RNA–Protein interactions for RNA: ENST00000418188.1

CSPG4P3Y-201, Transcript of CSPG4 pseudogene 3 Y-linked, humanhuman

BASIC

Gene CSPG4P3Y, Length 3,724 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P3Y-201ENST00000418188 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
CSPG4P3Y-201ENST00000418188 SHROOM4Q9ULL8 1493 aa20.52■□□□□ 0.87
CSPG4P3Y-201ENST00000418188 SUPT5HO00267 1087 aaKnown RBP20.22■□□□□ 0.83
CSPG4P3Y-201ENST00000418188 DCAF8L2P0C7V8 631 aa20.16■□□□□ 0.82
CSPG4P3Y-201ENST00000418188 CCDC180Q9P1Z9 1646 aa20.15■□□□□ 0.82
CSPG4P3Y-201ENST00000418188 ZCCHC6Q5VYS8 1495 aaKnown RBP20.1■□□□□ 0.81
CSPG4P3Y-201ENST00000418188 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
CSPG4P3Y-201ENST00000418188 DCAF1Q9Y4B6 1507 aa19.48■□□□□ 0.71
CSPG4P3Y-201ENST00000418188 MYO15BQ96JP2 1530 aa19.24■□□□□ 0.67
CSPG4P3Y-201ENST00000418188 PCGF6Q9BYE7 350 aa19.05■□□□□ 0.64
CSPG4P3Y-201ENST00000418188 SCRIBQ14160 1630 aa19■□□□□ 0.63
CSPG4P3Y-201ENST00000418188 LOC105371045A0A1W2PR82 267 aa18.97■□□□□ 0.63
CSPG4P3Y-201ENST00000418188 HRCP23327 699 aa18.97■□□□□ 0.63
CSPG4P3Y-201ENST00000418188 ABCC9O60706 1549 aa18.94■□□□□ 0.62
CSPG4P3Y-201ENST00000418188 RSF1Q96T23 1441 aaPredicted RBP18.88■□□□□ 0.61
CSPG4P3Y-201ENST00000418188 TRIM41Q8WV44 630 aa18.85■□□□□ 0.61
CSPG4P3Y-201ENST00000418188 NACADO15069 1562 aa18.74■□□□□ 0.59
CSPG4P3Y-201ENST00000418188 FAM9AQ8IZU1 332 aaPredicted RBP18.71■□□□□ 0.59
CSPG4P3Y-201ENST00000418188 TRIM26Q12899 539 aaPredicted RBP18.67■□□□□ 0.58
CSPG4P3Y-201ENST00000418188 RB1CC1Q8TDY2 1594 aa18.65■□□□□ 0.58
CSPG4P3Y-201ENST00000418188 EHMT2Q96KQ7 1210 aa18.58■□□□□ 0.57
CSPG4P3Y-201ENST00000418188 CECR2Q9BXF3 1484 aa18.57■□□□□ 0.56
CSPG4P3Y-201ENST00000418188 PPARGC1BQ86YN6 1023 aaKnown RBP18.53■□□□□ 0.56
CSPG4P3Y-201ENST00000418188 MROH2BQ7Z745 1585 aa18.49■□□□□ 0.55
CSPG4P3Y-201ENST00000418188 ZEB1P37275 1124 aaPredicted RBP18.36■□□□□ 0.53
CSPG4P3Y-201ENST00000418188 WIZO95785 1651 aa18.36■□□□□ 0.53
CSPG4P3Y-201ENST00000418188 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
CSPG4P3Y-201ENST00000418188 PABPN1Q86U42 306 aaKnown RBP eCLIP18.13■□□□□ 0.49
CSPG4P3Y-201ENST00000418188 TOP2AP11388 1531 aaKnown RBP18.12■□□□□ 0.49
CSPG4P3Y-201ENST00000418188 SMARCA4P51532 1647 aa18.1■□□□□ 0.49
CSPG4P3Y-201ENST00000418188 CCDC88BA6NC98 1476 aa18.08■□□□□ 0.48
CSPG4P3Y-201ENST00000418188 UBTFP17480 764 aaKnown RBP18.02■□□□□ 0.48
CSPG4P3Y-201ENST00000418188 ABCC8Q09428 1581 aa18.01■□□□□ 0.47
CSPG4P3Y-201ENST00000418188 CCER1Q8TC90 406 aaPredicted RBP17.99■□□□□ 0.47
CSPG4P3Y-201ENST00000418188 TTBK1Q5TCY1 1321 aaPredicted RBP17.99■□□□□ 0.47
CSPG4P3Y-201ENST00000418188 SMARCA2P51531 1590 aa17.98■□□□□ 0.47
CSPG4P3Y-201ENST00000418188 EIF4G1Q04637 1599 aaKnown RBP17.96■□□□□ 0.47
CSPG4P3Y-201ENST00000418188 CSRNP3Q8WYN3 585 aa17.96■□□□□ 0.47
CSPG4P3Y-201ENST00000418188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
CSPG4P3Y-201ENST00000418188 UNC13AQ9UPW8 1703 aa17.91■□□□□ 0.46
CSPG4P3Y-201ENST00000418188 EEA1Q15075 1411 aa17.9■□□□□ 0.46
CSPG4P3Y-201ENST00000418188 SOGA1O94964 1423 aa17.9■□□□□ 0.46
CSPG4P3Y-201ENST00000418188 CEP162Q5TB80 1403 aa17.88■□□□□ 0.45
CSPG4P3Y-201ENST00000418188 TNIKQ9UKE5 1360 aa17.85■□□□□ 0.45
CSPG4P3Y-201ENST00000418188 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.44
CSPG4P3Y-201ENST00000418188 BICRAQ9NZM4 1560 aa17.78■□□□□ 0.44
CSPG4P3Y-201ENST00000418188 GOLGA3Q08378 1498 aa17.76■□□□□ 0.43
CSPG4P3Y-201ENST00000418188 RUSC2Q8N2Y8 1516 aa17.74■□□□□ 0.43
CSPG4P3Y-201ENST00000418188 APLP2Q06481 763 aa17.74■□□□□ 0.43
CSPG4P3Y-201ENST00000418188 BAZ1BQ9UIG0 1483 aaKnown RBP17.73■□□□□ 0.43
CSPG4P3Y-201ENST00000418188 ATAD2BQ9ULI0 1458 aa17.7■□□□□ 0.42
CSPG4P3Y-201ENST00000418188 PEG3Q9GZU2 1588 aa17.68■□□□□ 0.42
CSPG4P3Y-201ENST00000418188 RANGAP1P46060 587 aaPredicted RBP17.67■□□□□ 0.42
CSPG4P3Y-201ENST00000418188 CEP164Q9UPV0 1460 aa17.66■□□□□ 0.42
CSPG4P3Y-201ENST00000418188 CLIP1P30622 1438 aa17.6■□□□□ 0.41
CSPG4P3Y-201ENST00000418188 HNRNPUL2Q1KMD3 747 aaKnown RBP17.57■□□□□ 0.4
CSPG4P3Y-201ENST00000418188 SYNJ1O43426 1573 aa17.57■□□□□ 0.4
CSPG4P3Y-201ENST00000418188 DIEXFQ68CQ4 756 aaKnown RBP17.57■□□□□ 0.4
CSPG4P3Y-201ENST00000418188 KIF21BO75037 1637 aa17.49■□□□□ 0.39
CSPG4P3Y-201ENST00000418188 VPS8Q8N3P4 1428 aa17.47■□□□□ 0.39
CSPG4P3Y-201ENST00000418188 CENPBP07199 599 aaPredicted RBP17.46■□□□□ 0.39
CSPG4P3Y-201ENST00000418188 RAPGEF2Q9Y4G8 1499 aa17.46■□□□□ 0.39
CSPG4P3Y-201ENST00000418188 SCAF1Q9H7N4 1312 aaKnown RBP17.42■□□□□ 0.38
CSPG4P3Y-201ENST00000418188 ZNF316A6NFI3 1004 aaPredicted RBP17.41■□□□□ 0.38
CSPG4P3Y-201ENST00000418188 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
CSPG4P3Y-201ENST00000418188 ACIN1Q9UKV3 1341 aaKnown RBP17.36■□□□□ 0.37
CSPG4P3Y-201ENST00000418188 NCAPD3P42695 1498 aa17.35■□□□□ 0.37
CSPG4P3Y-201ENST00000418188 KIF27Q86VH2 1401 aa17.33■□□□□ 0.36
CSPG4P3Y-201ENST00000418188 HMGXB3Q12766 1538 aa17.3■□□□□ 0.36
CSPG4P3Y-201ENST00000418188 PELP1Q8IZL8 1130 aaKnown RBP17.3■□□□□ 0.36
CSPG4P3Y-201ENST00000418188 NEUROD1Q13562 356 aa17.29■□□□□ 0.36
CSPG4P3Y-201ENST00000418188 ERICH3Q5RHP9 1530 aa17.25■□□□□ 0.35
CSPG4P3Y-201ENST00000418188 PRXQ9BXM0 1461 aa17.25■□□□□ 0.35
CSPG4P3Y-201ENST00000418188 BIVM-ERCC5R4GMW8 1640 aa17.25■□□□□ 0.35
CSPG4P3Y-201ENST00000418188 YTHDC1Q96MU7 727 aaKnown RBP17.22■□□□□ 0.35
CSPG4P3Y-201ENST00000418188 CFTRP13569 1480 aa17.21■□□□□ 0.35
CSPG4P3Y-201ENST00000418188 CUX1P39880 1505 aa17.21■□□□□ 0.35
CSPG4P3Y-201ENST00000418188 GTF3C3Q9Y5Q9 886 aa17.2■□□□□ 0.34
CSPG4P3Y-201ENST00000418188 KANK4Q5T7N3 995 aaPredicted RBP17.18■□□□□ 0.34
CSPG4P3Y-201ENST00000418188 ITGAEP38570 1179 aa17.17■□□□□ 0.34
CSPG4P3Y-201ENST00000418188 ARAP1Q96P48 1450 aa17.15■□□□□ 0.34
CSPG4P3Y-201ENST00000418188 CLSPNQ9HAW4 1339 aa17.13■□□□□ 0.33
CSPG4P3Y-201ENST00000418188 CUX2O14529 1486 aa17.13■□□□□ 0.33
CSPG4P3Y-201ENST00000418188 CADPSQ9ULU8 1353 aa17.11■□□□□ 0.33
CSPG4P3Y-201ENST00000418188 MIER1Q8N108 512 aa17.1■□□□□ 0.33
CSPG4P3Y-201ENST00000418188 ATP1B4Q9UN42 357 aaPredicted RBP17.1■□□□□ 0.33
CSPG4P3Y-201ENST00000418188 CARMIL1Q5VZK9 1371 aa17.06■□□□□ 0.32
CSPG4P3Y-201ENST00000418188 CCNB3Q8WWL7 1395 aa17.06■□□□□ 0.32
CSPG4P3Y-201ENST00000418188 IGF1RP08069 1367 aa17.05■□□□□ 0.32
CSPG4P3Y-201ENST00000418188 DHX57Q6P158 1386 aaKnown RBP17.04■□□□□ 0.32
CSPG4P3Y-201ENST00000418188 ARHGAP35Q9NRY4 1499 aa17.04■□□□□ 0.32
CSPG4P3Y-201ENST00000418188 RRBP1Q9P2E9 1410 aaKnown RBP17■□□□□ 0.31
CSPG4P3Y-201ENST00000418188 P3H3Q8IVL6 736 aa17■□□□□ 0.31
CSPG4P3Y-201ENST00000418188 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
CSPG4P3Y-201ENST00000418188 FAM50AQ14320 339 aaKnown RBP16.98■□□□□ 0.31
CSPG4P3Y-201ENST00000418188 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
CSPG4P3Y-201ENST00000418188 FANCD2Q9BXW9 1451 aa16.92■□□□□ 0.3
CSPG4P3Y-201ENST00000418188 PRDM2Q13029 1718 aa16.87■□□□□ 0.29
CSPG4P3Y-201ENST00000418188 RAB3GAP2Q9H2M9 1393 aa16.87■□□□□ 0.29
CSPG4P3Y-201ENST00000418188 CC2D2AQ9P2K1 1620 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms