RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NISCHQ9Y2I1 1504 aa20.69■□□□□ 0.9
USP54-204ENST00000422491 HRCP23327 699 aa18.13■□□□□ 0.49
USP54-204ENST00000422491 SHROOM4Q9ULL8 1493 aa18.04■□□□□ 0.48
USP54-204ENST00000422491 SUPT5HO00267 1087 aaKnown RBP17.92■□□□□ 0.46
USP54-204ENST00000422491 MYO15BQ96JP2 1530 aa17.86■□□□□ 0.45
USP54-204ENST00000422491 CHIC1Q5VXU3 224 aa17.72■□□□□ 0.43
USP54-204ENST00000422491 PCGF6Q9BYE7 350 aa17.72■□□□□ 0.43
USP54-204ENST00000422491 PPARGC1BQ86YN6 1023 aaKnown RBP17.67■□□□□ 0.42
USP54-204ENST00000422491 ZCCHC6Q5VYS8 1495 aaKnown RBP17.62■□□□□ 0.41
USP54-204ENST00000422491 DCAF1Q9Y4B6 1507 aa17.51■□□□□ 0.39
USP54-204ENST00000422491 PELP1Q8IZL8 1130 aaKnown RBP17.34■□□□□ 0.37
USP54-204ENST00000422491 CCDC180Q9P1Z9 1646 aa17.31■□□□□ 0.36
USP54-204ENST00000422491 TRIM26Q12899 539 aaPredicted RBP17.24■□□□□ 0.35
USP54-204ENST00000422491 LOC105371045A0A1W2PR82 267 aa17.23■□□□□ 0.35
USP54-204ENST00000422491 ZEB1P37275 1124 aaPredicted RBP17.09■□□□□ 0.33
USP54-204ENST00000422491 SCAF1Q9H7N4 1312 aaKnown RBP17.07■□□□□ 0.32
USP54-204ENST00000422491 DCAF8L2P0C7V8 631 aa16.94■□□□□ 0.3
USP54-204ENST00000422491 ABCC9O60706 1549 aa16.74■□□□□ 0.27
USP54-204ENST00000422491 ACIN1Q9UKV3 1341 aaKnown RBP16.69■□□□□ 0.26
USP54-204ENST00000422491 MYT1Q01538 1121 aa16.65■□□□□ 0.26
USP54-204ENST00000422491 TRIM41Q8WV44 630 aa16.64■□□□□ 0.25
USP54-204ENST00000422491 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
USP54-204ENST00000422491 RSF1Q96T23 1441 aaPredicted RBP16.6■□□□□ 0.25
USP54-204ENST00000422491 FAM9AQ8IZU1 332 aaPredicted RBP16.54■□□□□ 0.24
USP54-204ENST00000422491 RB1CC1Q8TDY2 1594 aa16.53■□□□□ 0.24
USP54-204ENST00000422491 GTF3C3Q9Y5Q9 886 aa16.5■□□□□ 0.23
USP54-204ENST00000422491 CENPBP07199 599 aaPredicted RBP16.46■□□□□ 0.23
USP54-204ENST00000422491 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.45■□□□□ 0.22
USP54-204ENST00000422491 DIEXFQ68CQ4 756 aaKnown RBP16.43■□□□□ 0.22
USP54-204ENST00000422491 CCER1Q8TC90 406 aaPredicted RBP16.42■□□□□ 0.22
USP54-204ENST00000422491 EHMT2Q96KQ7 1210 aa16.39■□□□□ 0.21
USP54-204ENST00000422491 SCRIBQ14160 1630 aa16.35■□□□□ 0.21
USP54-204ENST00000422491 WRNQ14191 1432 aaPredicted RBP eCLIP16.2■□□□□ 0.18
USP54-204ENST00000422491 ZNF316A6NFI3 1004 aaPredicted RBP16.16■□□□□ 0.18
USP54-204ENST00000422491 EIF4G1Q04637 1599 aaKnown RBP16.14■□□□□ 0.17
USP54-204ENST00000422491 MROH2BQ7Z745 1585 aa16.13■□□□□ 0.17
USP54-204ENST00000422491 CECR2Q9BXF3 1484 aa16.13■□□□□ 0.17
USP54-204ENST00000422491 WIZO95785 1651 aa16.07■□□□□ 0.16
USP54-204ENST00000422491 YTHDC1Q96MU7 727 aaKnown RBP16.06■□□□□ 0.16
USP54-204ENST00000422491 CEP162Q5TB80 1403 aa16.05■□□□□ 0.16
USP54-204ENST00000422491 TTBK1Q5TCY1 1321 aaPredicted RBP16.02■□□□□ 0.15
USP54-204ENST00000422491 MIER1Q8N108 512 aa16.02■□□□□ 0.15
USP54-204ENST00000422491 BAZ1AQ9NRL2 1556 aaPredicted RBP16.02■□□□□ 0.15
USP54-204ENST00000422491 TNIKQ9UKE5 1360 aa15.98■□□□□ 0.15
USP54-204ENST00000422491 CCDC88BA6NC98 1476 aa15.95■□□□□ 0.14
USP54-204ENST00000422491 ABCC8Q09428 1581 aa15.92■□□□□ 0.14
USP54-204ENST00000422491 SOGA1O94964 1423 aa15.88■□□□□ 0.13
USP54-204ENST00000422491 NACADO15069 1562 aa15.87■□□□□ 0.13
USP54-204ENST00000422491 EEA1Q15075 1411 aa15.84■□□□□ 0.13
USP54-204ENST00000422491 CLSPNQ9HAW4 1339 aa15.82■□□□□ 0.12
USP54-204ENST00000422491 TOP2AP11388 1531 aaKnown RBP15.8■□□□□ 0.12
USP54-204ENST00000422491 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
USP54-204ENST00000422491 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
USP54-204ENST00000422491 GOLGA3Q08378 1498 aa15.78■□□□□ 0.12
USP54-204ENST00000422491 SUPT16HQ9Y5B9 1047 aaKnown RBP15.77■□□□□ 0.12
USP54-204ENST00000422491 UBTFP17480 764 aaKnown RBP15.76■□□□□ 0.11
USP54-204ENST00000422491 HNRNPUL2Q1KMD3 747 aaKnown RBP15.76■□□□□ 0.11
USP54-204ENST00000422491 SMARCA2P51531 1590 aa15.76■□□□□ 0.11
USP54-204ENST00000422491 TSHZ2Q9NRE2 1034 aa15.68■□□□□ 0.1
USP54-204ENST00000422491 ANP32EQ9BTT0 268 aa15.67■□□□□ 0.1
USP54-204ENST00000422491 SMARCA4P51532 1647 aa15.65■□□□□ 0.1
USP54-204ENST00000422491 VPS8Q8N3P4 1428 aa15.64■□□□□ 0.09
USP54-204ENST00000422491 KIF21BO75037 1637 aa15.63■□□□□ 0.09
USP54-204ENST00000422491 CEP164Q9UPV0 1460 aa15.63■□□□□ 0.09
USP54-204ENST00000422491 CLIP1P30622 1438 aa15.62■□□□□ 0.09
USP54-204ENST00000422491 DHX57Q6P158 1386 aaKnown RBP15.58■□□□□ 0.08
USP54-204ENST00000422491 BCL11AQ9H165 835 aa15.54■□□□□ 0.08
USP54-204ENST00000422491 BAZ1BQ9UIG0 1483 aaKnown RBP15.53■□□□□ 0.08
USP54-204ENST00000422491 APLP2Q06481 763 aa15.5■□□□□ 0.07
USP54-204ENST00000422491 SYNJ1O43426 1573 aa15.49■□□□□ 0.07
USP54-204ENST00000422491 RAPGEF2Q9Y4G8 1499 aa15.46■□□□□ 0.07
USP54-204ENST00000422491 CUX2O14529 1486 aa15.4■□□□□ 0.06
USP54-204ENST00000422491 KCNH8Q96L42 1107 aa15.4■□□□□ 0.06
USP54-204ENST00000422491 RRBP1Q9P2E9 1410 aaKnown RBP15.37■□□□□ 0.05
USP54-204ENST00000422491 BCANQ96GW7 911 aa15.35■□□□□ 0.05
USP54-204ENST00000422491 UNC13AQ9UPW8 1703 aa15.34■□□□□ 0.05
USP54-204ENST00000422491 ARAP1Q96P48 1450 aa15.34■□□□□ 0.05
USP54-204ENST00000422491 FKBP8Q14318 412 aa15.33■□□□□ 0.04
USP54-204ENST00000422491 PEG3Q9GZU2 1588 aa15.32■□□□□ 0.04
USP54-204ENST00000422491 KANK4Q5T7N3 995 aaPredicted RBP15.32■□□□□ 0.04
USP54-204ENST00000422491 RANGAP1P46060 587 aaPredicted RBP15.31■□□□□ 0.04
USP54-204ENST00000422491 RBM19Q9Y4C8 960 aaKnown RBP15.31■□□□□ 0.04
USP54-204ENST00000422491 ERICH3Q5RHP9 1530 aa15.28■□□□□ 0.04
USP54-204ENST00000422491 MAPKBP1O60336 1514 aa15.27■□□□□ 0.03
USP54-204ENST00000422491 CCNB3Q8WWL7 1395 aa15.25■□□□□ 0.03
USP54-204ENST00000422491 PRXQ9BXM0 1461 aa15.25■□□□□ 0.03
USP54-204ENST00000422491 TOP2BQ02880 1626 aa15.23■□□□□ 0.03
USP54-204ENST00000422491 RAB3GAP2Q9H2M9 1393 aa15.2■□□□□ 0.02
USP54-204ENST00000422491 NEFLP07196 543 aa15.19■□□□□ 0.02
USP54-204ENST00000422491 DDX10Q13206 875 aaKnown RBP15.19■□□□□ 0.02
USP54-204ENST00000422491 WDR97A6NE52 1622 aa15.18■□□□□ 0.02
USP54-204ENST00000422491 MSH5O43196 834 aa15.18■□□□□ 0.02
USP54-204ENST00000422491 PPP1R15AO75807 674 aaPredicted RBP15.18■□□□□ 0.02
USP54-204ENST00000422491 BIVM-ERCC5R4GMW8 1640 aa15.17■□□□□ 0.02
USP54-204ENST00000422491 CCER2I3L3R5 266 aa15.15■□□□□ 0.02
USP54-204ENST00000422491 ITGAEP38570 1179 aa15.14■□□□□ 0.01
USP54-204ENST00000422491 BICRAQ9NZM4 1560 aa15.12■□□□□ 0.01
USP54-204ENST00000422491 ARHGAP35Q9NRY4 1499 aa15.11■□□□□ 0.01
USP54-204ENST00000422491 ATAD2BQ9ULI0 1458 aa15.11■□□□□ 0.01
USP54-204ENST00000422491 TRIM52Q96A61 297 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms