RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 AEBP2Q6ZN18 517 aaPredicted RBP25.08■■□□□ 1.61
COL28A1-205ENST00000453441 CHIC1Q5VXU3 224 aa24.35■■□□□ 1.49
COL28A1-205ENST00000453441 SENP3Q9H4L4 574 aaPredicted RBP21.42■■□□□ 1.02
COL28A1-205ENST00000453441 PHF23Q9BUL5 403 aaPredicted RBP21.34■■□□□ 1.01
COL28A1-205ENST00000453441 NISCHQ9Y2I1 1504 aa20.79■□□□□ 0.92
COL28A1-205ENST00000453441 FOXD1Q16676 465 aa19.84■□□□□ 0.77
COL28A1-205ENST00000453441 PLPPR3Q6T4P5 718 aa19.71■□□□□ 0.75
COL28A1-205ENST00000453441 PPP6R1Q9UPN7 881 aa18.89■□□□□ 0.61
COL28A1-205ENST00000453441 ADRA2BP18089 450 aa18.86■□□□□ 0.61
COL28A1-205ENST00000453441 PIAS4Q8N2W9 510 aaPredicted RBP18.66■□□□□ 0.58
COL28A1-205ENST00000453441 CCDC180Q9P1Z9 1646 aa18.48■□□□□ 0.55
COL28A1-205ENST00000453441 MSH5O43196 834 aa18.46■□□□□ 0.55
COL28A1-205ENST00000453441 ABCC9O60706 1549 aa17.77■□□□□ 0.43
COL28A1-205ENST00000453441 POTEDQ86YR6 584 aa17.39■□□□□ 0.37
COL28A1-205ENST00000453441 SCAF1Q9H7N4 1312 aaKnown RBP17.39■□□□□ 0.37
COL28A1-205ENST00000453441 ZCCHC6Q5VYS8 1495 aaKnown RBP17.37■□□□□ 0.37
COL28A1-205ENST00000453441 MYO15BQ96JP2 1530 aa17.33■□□□□ 0.37
COL28A1-205ENST00000453441 NACADO15069 1562 aa17.32■□□□□ 0.36
COL28A1-205ENST00000453441 PPP4R3CPQ6ZMV5 832 aa17.3■□□□□ 0.36
COL28A1-205ENST00000453441 DCAF1Q9Y4B6 1507 aa17.29■□□□□ 0.36
COL28A1-205ENST00000453441 RB1CC1Q8TDY2 1594 aa17.28■□□□□ 0.36
COL28A1-205ENST00000453441 DCAF8L2P0C7V8 631 aa17.18■□□□□ 0.34
COL28A1-205ENST00000453441 MAPK8IP2Q13387 824 aaPredicted RBP17.16■□□□□ 0.34
COL28A1-205ENST00000453441 DMRT2Q9Y5R5 561 aa17.04■□□□□ 0.32
COL28A1-205ENST00000453441 CNKSR2Q8WXI2 1034 aa16.91■□□□□ 0.3
COL28A1-205ENST00000453441 NCBP3Q53F19 620 aaKnown RBP16.85■□□□□ 0.29
COL28A1-205ENST00000453441 UNC13AQ9UPW8 1703 aa16.82■□□□□ 0.28
COL28A1-205ENST00000453441 SCRIBQ14160 1630 aa16.75■□□□□ 0.27
COL28A1-205ENST00000453441 SHROOM4Q9ULL8 1493 aa16.69■□□□□ 0.26
COL28A1-205ENST00000453441 BICRAQ9NZM4 1560 aa16.68■□□□□ 0.26
COL28A1-205ENST00000453441 RNF216Q9NWF9 866 aaPredicted RBP16.63■□□□□ 0.25
COL28A1-205ENST00000453441 HOXD11P31277 338 aaPredicted RBP16.62■□□□□ 0.25
COL28A1-205ENST00000453441 KCNA4P22459 653 aa16.61■□□□□ 0.25
COL28A1-205ENST00000453441 PABPN1Q86U42 306 aaKnown RBP eCLIP16.58■□□□□ 0.24
COL28A1-205ENST00000453441 NPM3O75607 178 aaKnown RBP16.53■□□□□ 0.24
COL28A1-205ENST00000453441 DCAF8L1A6NGE4 600 aa16.26■□□□□ 0.19
COL28A1-205ENST00000453441 EIF4G1Q04637 1599 aaKnown RBP16.26■□□□□ 0.19
COL28A1-205ENST00000453441 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
COL28A1-205ENST00000453441 BAZ1AQ9NRL2 1556 aaPredicted RBP16.14■□□□□ 0.17
COL28A1-205ENST00000453441 CC2D2AQ9P2K1 1620 aa16.12■□□□□ 0.17
COL28A1-205ENST00000453441 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
COL28A1-205ENST00000453441 SMARCA4P51532 1647 aa16.09■□□□□ 0.17
COL28A1-205ENST00000453441 SMARCA2P51531 1590 aa16■□□□□ 0.15
COL28A1-205ENST00000453441 PEG3Q9GZU2 1588 aa15.99■□□□□ 0.15
COL28A1-205ENST00000453441 MROH2BQ7Z745 1585 aa15.97■□□□□ 0.15
COL28A1-205ENST00000453441 NCAPD3P42695 1498 aa15.96■□□□□ 0.14
COL28A1-205ENST00000453441 ATAD2BQ9ULI0 1458 aa15.96■□□□□ 0.14
COL28A1-205ENST00000453441 HMGXB3Q12766 1538 aa15.92■□□□□ 0.14
COL28A1-205ENST00000453441 RSF1Q96T23 1441 aaPredicted RBP15.88■□□□□ 0.13
COL28A1-205ENST00000453441 BAZ1BQ9UIG0 1483 aaKnown RBP15.85■□□□□ 0.13
COL28A1-205ENST00000453441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.81■□□□□ 0.12
COL28A1-205ENST00000453441 SLC4A1APQ9BWU0 796 aaKnown RBP15.81■□□□□ 0.12
COL28A1-205ENST00000453441 WIZO95785 1651 aa15.8■□□□□ 0.12
COL28A1-205ENST00000453441 RNF39Q9H2S5 420 aa15.76■□□□□ 0.11
COL28A1-205ENST00000453441 TOP2AP11388 1531 aaKnown RBP15.72■□□□□ 0.11
COL28A1-205ENST00000453441 SLC4A2P04920 1241 aa15.65■□□□□ 0.1
COL28A1-205ENST00000453441 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
COL28A1-205ENST00000453441 LAMC3Q9Y6N6 1575 aa15.53■□□□□ 0.08
COL28A1-205ENST00000453441 SUPT5HO00267 1087 aaKnown RBP15.52■□□□□ 0.08
COL28A1-205ENST00000453441 U3KPZ7 1027 aaPredicted RBP15.51■□□□□ 0.07
COL28A1-205ENST00000453441 CACNB1Q02641 598 aaPredicted RBP15.5■□□□□ 0.07
COL28A1-205ENST00000453441 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
COL28A1-205ENST00000453441 CADPSQ9ULU8 1353 aa15.48■□□□□ 0.07
COL28A1-205ENST00000453441 CFTRP13569 1480 aa15.43■□□□□ 0.06
COL28A1-205ENST00000453441 FOXD4L1Q9NU39 408 aa15.41■□□□□ 0.06
COL28A1-205ENST00000453441 PDS5BQ9NTI5 1447 aa15.41■□□□□ 0.06
COL28A1-205ENST00000453441 NESP48681 1621 aa15.4■□□□□ 0.06
COL28A1-205ENST00000453441 PRDM2Q13029 1718 aa15.37■□□□□ 0.05
COL28A1-205ENST00000453441 ERCC6Q03468 1493 aa15.36■□□□□ 0.05
COL28A1-205ENST00000453441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.35■□□□□ 0.05
COL28A1-205ENST00000453441 HNRNPUL2Q1KMD3 747 aaKnown RBP15.35■□□□□ 0.05
COL28A1-205ENST00000453441 MYCNP04198 464 aaPredicted RBP15.32■□□□□ 0.04
COL28A1-205ENST00000453441 FANCD2Q9BXW9 1451 aa15.28■□□□□ 0.04
COL28A1-205ENST00000453441 KIF21AQ7Z4S6 1674 aa15.28■□□□□ 0.04
COL28A1-205ENST00000453441 CEP164Q9UPV0 1460 aa15.27■□□□□ 0.04
COL28A1-205ENST00000453441 APLP2Q06481 763 aa15.25■□□□□ 0.03
COL28A1-205ENST00000453441 SAMD1Q6SPF0 538 aaPredicted RBP15.25■□□□□ 0.03
COL28A1-205ENST00000453441 ZBTB22O15209 634 aa15.24■□□□□ 0.03
COL28A1-205ENST00000453441 MRC2Q9UBG0 1479 aa15.22■□□□□ 0.03
COL28A1-205ENST00000453441 THOC2Q8NI27 1593 aaKnown RBP15.21■□□□□ 0.03
COL28A1-205ENST00000453441 CUX2O14529 1486 aa15.19■□□□□ 0.02
COL28A1-205ENST00000453441 ABCC8Q09428 1581 aa15.17■□□□□ 0.02
COL28A1-205ENST00000453441 WDR62O43379 1518 aa15.17■□□□□ 0.02
COL28A1-205ENST00000453441 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-205ENST00000453441 CAPN15O75808 1086 aa15.1■□□□□ 0.01
COL28A1-205ENST00000453441 URB2Q14146 1524 aaKnown RBP15.09■□□□□ 0.01
COL28A1-205ENST00000453441 DNMBPQ6XZF7 1577 aa15.09■□□□□ 0.01
COL28A1-205ENST00000453441 TOPBP1Q92547 1522 aa15.06■□□□□ 0
COL28A1-205ENST00000453441 EHMT2Q96KQ7 1210 aa15.04■□□□□ -0
COL28A1-205ENST00000453441 CSRNP3Q8WYN3 585 aa15.03■□□□□ -0
COL28A1-205ENST00000453441 ZNF219Q9P2Y4 722 aaPredicted RBP15.02■□□□□ -0
COL28A1-205ENST00000453441 WRNQ14191 1432 aaPredicted RBP eCLIP15□□□□□ -0.01
COL28A1-205ENST00000453441 CUX1P39880 1505 aa14.99□□□□□ -0.01
COL28A1-205ENST00000453441 IFT140Q96RY7 1462 aa14.96□□□□□ -0.01
COL28A1-205ENST00000453441 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-205ENST00000453441 TOP2BQ02880 1626 aa14.95□□□□□ -0.02
COL28A1-205ENST00000453441 BIVM-ERCC5R4GMW8 1640 aa14.95□□□□□ -0.02
COL28A1-205ENST00000453441 ATXN8OSP0DMR3 200 aa14.95□□□□□ -0.02
COL28A1-205ENST00000453441 POLA1P09884 1462 aaPredicted RBP14.94□□□□□ -0.02
COL28A1-205ENST00000453441 FGD5Q6ZNL6 1462 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms