RNA–Protein interactions for RNA: ENST00000453858.1

SBDSP1-204, Transcript of SBDS, ribosome maturation factor pseudogene 1, humanhuman

BASIC

Gene SBDSP1, Length 737 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SBDSP1-204ENST00000453858 AEBP2Q6ZN18 517 aaPredicted RBP19.11■□□□□ 0.65
SBDSP1-204ENST00000453858 CHIC1Q5VXU3 224 aa18.2■□□□□ 0.5
SBDSP1-204ENST00000453858 SENP3Q9H4L4 574 aaPredicted RBP16.36■□□□□ 0.21
SBDSP1-204ENST00000453858 PHF23Q9BUL5 403 aaPredicted RBP16.12■□□□□ 0.17
SBDSP1-204ENST00000453858 FOXD1Q16676 465 aa15.2■□□□□ 0.02
SBDSP1-204ENST00000453858 PLPPR3Q6T4P5 718 aa14.55□□□□□ -0.08
SBDSP1-204ENST00000453858 DNAJC5BQ9UF47 199 aa14.48□□□□□ -0.09
SBDSP1-204ENST00000453858 NISCHQ9Y2I1 1504 aa14.35□□□□□ -0.11
SBDSP1-204ENST00000453858 MSH5O43196 834 aa14.29□□□□□ -0.12
SBDSP1-204ENST00000453858 ABCC9O60706 1549 aa14.23□□□□□ -0.13
SBDSP1-204ENST00000453858 PPP6R1Q9UPN7 881 aa14.2□□□□□ -0.14
SBDSP1-204ENST00000453858 PIAS4Q8N2W9 510 aaPredicted RBP14.18□□□□□ -0.14
SBDSP1-204ENST00000453858 ADRA2BP18089 450 aa14.12□□□□□ -0.15
SBDSP1-204ENST00000453858 DNAJC5Q9H3Z4 198 aa13.97□□□□□ -0.17
SBDSP1-204ENST00000453858 POTEDQ86YR6 584 aa13.89□□□□□ -0.19
SBDSP1-204ENST00000453858 CCDC180Q9P1Z9 1646 aa13.19□□□□□ -0.3
SBDSP1-204ENST00000453858 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
SBDSP1-204ENST00000453858 RB1CC1Q8TDY2 1594 aa13.05□□□□□ -0.32
SBDSP1-204ENST00000453858 SCAF1Q9H7N4 1312 aaKnown RBP13.03□□□□□ -0.32
SBDSP1-204ENST00000453858 DMRT2Q9Y5R5 561 aa12.97□□□□□ -0.33
SBDSP1-204ENST00000453858 MAPK8IP2Q13387 824 aaPredicted RBP12.96□□□□□ -0.33
SBDSP1-204ENST00000453858 CECR2Q9BXF3 1484 aa12.94□□□□□ -0.34
SBDSP1-204ENST00000453858 BICRAQ9NZM4 1560 aa12.84□□□□□ -0.35
SBDSP1-204ENST00000453858 CC2D2AQ9P2K1 1620 aa12.8□□□□□ -0.36
SBDSP1-204ENST00000453858 NACADO15069 1562 aa12.77□□□□□ -0.36
SBDSP1-204ENST00000453858 PPP4R3CPQ6ZMV5 832 aa12.77□□□□□ -0.37
SBDSP1-204ENST00000453858 TRIM41Q8WV44 630 aa12.77□□□□□ -0.37
SBDSP1-204ENST00000453858 UNC13AQ9UPW8 1703 aa12.76□□□□□ -0.37
SBDSP1-204ENST00000453858 CUX2O14529 1486 aa12.67□□□□□ -0.38
SBDSP1-204ENST00000453858 KCNA4P22459 653 aa12.6□□□□□ -0.39
SBDSP1-204ENST00000453858 NCBP3Q53F19 620 aaKnown RBP12.59□□□□□ -0.39
SBDSP1-204ENST00000453858 EIF4G1Q04637 1599 aaKnown RBP12.53□□□□□ -0.4
SBDSP1-204ENST00000453858 HOXD11P31277 338 aaPredicted RBP12.53□□□□□ -0.4
SBDSP1-204ENST00000453858 CNKSR2Q8WXI2 1034 aa12.52□□□□□ -0.41
SBDSP1-204ENST00000453858 SHROOM4Q9ULL8 1493 aa12.48□□□□□ -0.41
SBDSP1-204ENST00000453858 DCAF8L2P0C7V8 631 aa12.48□□□□□ -0.41
SBDSP1-204ENST00000453858 RNF216Q9NWF9 866 aaPredicted RBP12.42□□□□□ -0.42
SBDSP1-204ENST00000453858 MYO15BQ96JP2 1530 aa12.34□□□□□ -0.43
SBDSP1-204ENST00000453858 DCAF8L1A6NGE4 600 aa12.31□□□□□ -0.44
SBDSP1-204ENST00000453858 ERCC6Q03468 1493 aa12.27□□□□□ -0.44
SBDSP1-204ENST00000453858 NPM3O75607 178 aaKnown RBP12.27□□□□□ -0.45
SBDSP1-204ENST00000453858 CACNB1Q02641 598 aaPredicted RBP12.19□□□□□ -0.46
SBDSP1-204ENST00000453858 RNF39Q9H2S5 420 aa12.18□□□□□ -0.46
SBDSP1-204ENST00000453858 SLC4A1APQ9BWU0 796 aaKnown RBP12.1□□□□□ -0.47
SBDSP1-204ENST00000453858 ILDR1Q86SU0 546 aaPredicted RBP12.06□□□□□ -0.48
SBDSP1-204ENST00000453858 C1QBPQ07021 282 aaKnown RBP12.03□□□□□ -0.48
SBDSP1-204ENST00000453858 SCRIBQ14160 1630 aa12.03□□□□□ -0.48
SBDSP1-204ENST00000453858 OSCARQ8IYS5 282 aa12□□□□□ -0.49
SBDSP1-204ENST00000453858 THOC2Q8NI27 1593 aaKnown RBP12□□□□□ -0.49
SBDSP1-204ENST00000453858 NESP48681 1621 aa11.98□□□□□ -0.49
SBDSP1-204ENST00000453858 NCAPD3P42695 1498 aa11.9□□□□□ -0.5
SBDSP1-204ENST00000453858 TRHP20396 242 aaPredicted RBP11.87□□□□□ -0.51
SBDSP1-204ENST00000453858 RIMBP3CA6NJZ7 1639 aa11.86□□□□□ -0.51
SBDSP1-204ENST00000453858 RIMBP3BA6NNM3 1639 aa11.86□□□□□ -0.51
SBDSP1-204ENST00000453858 RIMBP3Q9UFD9 1639 aa11.86□□□□□ -0.51
SBDSP1-204ENST00000453858 EHMT2Q96KQ7 1210 aa11.85□□□□□ -0.51
SBDSP1-204ENST00000453858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.84□□□□□ -0.51
SBDSP1-204ENST00000453858 BAZ1AQ9NRL2 1556 aaPredicted RBP11.83□□□□□ -0.52
SBDSP1-204ENST00000453858 DCAF1Q9Y4B6 1507 aa11.8□□□□□ -0.52
SBDSP1-204ENST00000453858 CYB5RLQ6IPT4 315 aa11.77□□□□□ -0.53
SBDSP1-204ENST00000453858 ARHGEF11O15085 1522 aa11.75□□□□□ -0.53
SBDSP1-204ENST00000453858 SMARCA2P51531 1590 aa11.75□□□□□ -0.53
SBDSP1-204ENST00000453858 CSRNP3Q8WYN3 585 aa11.69□□□□□ -0.54
SBDSP1-204ENST00000453858 ATAD2BQ9ULI0 1458 aa11.69□□□□□ -0.54
SBDSP1-204ENST00000453858 KIF21AQ7Z4S6 1674 aa11.68□□□□□ -0.54
SBDSP1-204ENST00000453858 PDS5BQ9NTI5 1447 aa11.67□□□□□ -0.54
SBDSP1-204ENST00000453858 LAMC3Q9Y6N6 1575 aa11.67□□□□□ -0.54
SBDSP1-204ENST00000453858 ZCCHC6Q5VYS8 1495 aaKnown RBP11.64□□□□□ -0.55
SBDSP1-204ENST00000453858 FOXD4L1Q9NU39 408 aa11.63□□□□□ -0.55
SBDSP1-204ENST00000453858 WDR62O43379 1518 aa11.63□□□□□ -0.55
SBDSP1-204ENST00000453858 HMGXB3Q12766 1538 aa11.61□□□□□ -0.55
SBDSP1-204ENST00000453858 U3KPZ7 1027 aaPredicted RBP11.61□□□□□ -0.55
SBDSP1-204ENST00000453858 MRC2Q9UBG0 1479 aa11.61□□□□□ -0.55
SBDSP1-204ENST00000453858 ARAP1Q96P48 1450 aa11.59□□□□□ -0.55
SBDSP1-204ENST00000453858 ZBTB22O15209 634 aa11.55□□□□□ -0.56
SBDSP1-204ENST00000453858 SLC4A2P04920 1241 aa11.52□□□□□ -0.57
SBDSP1-204ENST00000453858 CADPSQ9ULU8 1353 aa11.47□□□□□ -0.57
SBDSP1-204ENST00000453858 KDM4FA0A1W2PPD8 638 aa11.45□□□□□ -0.58
SBDSP1-204ENST00000453858 BAZ1BQ9UIG0 1483 aaKnown RBP11.43□□□□□ -0.58
SBDSP1-204ENST00000453858 MYCNP04198 464 aaPredicted RBP11.41□□□□□ -0.58
SBDSP1-204ENST00000453858 SPINK5Q9NQ38 1064 aaPredicted RBP11.41□□□□□ -0.58
SBDSP1-204ENST00000453858 CAPN15O75808 1086 aa11.39□□□□□ -0.59
SBDSP1-204ENST00000453858 DSG3P32926 999 aa11.39□□□□□ -0.59
SBDSP1-204ENST00000453858 RSF1Q96T23 1441 aaPredicted RBP11.37□□□□□ -0.59
SBDSP1-204ENST00000453858 APLP2Q06481 763 aa11.37□□□□□ -0.59
SBDSP1-204ENST00000453858 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.36□□□□□ -0.59
SBDSP1-204ENST00000453858 HNRNPUL2Q1KMD3 747 aaKnown RBP11.36□□□□□ -0.59
SBDSP1-204ENST00000453858 FBXO41Q8TF61 875 aa11.34□□□□□ -0.59
SBDSP1-204ENST00000453858 SMARCA4P51532 1647 aa11.34□□□□□ -0.59
SBDSP1-204ENST00000453858 SOCS7O14512 581 aa11.33□□□□□ -0.6
SBDSP1-204ENST00000453858 ZNF608Q9ULD9 1512 aaPredicted RBP11.33□□□□□ -0.6
SBDSP1-204ENST00000453858 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
SBDSP1-204ENST00000453858 PEG3Q9GZU2 1588 aa11.3□□□□□ -0.6
SBDSP1-204ENST00000453858 ATXN8OSP0DMR3 200 aa11.3□□□□□ -0.6
SBDSP1-204ENST00000453858 URB2Q14146 1524 aaKnown RBP11.29□□□□□ -0.6
SBDSP1-204ENST00000453858 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
SBDSP1-204ENST00000453858 LMTK3Q96Q04 1460 aa11.27□□□□□ -0.6
SBDSP1-204ENST00000453858 FANCD2Q9BXW9 1451 aa11.27□□□□□ -0.6
SBDSP1-204ENST00000453858 ZNF219Q9P2Y4 722 aaPredicted RBP11.27□□□□□ -0.61
SBDSP1-204ENST00000453858 ILDR2Q71H61 639 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms