RNA–Protein interactions for RNA: ENST00000409938.5

EPHA4-203, Transcript of EPH receptor A4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene EPHA4, Length 3,363 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-203ENST00000409938 NISCHQ9Y2I1 1504 aa16.32■□□□□ 0.2
EPHA4-203ENST00000409938 CCDC180Q9P1Z9 1646 aa13.95□□□□□ -0.18
EPHA4-203ENST00000409938 ZCCHC6Q5VYS8 1495 aaKnown RBP13.87□□□□□ -0.19
EPHA4-203ENST00000409938 SHROOM4Q9ULL8 1493 aa13.69□□□□□ -0.22
EPHA4-203ENST00000409938 DCAF1Q9Y4B6 1507 aa13.52□□□□□ -0.25
EPHA4-203ENST00000409938 SUPT5HO00267 1087 aaKnown RBP13.43□□□□□ -0.26
EPHA4-203ENST00000409938 MYO15BQ96JP2 1530 aa13.35□□□□□ -0.27
EPHA4-203ENST00000409938 CHIC1Q5VXU3 224 aa13.29□□□□□ -0.28
EPHA4-203ENST00000409938 ABCC9O60706 1549 aa13.13□□□□□ -0.31
EPHA4-203ENST00000409938 HRCP23327 699 aa13.06□□□□□ -0.32
EPHA4-203ENST00000409938 DCAF8L2P0C7V8 631 aa13.05□□□□□ -0.32
EPHA4-203ENST00000409938 RSF1Q96T23 1441 aaPredicted RBP12.91□□□□□ -0.34
EPHA4-203ENST00000409938 SCRIBQ14160 1630 aa12.9□□□□□ -0.34
EPHA4-203ENST00000409938 RB1CC1Q8TDY2 1594 aa12.85□□□□□ -0.35
EPHA4-203ENST00000409938 PCGF6Q9BYE7 350 aa12.84□□□□□ -0.35
EPHA4-203ENST00000409938 LOC105371045A0A1W2PR82 267 aa12.8□□□□□ -0.36
EPHA4-203ENST00000409938 NACADO15069 1562 aa12.79□□□□□ -0.36
EPHA4-203ENST00000409938 TRIM26Q12899 539 aaPredicted RBP12.68□□□□□ -0.38
EPHA4-203ENST00000409938 MROH2BQ7Z745 1585 aa12.66□□□□□ -0.38
EPHA4-203ENST00000409938 PPARGC1BQ86YN6 1023 aaKnown RBP12.66□□□□□ -0.38
EPHA4-203ENST00000409938 EIF4G1Q04637 1599 aaKnown RBP12.65□□□□□ -0.38
EPHA4-203ENST00000409938 CECR2Q9BXF3 1484 aa12.65□□□□□ -0.38
EPHA4-203ENST00000409938 WIZO95785 1651 aa12.61□□□□□ -0.39
EPHA4-203ENST00000409938 BAZ1AQ9NRL2 1556 aaPredicted RBP12.61□□□□□ -0.39
EPHA4-203ENST00000409938 TRIM41Q8WV44 630 aa12.56□□□□□ -0.4
EPHA4-203ENST00000409938 ZEB1P37275 1124 aaPredicted RBP12.46□□□□□ -0.42
EPHA4-203ENST00000409938 TOP2AP11388 1531 aaKnown RBP12.45□□□□□ -0.42
EPHA4-203ENST00000409938 UNC13AQ9UPW8 1703 aa12.45□□□□□ -0.42
EPHA4-203ENST00000409938 SMARCA4P51532 1647 aa12.43□□□□□ -0.42
EPHA4-203ENST00000409938 SMARCA2P51531 1590 aa12.39□□□□□ -0.43
EPHA4-203ENST00000409938 FAM9AQ8IZU1 332 aaPredicted RBP12.35□□□□□ -0.43
EPHA4-203ENST00000409938 CCDC88BA6NC98 1476 aa12.34□□□□□ -0.43
EPHA4-203ENST00000409938 WRNQ14191 1432 aaPredicted RBP eCLIP12.32□□□□□ -0.44
EPHA4-203ENST00000409938 ABCC8Q09428 1581 aa12.3□□□□□ -0.44
EPHA4-203ENST00000409938 PEG3Q9GZU2 1588 aa12.28□□□□□ -0.44
EPHA4-203ENST00000409938 BICRAQ9NZM4 1560 aa12.25□□□□□ -0.45
EPHA4-203ENST00000409938 EEA1Q15075 1411 aa12.23□□□□□ -0.45
EPHA4-203ENST00000409938 TNIKQ9UKE5 1360 aa12.2□□□□□ -0.46
EPHA4-203ENST00000409938 CEP162Q5TB80 1403 aa12.19□□□□□ -0.46
EPHA4-203ENST00000409938 SOGA1O94964 1423 aa12.19□□□□□ -0.46
EPHA4-203ENST00000409938 EHMT2Q96KQ7 1210 aa12.15□□□□□ -0.47
EPHA4-203ENST00000409938 RUSC2Q8N2Y8 1516 aa12.14□□□□□ -0.47
EPHA4-203ENST00000409938 KIF21BO75037 1637 aa12.12□□□□□ -0.47
EPHA4-203ENST00000409938 GOLGA3Q08378 1498 aa12.1□□□□□ -0.47
EPHA4-203ENST00000409938 SYNJ1O43426 1573 aa12.1□□□□□ -0.47
EPHA4-203ENST00000409938 SCAF1Q9H7N4 1312 aaKnown RBP12.07□□□□□ -0.48
EPHA4-203ENST00000409938 CSRNP3Q8WYN3 585 aa12.07□□□□□ -0.48
EPHA4-203ENST00000409938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.06□□□□□ -0.48
EPHA4-203ENST00000409938 ATAD2BQ9ULI0 1458 aa12.03□□□□□ -0.48
EPHA4-203ENST00000409938 CEP164Q9UPV0 1460 aa12.03□□□□□ -0.48
EPHA4-203ENST00000409938 BAZ1BQ9UIG0 1483 aaKnown RBP12.01□□□□□ -0.49
EPHA4-203ENST00000409938 CCER1Q8TC90 406 aaPredicted RBP12.01□□□□□ -0.49
EPHA4-203ENST00000409938 BIVM-ERCC5R4GMW8 1640 aa11.98□□□□□ -0.49
EPHA4-203ENST00000409938 TOP2BQ02880 1626 aa11.98□□□□□ -0.49
EPHA4-203ENST00000409938 PELP1Q8IZL8 1130 aaKnown RBP11.95□□□□□ -0.5
EPHA4-203ENST00000409938 VPS8Q8N3P4 1428 aa11.94□□□□□ -0.5
EPHA4-203ENST00000409938 PABPN1Q86U42 306 aaKnown RBP eCLIP11.92□□□□□ -0.5
EPHA4-203ENST00000409938 ACIN1Q9UKV3 1341 aaKnown RBP11.92□□□□□ -0.5
EPHA4-203ENST00000409938 CLIP1P30622 1438 aa11.91□□□□□ -0.5
EPHA4-203ENST00000409938 RAPGEF2Q9Y4G8 1499 aa11.91□□□□□ -0.5
EPHA4-203ENST00000409938 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.5
EPHA4-203ENST00000409938 UBTFP17480 764 aaKnown RBP11.9□□□□□ -0.51
EPHA4-203ENST00000409938 DIEXFQ68CQ4 756 aaKnown RBP11.89□□□□□ -0.51
EPHA4-203ENST00000409938 HMGXB3Q12766 1538 aa11.87□□□□□ -0.51
EPHA4-203ENST00000409938 NEUROD1Q13562 356 aa11.87□□□□□ -0.51
EPHA4-203ENST00000409938 PRXQ9BXM0 1461 aa11.86□□□□□ -0.51
EPHA4-203ENST00000409938 ZNF316A6NFI3 1004 aaPredicted RBP11.82□□□□□ -0.52
EPHA4-203ENST00000409938 ARAP1Q96P48 1450 aa11.81□□□□□ -0.52
EPHA4-203ENST00000409938 NCAPD3P42695 1498 aa11.81□□□□□ -0.52
EPHA4-203ENST00000409938 TTBK1Q5TCY1 1321 aaPredicted RBP11.81□□□□□ -0.52
EPHA4-203ENST00000409938 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
EPHA4-203ENST00000409938 CUX1P39880 1505 aa11.8□□□□□ -0.52
EPHA4-203ENST00000409938 CENPBP07199 599 aaPredicted RBP11.75□□□□□ -0.53
EPHA4-203ENST00000409938 CUX2O14529 1486 aa11.75□□□□□ -0.53
EPHA4-203ENST00000409938 CFTRP13569 1480 aa11.74□□□□□ -0.53
EPHA4-203ENST00000409938 CLSPNQ9HAW4 1339 aa11.73□□□□□ -0.53
EPHA4-203ENST00000409938 RRBP1Q9P2E9 1410 aaKnown RBP11.73□□□□□ -0.53
EPHA4-203ENST00000409938 GTF3C3Q9Y5Q9 886 aa11.71□□□□□ -0.53
EPHA4-203ENST00000409938 DHX57Q6P158 1386 aaKnown RBP11.69□□□□□ -0.54
EPHA4-203ENST00000409938 HNRNPUL2Q1KMD3 747 aaKnown RBP11.69□□□□□ -0.54
EPHA4-203ENST00000409938 KIF27Q86VH2 1401 aa11.68□□□□□ -0.54
EPHA4-203ENST00000409938 ARHGAP35Q9NRY4 1499 aa11.67□□□□□ -0.54
EPHA4-203ENST00000409938 MAP3K1Q13233 1512 aa11.66□□□□□ -0.54
EPHA4-203ENST00000409938 MIER1Q8N108 512 aa11.64□□□□□ -0.55
EPHA4-203ENST00000409938 APLP2Q06481 763 aa11.62□□□□□ -0.55
EPHA4-203ENST00000409938 KANK4Q5T7N3 995 aaPredicted RBP11.62□□□□□ -0.55
EPHA4-203ENST00000409938 TIAM1Q13009 1591 aa11.59□□□□□ -0.55
EPHA4-203ENST00000409938 CFAP43Q8NDM7 1665 aa11.57□□□□□ -0.56
EPHA4-203ENST00000409938 IGF1RP08069 1367 aa11.57□□□□□ -0.56
EPHA4-203ENST00000409938 CCNB3Q8WWL7 1395 aa11.56□□□□□ -0.56
EPHA4-203ENST00000409938 MAPKBP1O60336 1514 aa11.55□□□□□ -0.56
EPHA4-203ENST00000409938 CADPSQ9ULU8 1353 aa11.51□□□□□ -0.57
EPHA4-203ENST00000409938 FGD5Q6ZNL6 1462 aa11.51□□□□□ -0.57
EPHA4-203ENST00000409938 LRRC9Q6ZRR7 1453 aa11.51□□□□□ -0.57
EPHA4-203ENST00000409938 RANGAP1P46060 587 aaPredicted RBP11.51□□□□□ -0.57
EPHA4-203ENST00000409938 PCF11O94913 1555 aaKnown RBP11.48□□□□□ -0.57
EPHA4-203ENST00000409938 YTHDC1Q96MU7 727 aaKnown RBP11.48□□□□□ -0.57
EPHA4-203ENST00000409938 CARMIL1Q5VZK9 1371 aa11.47□□□□□ -0.57
EPHA4-203ENST00000409938 RAB3GAP2Q9H2M9 1393 aa11.46□□□□□ -0.57
EPHA4-203ENST00000409938 CC2D2AQ9P2K1 1620 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms