RNA–Protein interactions for RNA: ENST00000429456.1

LINC01238-203, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 2,170 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-203ENST00000429456 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
LINC01238-203ENST00000429456 CCDC180Q9P1Z9 1646 aa20.25■□□□□ 0.83
LINC01238-203ENST00000429456 SHROOM4Q9ULL8 1493 aa20.19■□□□□ 0.82
LINC01238-203ENST00000429456 ZCCHC6Q5VYS8 1495 aaKnown RBP20.15■□□□□ 0.82
LINC01238-203ENST00000429456 SUPT5HO00267 1087 aaKnown RBP19.84■□□□□ 0.77
LINC01238-203ENST00000429456 DCAF1Q9Y4B6 1507 aa19.58■□□□□ 0.73
LINC01238-203ENST00000429456 DCAF8L2P0C7V8 631 aa19.53■□□□□ 0.72
LINC01238-203ENST00000429456 CHIC1Q5VXU3 224 aa19.41■□□□□ 0.7
LINC01238-203ENST00000429456 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
LINC01238-203ENST00000429456 ABCC9O60706 1549 aa19.03■□□□□ 0.64
LINC01238-203ENST00000429456 HRCP23327 699 aa18.93■□□□□ 0.62
LINC01238-203ENST00000429456 SCRIBQ14160 1630 aa18.89■□□□□ 0.61
LINC01238-203ENST00000429456 RSF1Q96T23 1441 aaPredicted RBP18.83■□□□□ 0.61
LINC01238-203ENST00000429456 PCGF6Q9BYE7 350 aa18.81■□□□□ 0.6
LINC01238-203ENST00000429456 LOC105371045A0A1W2PR82 267 aa18.77■□□□□ 0.6
LINC01238-203ENST00000429456 NACADO15069 1562 aa18.68■□□□□ 0.58
LINC01238-203ENST00000429456 RB1CC1Q8TDY2 1594 aa18.67■□□□□ 0.58
LINC01238-203ENST00000429456 TRIM41Q8WV44 630 aa18.52■□□□□ 0.56
LINC01238-203ENST00000429456 CECR2Q9BXF3 1484 aa18.51■□□□□ 0.55
LINC01238-203ENST00000429456 TRIM26Q12899 539 aaPredicted RBP18.51■□□□□ 0.55
LINC01238-203ENST00000429456 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
LINC01238-203ENST00000429456 PPARGC1BQ86YN6 1023 aaKnown RBP18.45■□□□□ 0.54
LINC01238-203ENST00000429456 WIZO95785 1651 aa18.38■□□□□ 0.53
LINC01238-203ENST00000429456 BAZ1AQ9NRL2 1556 aaPredicted RBP18.31■□□□□ 0.52
LINC01238-203ENST00000429456 FAM9AQ8IZU1 332 aaPredicted RBP18.3■□□□□ 0.52
LINC01238-203ENST00000429456 AEBP2Q6ZN18 517 aaPredicted RBP18.27■□□□□ 0.52
LINC01238-203ENST00000429456 EIF4G1Q04637 1599 aaKnown RBP18.23■□□□□ 0.51
LINC01238-203ENST00000429456 ZEB1P37275 1124 aaPredicted RBP18.16■□□□□ 0.5
LINC01238-203ENST00000429456 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
LINC01238-203ENST00000429456 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
LINC01238-203ENST00000429456 UNC13AQ9UPW8 1703 aa18.09■□□□□ 0.49
LINC01238-203ENST00000429456 EHMT2Q96KQ7 1210 aa18.08■□□□□ 0.49
LINC01238-203ENST00000429456 CCDC88BA6NC98 1476 aa18.02■□□□□ 0.48
LINC01238-203ENST00000429456 SMARCA2P51531 1590 aa18.02■□□□□ 0.48
LINC01238-203ENST00000429456 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
LINC01238-203ENST00000429456 BICRAQ9NZM4 1560 aa17.84■□□□□ 0.45
LINC01238-203ENST00000429456 WRNQ14191 1432 aaPredicted RBP eCLIP17.84■□□□□ 0.45
LINC01238-203ENST00000429456 SOGA1O94964 1423 aa17.81■□□□□ 0.44
LINC01238-203ENST00000429456 EEA1Q15075 1411 aa17.81■□□□□ 0.44
LINC01238-203ENST00000429456 PEG3Q9GZU2 1588 aa17.8■□□□□ 0.44
LINC01238-203ENST00000429456 TNIKQ9UKE5 1360 aa17.79■□□□□ 0.44
LINC01238-203ENST00000429456 CEP162Q5TB80 1403 aa17.78■□□□□ 0.44
LINC01238-203ENST00000429456 PABPN1Q86U42 306 aaKnown RBP eCLIP17.73■□□□□ 0.43
LINC01238-203ENST00000429456 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
LINC01238-203ENST00000429456 RUSC2Q8N2Y8 1516 aa17.72■□□□□ 0.43
LINC01238-203ENST00000429456 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.69■□□□□ 0.42
LINC01238-203ENST00000429456 GOLGA3Q08378 1498 aa17.66■□□□□ 0.42
LINC01238-203ENST00000429456 CCER1Q8TC90 406 aaPredicted RBP17.66■□□□□ 0.42
LINC01238-203ENST00000429456 ATAD2BQ9ULI0 1458 aa17.61■□□□□ 0.41
LINC01238-203ENST00000429456 UBTFP17480 764 aaKnown RBP17.61■□□□□ 0.41
LINC01238-203ENST00000429456 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
LINC01238-203ENST00000429456 KIF21BO75037 1637 aa17.57■□□□□ 0.4
LINC01238-203ENST00000429456 CEP164Q9UPV0 1460 aa17.55■□□□□ 0.4
LINC01238-203ENST00000429456 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
LINC01238-203ENST00000429456 TTBK1Q5TCY1 1321 aaPredicted RBP17.54■□□□□ 0.4
LINC01238-203ENST00000429456 SCAF1Q9H7N4 1312 aaKnown RBP17.45■□□□□ 0.38
LINC01238-203ENST00000429456 CLIP1P30622 1438 aa17.43■□□□□ 0.38
LINC01238-203ENST00000429456 TOP2BQ02880 1626 aa17.41■□□□□ 0.38
LINC01238-203ENST00000429456 VPS8Q8N3P4 1428 aa17.39■□□□□ 0.37
LINC01238-203ENST00000429456 RAPGEF2Q9Y4G8 1499 aa17.39■□□□□ 0.37
LINC01238-203ENST00000429456 DIEXFQ68CQ4 756 aaKnown RBP17.37■□□□□ 0.37
LINC01238-203ENST00000429456 BIVM-ERCC5R4GMW8 1640 aa17.37■□□□□ 0.37
LINC01238-203ENST00000429456 ACIN1Q9UKV3 1341 aaKnown RBP17.29■□□□□ 0.36
LINC01238-203ENST00000429456 HMGXB3Q12766 1538 aa17.29■□□□□ 0.36
LINC01238-203ENST00000429456 ERICH3Q5RHP9 1530 aa17.28■□□□□ 0.36
LINC01238-203ENST00000429456 NCAPD3P42695 1498 aa17.27■□□□□ 0.36
LINC01238-203ENST00000429456 PRXQ9BXM0 1461 aa17.25■□□□□ 0.35
LINC01238-203ENST00000429456 ZNF316A6NFI3 1004 aaPredicted RBP17.25■□□□□ 0.35
LINC01238-203ENST00000429456 HNRNPUL2Q1KMD3 747 aaKnown RBP17.25■□□□□ 0.35
LINC01238-203ENST00000429456 APLP2Q06481 763 aa17.24■□□□□ 0.35
LINC01238-203ENST00000429456 NEUROD1Q13562 356 aa17.23■□□□□ 0.35
LINC01238-203ENST00000429456 PELP1Q8IZL8 1130 aaKnown RBP17.22■□□□□ 0.35
LINC01238-203ENST00000429456 CUX1P39880 1505 aa17.2■□□□□ 0.34
LINC01238-203ENST00000429456 CENPBP07199 599 aaPredicted RBP17.18■□□□□ 0.34
LINC01238-203ENST00000429456 ARAP1Q96P48 1450 aa17.17■□□□□ 0.34
LINC01238-203ENST00000429456 RANGAP1P46060 587 aaPredicted RBP17.16■□□□□ 0.34
LINC01238-203ENST00000429456 CFTRP13569 1480 aa17.15■□□□□ 0.34
LINC01238-203ENST00000429456 KIF27Q86VH2 1401 aa17.13■□□□□ 0.33
LINC01238-203ENST00000429456 PRDM2Q13029 1718 aa17.07■□□□□ 0.32
LINC01238-203ENST00000429456 GTF3C3Q9Y5Q9 886 aa17.05■□□□□ 0.32
LINC01238-203ENST00000429456 CLSPNQ9HAW4 1339 aa17.04■□□□□ 0.32
LINC01238-203ENST00000429456 KANK4Q5T7N3 995 aaPredicted RBP17.04■□□□□ 0.32
LINC01238-203ENST00000429456 RRBP1Q9P2E9 1410 aaKnown RBP17.02■□□□□ 0.32
LINC01238-203ENST00000429456 DHX57Q6P158 1386 aaKnown RBP17.01■□□□□ 0.31
LINC01238-203ENST00000429456 ARHGAP35Q9NRY4 1499 aa17.01■□□□□ 0.31
LINC01238-203ENST00000429456 MIER1Q8N108 512 aa16.98■□□□□ 0.31
LINC01238-203ENST00000429456 MYT1Q01538 1121 aa16.95■□□□□ 0.3
LINC01238-203ENST00000429456 CUX2O14529 1486 aa16.95■□□□□ 0.3
LINC01238-203ENST00000429456 IGF1RP08069 1367 aa16.94■□□□□ 0.3
LINC01238-203ENST00000429456 CADPSQ9ULU8 1353 aa16.92■□□□□ 0.3
LINC01238-203ENST00000429456 CCNB3Q8WWL7 1395 aa16.91■□□□□ 0.3
LINC01238-203ENST00000429456 YTHDC1Q96MU7 727 aaKnown RBP16.89■□□□□ 0.29
LINC01238-203ENST00000429456 MAP3K1Q13233 1512 aa16.88■□□□□ 0.29
LINC01238-203ENST00000429456 FGD5Q6ZNL6 1462 aa16.87■□□□□ 0.29
LINC01238-203ENST00000429456 CARMIL1Q5VZK9 1371 aa16.86■□□□□ 0.29
LINC01238-203ENST00000429456 TIAM1Q13009 1591 aa16.85■□□□□ 0.29
LINC01238-203ENST00000429456 LRRC9Q6ZRR7 1453 aa16.77■□□□□ 0.28
LINC01238-203ENST00000429456 CC2D2AQ9P2K1 1620 aa16.77■□□□□ 0.27
LINC01238-203ENST00000429456 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
LINC01238-203ENST00000429456 RAB3GAP2Q9H2M9 1393 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms