RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 NISCHQ9Y2I1 1504 aa31.66■■■□□ 2.66
SCARF1-203ENST00000434376 SHROOM4Q9ULL8 1493 aa28.31■■■□□ 2.12
SCARF1-203ENST00000434376 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
SCARF1-203ENST00000434376 SUPT5HO00267 1087 aaKnown RBP27.72■■■□□ 2.03
SCARF1-203ENST00000434376 ZCCHC6Q5VYS8 1495 aaKnown RBP26.57■■□□□ 1.84
SCARF1-203ENST00000434376 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
SCARF1-203ENST00000434376 EHMT2Q96KQ7 1210 aa26.19■■□□□ 1.78
SCARF1-203ENST00000434376 CHIC1Q5VXU3 224 aa26.12■■□□□ 1.77
SCARF1-203ENST00000434376 ABCC9O60706 1549 aa26.1■■□□□ 1.77
SCARF1-203ENST00000434376 LOC105371045A0A1W2PR82 267 aa25.89■■□□□ 1.74
SCARF1-203ENST00000434376 FAM9AQ8IZU1 332 aaPredicted RBP25.87■■□□□ 1.73
SCARF1-203ENST00000434376 MYO15BQ96JP2 1530 aa25.79■■□□□ 1.72
SCARF1-203ENST00000434376 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
SCARF1-203ENST00000434376 PCGF6Q9BYE7 350 aa25.64■■□□□ 1.7
SCARF1-203ENST00000434376 TRIM41Q8WV44 630 aa25.43■■□□□ 1.66
SCARF1-203ENST00000434376 PABPN1Q86U42 306 aaKnown RBP eCLIP25.37■■□□□ 1.65
SCARF1-203ENST00000434376 DCAF1Q9Y4B6 1507 aa25.31■■□□□ 1.64
SCARF1-203ENST00000434376 PPARGC1BQ86YN6 1023 aaKnown RBP25.26■■□□□ 1.63
SCARF1-203ENST00000434376 RSF1Q96T23 1441 aaPredicted RBP25.23■■□□□ 1.63
SCARF1-203ENST00000434376 CECR2Q9BXF3 1484 aa25.21■■□□□ 1.63
SCARF1-203ENST00000434376 TTBK1Q5TCY1 1321 aaPredicted RBP25.15■■□□□ 1.62
SCARF1-203ENST00000434376 HRCP23327 699 aa25.12■■□□□ 1.61
SCARF1-203ENST00000434376 RB1CC1Q8TDY2 1594 aa24.94■■□□□ 1.58
SCARF1-203ENST00000434376 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
SCARF1-203ENST00000434376 RANGAP1P46060 587 aaPredicted RBP24.79■■□□□ 1.56
SCARF1-203ENST00000434376 NACADO15069 1562 aa24.78■■□□□ 1.56
SCARF1-203ENST00000434376 WIZO95785 1651 aa24.69■■□□□ 1.54
SCARF1-203ENST00000434376 TRIM26Q12899 539 aaPredicted RBP24.6■■□□□ 1.53
SCARF1-203ENST00000434376 UBTFP17480 764 aaKnown RBP24.5■■□□□ 1.51
SCARF1-203ENST00000434376 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
SCARF1-203ENST00000434376 BAZ1AQ9NRL2 1556 aaPredicted RBP24.28■■□□□ 1.48
SCARF1-203ENST00000434376 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.28■■□□□ 1.48
SCARF1-203ENST00000434376 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
SCARF1-203ENST00000434376 SOGA1O94964 1423 aa24.17■■□□□ 1.46
SCARF1-203ENST00000434376 CCER1Q8TC90 406 aaPredicted RBP24.1■■□□□ 1.45
SCARF1-203ENST00000434376 SMARCA4P51532 1647 aa24.09■■□□□ 1.45
SCARF1-203ENST00000434376 CSRNP3Q8WYN3 585 aa24.08■■□□□ 1.45
SCARF1-203ENST00000434376 RUSC2Q8N2Y8 1516 aa24.08■■□□□ 1.45
SCARF1-203ENST00000434376 UNC13AQ9UPW8 1703 aa24.01■■□□□ 1.43
SCARF1-203ENST00000434376 TOP2AP11388 1531 aaKnown RBP23.96■■□□□ 1.43
SCARF1-203ENST00000434376 HNRNPUL2Q1KMD3 747 aaKnown RBP23.96■■□□□ 1.43
SCARF1-203ENST00000434376 SMARCA2P51531 1590 aa23.92■■□□□ 1.42
SCARF1-203ENST00000434376 BICRAQ9NZM4 1560 aa23.91■■□□□ 1.42
SCARF1-203ENST00000434376 BAZ1BQ9UIG0 1483 aaKnown RBP23.84■■□□□ 1.41
SCARF1-203ENST00000434376 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.41
SCARF1-203ENST00000434376 APLP2Q06481 763 aa23.81■■□□□ 1.4
SCARF1-203ENST00000434376 CEP162Q5TB80 1403 aa23.8■■□□□ 1.4
SCARF1-203ENST00000434376 ATAD2BQ9ULI0 1458 aa23.76■■□□□ 1.39
SCARF1-203ENST00000434376 SCAF1Q9H7N4 1312 aaKnown RBP23.74■■□□□ 1.39
SCARF1-203ENST00000434376 ATP1B4Q9UN42 357 aaPredicted RBP23.72■■□□□ 1.39
SCARF1-203ENST00000434376 ZEB1P37275 1124 aaPredicted RBP23.7■■□□□ 1.38
SCARF1-203ENST00000434376 ITGAEP38570 1179 aa23.69■■□□□ 1.38
SCARF1-203ENST00000434376 PELP1Q8IZL8 1130 aaKnown RBP23.68■■□□□ 1.38
SCARF1-203ENST00000434376 P3H3Q8IVL6 736 aa23.59■■□□□ 1.37
SCARF1-203ENST00000434376 EIF4G1Q04637 1599 aaKnown RBP23.57■■□□□ 1.36
SCARF1-203ENST00000434376 TNIKQ9UKE5 1360 aa23.53■■□□□ 1.36
SCARF1-203ENST00000434376 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
SCARF1-203ENST00000434376 CLIP1P30622 1438 aa23.47■■□□□ 1.35
SCARF1-203ENST00000434376 GOLGA3Q08378 1498 aa23.47■■□□□ 1.35
SCARF1-203ENST00000434376 RAPGEF2Q9Y4G8 1499 aa23.46■■□□□ 1.35
SCARF1-203ENST00000434376 DNAJC5BQ9UF47 199 aa23.4■■□□□ 1.34
SCARF1-203ENST00000434376 YTHDC1Q96MU7 727 aaKnown RBP23.37■■□□□ 1.33
SCARF1-203ENST00000434376 KANK4Q5T7N3 995 aaPredicted RBP23.31■■□□□ 1.32
SCARF1-203ENST00000434376 EEA1Q15075 1411 aa23.31■■□□□ 1.32
SCARF1-203ENST00000434376 CEP164Q9UPV0 1460 aa23.31■■□□□ 1.32
SCARF1-203ENST00000434376 NEUROD1Q13562 356 aa23.27■■□□□ 1.32
SCARF1-203ENST00000434376 DIEXFQ68CQ4 756 aaKnown RBP23.26■■□□□ 1.31
SCARF1-203ENST00000434376 ARID3CA6NKF2 412 aa23.22■■□□□ 1.31
SCARF1-203ENST00000434376 GTF3C3Q9Y5Q9 886 aa23.22■■□□□ 1.31
SCARF1-203ENST00000434376 ACIN1Q9UKV3 1341 aaKnown RBP23.2■■□□□ 1.3
SCARF1-203ENST00000434376 PEG3Q9GZU2 1588 aa23.16■■□□□ 1.3
SCARF1-203ENST00000434376 FAM50AQ14320 339 aaKnown RBP23.13■■□□□ 1.29
SCARF1-203ENST00000434376 NCAPD3P42695 1498 aa23.13■■□□□ 1.29
SCARF1-203ENST00000434376 CUX2O14529 1486 aa23.12■■□□□ 1.29
SCARF1-203ENST00000434376 CENPBP07199 599 aaPredicted RBP23.1■■□□□ 1.29
SCARF1-203ENST00000434376 KIF27Q86VH2 1401 aa23.09■■□□□ 1.29
SCARF1-203ENST00000434376 VPS8Q8N3P4 1428 aa23.08■■□□□ 1.29
SCARF1-203ENST00000434376 CUX1P39880 1505 aa23.08■■□□□ 1.28
SCARF1-203ENST00000434376 NESP48681 1621 aa23.05■■□□□ 1.28
SCARF1-203ENST00000434376 CADPSQ9ULU8 1353 aa23.02■■□□□ 1.28
SCARF1-203ENST00000434376 ZNF316A6NFI3 1004 aaPredicted RBP22.96■■□□□ 1.27
SCARF1-203ENST00000434376 KIF21BO75037 1637 aa22.96■■□□□ 1.27
SCARF1-203ENST00000434376 CFTRP13569 1480 aa22.95■■□□□ 1.27
SCARF1-203ENST00000434376 TOP2BQ02880 1626 aa22.95■■□□□ 1.26
SCARF1-203ENST00000434376 RAD54L2Q9Y4B4 1467 aa22.95■■□□□ 1.26
SCARF1-203ENST00000434376 CARMIL1Q5VZK9 1371 aa22.94■■□□□ 1.26
SCARF1-203ENST00000434376 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
SCARF1-203ENST00000434376 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
SCARF1-203ENST00000434376 IGF1RP08069 1367 aa22.91■■□□□ 1.26
SCARF1-203ENST00000434376 CC2D2AQ9P2K1 1620 aa22.9■■□□□ 1.26
SCARF1-203ENST00000434376 FGD5Q6ZNL6 1462 aa22.87■■□□□ 1.25
SCARF1-203ENST00000434376 MIER1Q8N108 512 aa22.86■■□□□ 1.25
SCARF1-203ENST00000434376 HMGXB3Q12766 1538 aa22.84■■□□□ 1.25
SCARF1-203ENST00000434376 HIRIP3Q9BW71 556 aaPredicted RBP22.84■■□□□ 1.25
SCARF1-203ENST00000434376 PRXQ9BXM0 1461 aa22.84■■□□□ 1.25
SCARF1-203ENST00000434376 FANCD2Q9BXW9 1451 aa22.83■■□□□ 1.25
SCARF1-203ENST00000434376 FBLN2P98095 1184 aa22.79■■□□□ 1.24
SCARF1-203ENST00000434376 FHOD3Q2V2M9 1422 aa22.75■■□□□ 1.23
SCARF1-203ENST00000434376 SIN3AQ96ST3 1273 aa22.74■■□□□ 1.23
SCARF1-203ENST00000434376 ARHGAP35Q9NRY4 1499 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms