RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-208ENST00000449234 AEBP2Q6ZN18 517 aaPredicted RBP26.26■■□□□ 1.79
RFX3-208ENST00000449234 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
RFX3-208ENST00000449234 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
RFX3-208ENST00000449234 SENP3Q9H4L4 574 aaPredicted RBP22.41■■□□□ 1.18
RFX3-208ENST00000449234 PHF23Q9BUL5 403 aaPredicted RBP22.22■■□□□ 1.15
RFX3-208ENST00000449234 FOXD1Q16676 465 aa20.78■□□□□ 0.92
RFX3-208ENST00000449234 CCDC180Q9P1Z9 1646 aa20.6■□□□□ 0.89
RFX3-208ENST00000449234 PLPPR3Q6T4P5 718 aa20.42■□□□□ 0.86
RFX3-208ENST00000449234 ZCCHC6Q5VYS8 1495 aaKnown RBP20.3■□□□□ 0.84
RFX3-208ENST00000449234 DCAF1Q9Y4B6 1507 aa19.97■□□□□ 0.79
RFX3-208ENST00000449234 SHROOM4Q9ULL8 1493 aa19.93■□□□□ 0.78
RFX3-208ENST00000449234 PPP6R1Q9UPN7 881 aa19.69■□□□□ 0.74
RFX3-208ENST00000449234 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
RFX3-208ENST00000449234 ADRA2BP18089 450 aa19.61■□□□□ 0.73
RFX3-208ENST00000449234 DCAF8L2P0C7V8 631 aa19.52■□□□□ 0.72
RFX3-208ENST00000449234 MYO15BQ96JP2 1530 aa19.49■□□□□ 0.71
RFX3-208ENST00000449234 PIAS4Q8N2W9 510 aaPredicted RBP19.47■□□□□ 0.71
RFX3-208ENST00000449234 MSH5O43196 834 aa19.38■□□□□ 0.69
RFX3-208ENST00000449234 ABCC9O60706 1549 aa19.09■□□□□ 0.65
RFX3-208ENST00000449234 NACADO15069 1562 aa19.06■□□□□ 0.64
RFX3-208ENST00000449234 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
RFX3-208ENST00000449234 SCRIBQ14160 1630 aa18.9■□□□□ 0.62
RFX3-208ENST00000449234 RB1CC1Q8TDY2 1594 aa18.79■□□□□ 0.6
RFX3-208ENST00000449234 HRCP23327 699 aa18.63■□□□□ 0.57
RFX3-208ENST00000449234 CECR2Q9BXF3 1484 aa18.52■□□□□ 0.56
RFX3-208ENST00000449234 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.56
RFX3-208ENST00000449234 TRIM41Q8WV44 630 aa18.51■□□□□ 0.55
RFX3-208ENST00000449234 LOC105371045A0A1W2PR82 267 aa18.5■□□□□ 0.55
RFX3-208ENST00000449234 BAZ1AQ9NRL2 1556 aaPredicted RBP18.5■□□□□ 0.55
RFX3-208ENST00000449234 PCGF6Q9BYE7 350 aa18.45■□□□□ 0.54
RFX3-208ENST00000449234 TRIM26Q12899 539 aaPredicted RBP18.41■□□□□ 0.54
RFX3-208ENST00000449234 WIZO95785 1651 aa18.37■□□□□ 0.53
RFX3-208ENST00000449234 TOP2AP11388 1531 aaKnown RBP18.28■□□□□ 0.52
RFX3-208ENST00000449234 SMARCA4P51532 1647 aa18.26■□□□□ 0.51
RFX3-208ENST00000449234 EIF4G1Q04637 1599 aaKnown RBP18.22■□□□□ 0.51
RFX3-208ENST00000449234 POTEDQ86YR6 584 aa18.22■□□□□ 0.51
RFX3-208ENST00000449234 ZEB1P37275 1124 aaPredicted RBP18.2■□□□□ 0.5
RFX3-208ENST00000449234 UNC13AQ9UPW8 1703 aa18.18■□□□□ 0.5
RFX3-208ENST00000449234 CCDC88BA6NC98 1476 aa18.12■□□□□ 0.49
RFX3-208ENST00000449234 SMARCA2P51531 1590 aa18.1■□□□□ 0.49
RFX3-208ENST00000449234 PEG3Q9GZU2 1588 aa18.08■□□□□ 0.49
RFX3-208ENST00000449234 FAM9AQ8IZU1 332 aaPredicted RBP18.06■□□□□ 0.48
RFX3-208ENST00000449234 EEA1Q15075 1411 aa18.06■□□□□ 0.48
RFX3-208ENST00000449234 SCAF1Q9H7N4 1312 aaKnown RBP18.05■□□□□ 0.48
RFX3-208ENST00000449234 BICRAQ9NZM4 1560 aa18.04■□□□□ 0.48
RFX3-208ENST00000449234 WRNQ14191 1432 aaPredicted RBP eCLIP17.9■□□□□ 0.46
RFX3-208ENST00000449234 PPP4R3CPQ6ZMV5 832 aa17.9■□□□□ 0.46
RFX3-208ENST00000449234 MAPK8IP2Q13387 824 aaPredicted RBP17.88■□□□□ 0.45
RFX3-208ENST00000449234 TNIKQ9UKE5 1360 aa17.88■□□□□ 0.45
RFX3-208ENST00000449234 PPARGC1BQ86YN6 1023 aaKnown RBP17.86■□□□□ 0.45
RFX3-208ENST00000449234 ABCC8Q09428 1581 aa17.84■□□□□ 0.45
RFX3-208ENST00000449234 DMRT2Q9Y5R5 561 aa17.84■□□□□ 0.45
RFX3-208ENST00000449234 CSRNP3Q8WYN3 585 aa17.83■□□□□ 0.44
RFX3-208ENST00000449234 ATAD2BQ9ULI0 1458 aa17.82■□□□□ 0.44
RFX3-208ENST00000449234 PABPN1Q86U42 306 aaKnown RBP eCLIP17.8■□□□□ 0.44
RFX3-208ENST00000449234 BAZ1BQ9UIG0 1483 aaKnown RBP17.74■□□□□ 0.43
RFX3-208ENST00000449234 SOGA1O94964 1423 aa17.73■□□□□ 0.43
RFX3-208ENST00000449234 GOLGA3Q08378 1498 aa17.72■□□□□ 0.43
RFX3-208ENST00000449234 CEP162Q5TB80 1403 aa17.72■□□□□ 0.43
RFX3-208ENST00000449234 CEP164Q9UPV0 1460 aa17.66■□□□□ 0.42
RFX3-208ENST00000449234 KIF21BO75037 1637 aa17.65■□□□□ 0.42
RFX3-208ENST00000449234 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
RFX3-208ENST00000449234 NCAPD3P42695 1498 aa17.62■□□□□ 0.41
RFX3-208ENST00000449234 UBTFP17480 764 aaKnown RBP17.6■□□□□ 0.41
RFX3-208ENST00000449234 HMGXB3Q12766 1538 aa17.6■□□□□ 0.41
RFX3-208ENST00000449234 RUSC2Q8N2Y8 1516 aa17.6■□□□□ 0.41
RFX3-208ENST00000449234 SYNJ1O43426 1573 aa17.57■□□□□ 0.4
RFX3-208ENST00000449234 TOP2BQ02880 1626 aa17.54■□□□□ 0.4
RFX3-208ENST00000449234 CNKSR2Q8WXI2 1034 aa17.53■□□□□ 0.4
RFX3-208ENST00000449234 BIVM-ERCC5R4GMW8 1640 aa17.5■□□□□ 0.39
RFX3-208ENST00000449234 CCER1Q8TC90 406 aaPredicted RBP17.48■□□□□ 0.39
RFX3-208ENST00000449234 CLIP1P30622 1438 aa17.45■□□□□ 0.38
RFX3-208ENST00000449234 ERICH3Q5RHP9 1530 aa17.42■□□□□ 0.38
RFX3-208ENST00000449234 VPS8Q8N3P4 1428 aa17.41■□□□□ 0.38
RFX3-208ENST00000449234 CFTRP13569 1480 aa17.38■□□□□ 0.37
RFX3-208ENST00000449234 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.38■□□□□ 0.37
RFX3-208ENST00000449234 NCBP3Q53F19 620 aaKnown RBP17.37■□□□□ 0.37
RFX3-208ENST00000449234 PRXQ9BXM0 1461 aa17.37■□□□□ 0.37
RFX3-208ENST00000449234 HOXD11P31277 338 aaPredicted RBP17.35■□□□□ 0.37
RFX3-208ENST00000449234 APLP2Q06481 763 aa17.34■□□□□ 0.37
RFX3-208ENST00000449234 RAPGEF2Q9Y4G8 1499 aa17.34■□□□□ 0.37
RFX3-208ENST00000449234 KIF27Q86VH2 1401 aa17.3■□□□□ 0.36
RFX3-208ENST00000449234 RNF216Q9NWF9 866 aaPredicted RBP17.3■□□□□ 0.36
RFX3-208ENST00000449234 CUX1P39880 1505 aa17.26■□□□□ 0.35
RFX3-208ENST00000449234 PRDM2Q13029 1718 aa17.25■□□□□ 0.35
RFX3-208ENST00000449234 CLSPNQ9HAW4 1339 aa17.21■□□□□ 0.34
RFX3-208ENST00000449234 CADPSQ9ULU8 1353 aa17.19■□□□□ 0.34
RFX3-208ENST00000449234 ZNF316A6NFI3 1004 aaPredicted RBP17.14■□□□□ 0.33
RFX3-208ENST00000449234 DIEXFQ68CQ4 756 aaKnown RBP17.14■□□□□ 0.33
RFX3-208ENST00000449234 ARAP1Q96P48 1450 aa17.13■□□□□ 0.33
RFX3-208ENST00000449234 TTBK1Q5TCY1 1321 aaPredicted RBP17.1■□□□□ 0.33
RFX3-208ENST00000449234 MAP3K1Q13233 1512 aa17.1■□□□□ 0.33
RFX3-208ENST00000449234 IGF1RP08069 1367 aa17.08■□□□□ 0.32
RFX3-208ENST00000449234 NPM3O75607 178 aaKnown RBP17.08■□□□□ 0.32
RFX3-208ENST00000449234 RRBP1Q9P2E9 1410 aaKnown RBP17.05■□□□□ 0.32
RFX3-208ENST00000449234 HNRNPUL2Q1KMD3 747 aaKnown RBP17.05■□□□□ 0.32
RFX3-208ENST00000449234 CENPBP07199 599 aaPredicted RBP17.03■□□□□ 0.32
RFX3-208ENST00000449234 KCNA4P22459 653 aa17.03■□□□□ 0.32
RFX3-208ENST00000449234 ARHGAP35Q9NRY4 1499 aa17.02■□□□□ 0.32
RFX3-208ENST00000449234 CUX2O14529 1486 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms