RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 NISCHQ9Y2I1 1504 aa22.14■■□□□ 1.14
CLIP4-204ENST00000404424 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
CLIP4-204ENST00000404424 ZCCHC6Q5VYS8 1495 aaKnown RBP18.76■□□□□ 0.59
CLIP4-204ENST00000404424 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
CLIP4-204ENST00000404424 SUPT5HO00267 1087 aaKnown RBP18.44■□□□□ 0.54
CLIP4-204ENST00000404424 DCAF1Q9Y4B6 1507 aa18.27■□□□□ 0.52
CLIP4-204ENST00000404424 DCAF8L2P0C7V8 631 aa18.16■□□□□ 0.5
CLIP4-204ENST00000404424 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
CLIP4-204ENST00000404424 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
CLIP4-204ENST00000404424 ABCC9O60706 1549 aa17.7■□□□□ 0.42
CLIP4-204ENST00000404424 HRCP23327 699 aa17.63■□□□□ 0.41
CLIP4-204ENST00000404424 SCRIBQ14160 1630 aa17.54■□□□□ 0.4
CLIP4-204ENST00000404424 RSF1Q96T23 1441 aaPredicted RBP17.52■□□□□ 0.4
CLIP4-204ENST00000404424 PCGF6Q9BYE7 350 aa17.5■□□□□ 0.39
CLIP4-204ENST00000404424 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
CLIP4-204ENST00000404424 NACADO15069 1562 aa17.41■□□□□ 0.38
CLIP4-204ENST00000404424 RB1CC1Q8TDY2 1594 aa17.39■□□□□ 0.37
CLIP4-204ENST00000404424 TRIM26Q12899 539 aaPredicted RBP17.26■□□□□ 0.35
CLIP4-204ENST00000404424 TRIM41Q8WV44 630 aa17.26■□□□□ 0.35
CLIP4-204ENST00000404424 CECR2Q9BXF3 1484 aa17.18■□□□□ 0.34
CLIP4-204ENST00000404424 MROH2BQ7Z745 1585 aa17.16■□□□□ 0.34
CLIP4-204ENST00000404424 PPARGC1BQ86YN6 1023 aaKnown RBP17.1■□□□□ 0.33
CLIP4-204ENST00000404424 WIZO95785 1651 aa17.06■□□□□ 0.32
CLIP4-204ENST00000404424 BAZ1AQ9NRL2 1556 aaPredicted RBP17.04■□□□□ 0.32
CLIP4-204ENST00000404424 FAM9AQ8IZU1 332 aaPredicted RBP17■□□□□ 0.31
CLIP4-204ENST00000404424 ZEB1P37275 1124 aaPredicted RBP16.99■□□□□ 0.31
CLIP4-204ENST00000404424 EIF4G1Q04637 1599 aaKnown RBP16.91■□□□□ 0.3
CLIP4-204ENST00000404424 TOP2AP11388 1531 aaKnown RBP16.87■□□□□ 0.29
CLIP4-204ENST00000404424 SMARCA4P51532 1647 aa16.83■□□□□ 0.29
CLIP4-204ENST00000404424 EHMT2Q96KQ7 1210 aa16.76■□□□□ 0.27
CLIP4-204ENST00000404424 UNC13AQ9UPW8 1703 aa16.76■□□□□ 0.27
CLIP4-204ENST00000404424 CCDC88BA6NC98 1476 aa16.76■□□□□ 0.27
CLIP4-204ENST00000404424 SMARCA2P51531 1590 aa16.75■□□□□ 0.27
CLIP4-204ENST00000404424 ABCC8Q09428 1581 aa16.67■□□□□ 0.26
CLIP4-204ENST00000404424 EEA1Q15075 1411 aa16.64■□□□□ 0.25
CLIP4-204ENST00000404424 WRNQ14191 1432 aaPredicted RBP eCLIP16.63■□□□□ 0.25
CLIP4-204ENST00000404424 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.24
CLIP4-204ENST00000404424 TNIKQ9UKE5 1360 aa16.58■□□□□ 0.24
CLIP4-204ENST00000404424 BICRAQ9NZM4 1560 aa16.56■□□□□ 0.24
CLIP4-204ENST00000404424 SOGA1O94964 1423 aa16.55■□□□□ 0.24
CLIP4-204ENST00000404424 CEP162Q5TB80 1403 aa16.55■□□□□ 0.24
CLIP4-204ENST00000404424 CSRNP3Q8WYN3 585 aa16.52■□□□□ 0.24
CLIP4-204ENST00000404424 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLIP4-204ENST00000404424 CCER1Q8TC90 406 aaPredicted RBP16.46■□□□□ 0.23
CLIP4-204ENST00000404424 GOLGA3Q08378 1498 aa16.45■□□□□ 0.22
CLIP4-204ENST00000404424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
CLIP4-204ENST00000404424 RUSC2Q8N2Y8 1516 aa16.43■□□□□ 0.22
CLIP4-204ENST00000404424 UBTFP17480 764 aaKnown RBP16.41■□□□□ 0.22
CLIP4-204ENST00000404424 ATAD2BQ9ULI0 1458 aa16.39■□□□□ 0.21
CLIP4-204ENST00000404424 CEP164Q9UPV0 1460 aa16.37■□□□□ 0.21
CLIP4-204ENST00000404424 KIF21BO75037 1637 aa16.36■□□□□ 0.21
CLIP4-204ENST00000404424 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
CLIP4-204ENST00000404424 BAZ1BQ9UIG0 1483 aaKnown RBP16.34■□□□□ 0.21
CLIP4-204ENST00000404424 TTBK1Q5TCY1 1321 aaPredicted RBP16.26■□□□□ 0.19
CLIP4-204ENST00000404424 CLIP1P30622 1438 aa16.24■□□□□ 0.19
CLIP4-204ENST00000404424 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
CLIP4-204ENST00000404424 VPS8Q8N3P4 1428 aa16.21■□□□□ 0.18
CLIP4-204ENST00000404424 TOP2BQ02880 1626 aa16.2■□□□□ 0.18
CLIP4-204ENST00000404424 DIEXFQ68CQ4 756 aaKnown RBP16.2■□□□□ 0.18
CLIP4-204ENST00000404424 RAPGEF2Q9Y4G8 1499 aa16.16■□□□□ 0.18
CLIP4-204ENST00000404424 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
CLIP4-204ENST00000404424 BIVM-ERCC5R4GMW8 1640 aa16.15■□□□□ 0.18
CLIP4-204ENST00000404424 ACIN1Q9UKV3 1341 aaKnown RBP16.12■□□□□ 0.17
CLIP4-204ENST00000404424 APLP2Q06481 763 aa16.12■□□□□ 0.17
CLIP4-204ENST00000404424 HMGXB3Q12766 1538 aa16.11■□□□□ 0.17
CLIP4-204ENST00000404424 ERICH3Q5RHP9 1530 aa16.1■□□□□ 0.17
CLIP4-204ENST00000404424 ZNF316A6NFI3 1004 aaPredicted RBP16.09■□□□□ 0.17
CLIP4-204ENST00000404424 NCAPD3P42695 1498 aa16.09■□□□□ 0.17
CLIP4-204ENST00000404424 CENPBP07199 599 aaPredicted RBP16.07■□□□□ 0.16
CLIP4-204ENST00000404424 PRXQ9BXM0 1461 aa16.06■□□□□ 0.16
CLIP4-204ENST00000404424 HNRNPUL2Q1KMD3 747 aaKnown RBP16.04■□□□□ 0.16
CLIP4-204ENST00000404424 NEUROD1Q13562 356 aa16.03■□□□□ 0.16
CLIP4-204ENST00000404424 CUX1P39880 1505 aa15.98■□□□□ 0.15
CLIP4-204ENST00000404424 KIF27Q86VH2 1401 aa15.98■□□□□ 0.15
CLIP4-204ENST00000404424 CFTRP13569 1480 aa15.97■□□□□ 0.15
CLIP4-204ENST00000404424 ARAP1Q96P48 1450 aa15.96■□□□□ 0.14
CLIP4-204ENST00000404424 CLSPNQ9HAW4 1339 aa15.95■□□□□ 0.14
CLIP4-204ENST00000404424 RANGAP1P46060 587 aaPredicted RBP15.93■□□□□ 0.14
CLIP4-204ENST00000404424 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
CLIP4-204ENST00000404424 PRDM2Q13029 1718 aa15.87■□□□□ 0.13
CLIP4-204ENST00000404424 RRBP1Q9P2E9 1410 aaKnown RBP15.86■□□□□ 0.13
CLIP4-204ENST00000404424 DHX57Q6P158 1386 aaKnown RBP15.83■□□□□ 0.12
CLIP4-204ENST00000404424 KANK4Q5T7N3 995 aaPredicted RBP15.83■□□□□ 0.12
CLIP4-204ENST00000404424 ARHGAP35Q9NRY4 1499 aa15.82■□□□□ 0.12
CLIP4-204ENST00000404424 CUX2O14529 1486 aa15.79■□□□□ 0.12
CLIP4-204ENST00000404424 MIER1Q8N108 512 aa15.79■□□□□ 0.12
CLIP4-204ENST00000404424 IGF1RP08069 1367 aa15.77■□□□□ 0.11
CLIP4-204ENST00000404424 CADPSQ9ULU8 1353 aa15.77■□□□□ 0.11
CLIP4-204ENST00000404424 CCNB3Q8WWL7 1395 aa15.76■□□□□ 0.11
CLIP4-204ENST00000404424 MAP3K1Q13233 1512 aa15.75■□□□□ 0.11
CLIP4-204ENST00000404424 CARMIL1Q5VZK9 1371 aa15.71■□□□□ 0.1
CLIP4-204ENST00000404424 YTHDC1Q96MU7 727 aaKnown RBP15.7■□□□□ 0.1
CLIP4-204ENST00000404424 FGD5Q6ZNL6 1462 aa15.69■□□□□ 0.1
CLIP4-204ENST00000404424 TIAM1Q13009 1591 aa15.68■□□□□ 0.1
CLIP4-204ENST00000404424 FHAD1B1AJZ9 1412 aa15.64■□□□□ 0.09
CLIP4-204ENST00000404424 LRRC9Q6ZRR7 1453 aa15.62■□□□□ 0.09
CLIP4-204ENST00000404424 FANCD2Q9BXW9 1451 aa15.59■□□□□ 0.09
CLIP4-204ENST00000404424 RAB3GAP2Q9H2M9 1393 aa15.59■□□□□ 0.09
CLIP4-204ENST00000404424 CC2D2AQ9P2K1 1620 aa15.57■□□□□ 0.08
CLIP4-204ENST00000404424 CFAP43Q8NDM7 1665 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms