7 727 aaKnown RBP17.36■□□□□ 0.37
NPHP4-204ENST00000460696 ITGAEP38570 1179 aa17.35■□□□□ 0.37
NPHP4-204ENST00000460696 MROH2BQ7Z745 1585 aa17.24■□□□□ 0.35
NPHP4-204ENST00000460696 DIEXFQ68CQ4 756 aaKnown RBP17.21■□□□□ 0.35
NPHP4-204ENST00000460696 ERCC6Q03468 1493 aa17.14■□□□□ 0.33
NPHP4-204ENST00000460696 ARID3CA6NKF2 412 aa17.12■□□□□ 0.33
NPHP4-204ENST00000460696 BAZ1AQ9NRL2 1556 aaPredicted RBP17.11■□□□□ 0.33
NPHP4-204ENST00000460696 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
NPHP4-204ENST00000460696 WIZO95785 1651 aa17.05■□□□□ 0.32
NPHP4-204ENST00000460696 MYT1LQ9UL68 1186 aa17.05■□□□□ 0.32
NPHP4-204ENST00000460696 P3H3Q8IVL6 736 aa17.02■□□□□ 0.32
NPHP4-204ENST00000460696 CEP162Q5TB80 1403 aa17.01■□□□□ 0.31
NPHP4-204ENST00000460696 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
NPHP4-204ENST00000460696 SOGA1O94964 1423 aa16.98■□□□□ 0.31
NPHP4-204ENST00000460696 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
NPHP4-204ENST00000460696 ABCC8Q09428 1581 aa16.97■□□□□ 0.31
NPHP4-204ENST00000460696 FAM50AQ14320 339 aaKnown RBP16.97■□□□□ 0.31
NPHP4-204ENST00000460696 CCDC88BA6NC98 1476 aa16.97■□□□□ 0.31
NPHP4-204ENST00000460696 ZNF316A6NFI3 1004 aaPredicted RBP16.95■□□□□ 0.3
NPHP4-204ENST00000460696 CHMP7Q8WUX9 453 aaPredicted RBP16.91■□□□□ 0.3
NPHP4-204ENST00000460696 CLIP1P30622 1438 aa16.9■□□□□ 0.3
NPHP4-204ENST00000460696 TNIKQ9UKE5 1360 aa16.88■□□□□ 0.29
NPHP4-204ENST00000460696 EEA1Q15075 1411 aa16.88■□□□□ 0.29
NPHP4-204ENST00000460696 GOLGA3Q08378 1498 aa16.86■□□□□ 0.29
NPHP4-204ENST00000460696 GTF3C3Q9Y5Q9 886 aa16.86■□□□□ 0.29
NPHP4-204ENST00000460696 NEUROD1Q13562 356 aa16.85■□□□□ 0.29
NPHP4-204ENST00000460696 ACIN1Q9UKV3 1341 aaKnown RBP16.8■□□□□ 0.28
NPHP4-204ENST00000460696 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
NPHP4-204ENST00000460696 ATAD2BQ9ULI0 1458 aa16.74■□□□□ 0.27
NPHP4-204ENST00000460696 CEP164Q9UPV0 1460 aa16.74■□□□□ 0.27
NPHP4-204ENST00000460696 SMARCA4P51532 1647 aa16.72■□□□□ 0.27
NPHP4-204ENST00000460696 EIF4G1Q04637 1599 aaKnown RBP16.72■□□□□ 0.27
NPHP4-204ENST00000460696 RUSC2Q8N2Y8 1516 aa16.71■□□□□ 0.27
NPHP4-204ENST00000460696 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
NPHP4-204ENST00000460696 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
NPHP4-204ENST00000460696 TRHP20396 242 aaPredicted RBP16.68■□□□□ 0.26
NPHP4-204ENST00000460696 NEFLP07196 543 aa16.66■□□□□ 0.26
NPHP4-204ENST00000460696 NPM1P06748 294 aaKnown RBP eCLIP16.64■□□□□ 0.25
NPHP4-204ENST00000460696 CNGB1Q14028 1251 aaPredicted RBP16.63■□□□□ 0.25
NPHP4-204ENST00000460696 TRIM52Q96A61 297 aa16.63■□□□□ 0.25
NPHP4-204ENST00000460696 TDRD9Q8NDG6 1382 aaKnown RBP16.63■□□□□ 0.25
NPHP4-204ENST00000460696 PDS5BQ9NTI5 1447 aa16.63■□□□□ 0.25
NPHP4-204ENST00000460696 CC2D2AQ9P2K1 1620 aa16.63■□□□□ 0.25
NPHP4-204ENST00000460696 SMARCA2P51531 1590 aa16.62■□□□□ 0.25
NPHP4-204ENST00000460696 MIER1Q8N108 512 aa16.62■□□□□ 0.25
NPHP4-204ENST00000460696 POLR3GLQ9BT43 218 aa16.62■□□□□ 0.25
NPHP4-204ENST00000460696 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
NPHP4-204ENST00000460696 KIF27Q86VH2 1401 aa16.6■□□□□ 0.25
NPHP4-204ENST00000460696 NESP48681 1621 aa16.59■□□□□ 0.25
NPHP4-204ENST00000460696 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.25
NPHP4-204ENST00000460696 KCNH8Q96L42 1107 aa16.53■□□□□ 0.24
NPHP4-204ENST00000460696 VPS8Q8N3P4 1428 aa16.52■□□□□ 0.24
NPHP4-204ENST00000460696 KANK4Q5T7N3 995 aaPredicted RBP16.52■□□□□ 0.23
NPHP4-204ENST00000460696 ZNF777Q9ULD5 760 aaPredicted RBP16.51■□□□□ 0.23
NPHP4-204ENST00000460696 RAPGEF2Q9Y4G8 1499 aa16.49■□□□□ 0.23
NPHP4-204ENST00000460696 CYB5RLQ6IPT4 315 aa16.49■□□□□ 0.23
NPHP4-204ENST00000460696 DDX10Q13206 875 aaKnown RBP16.46■□□□□ 0.23
NPHP4-204ENST00000460696 BCANQ96GW7 911 aa16.46■□□□□ 0.23
NPHP4-204ENST00000460696 CUX2O14529 1486 aa16.45■□□□□ 0.22
NPHP4-204ENST00000460696 HIRIP3Q9BW71 556 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-204ENST00000460696 CHIC2Q9UKJ5 165 aa16.44■□□□□ 0.22
NPHP4-204ENST00000460696 ANP32CO43423 234 aa16.43■□□□□ 0.22
NPHP4-204ENST00000460696 NCAPD3P42695 1498 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms