RNA–Protein interactions for RNA: ENST00000402555.2

HMGB1P20-201, Transcript of high mobility group box 1 pseudogene 20, humanhuman

BASIC

Gene HMGB1P20, Length 677 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P20-201ENST00000402555 AEBP2Q6ZN18 517 aaPredicted RBP17.34■□□□□ 0.37
HMGB1P20-201ENST00000402555 CHIC1Q5VXU3 224 aa16.53■□□□□ 0.24
HMGB1P20-201ENST00000402555 SENP3Q9H4L4 574 aaPredicted RBP14.77□□□□□ -0.05
HMGB1P20-201ENST00000402555 PHF23Q9BUL5 403 aaPredicted RBP14.58□□□□□ -0.08
HMGB1P20-201ENST00000402555 NISCHQ9Y2I1 1504 aa14.17□□□□□ -0.14
HMGB1P20-201ENST00000402555 FOXD1Q16676 465 aa13.76□□□□□ -0.21
HMGB1P20-201ENST00000402555 PLPPR3Q6T4P5 718 aa13.22□□□□□ -0.29
HMGB1P20-201ENST00000402555 PPP6R1Q9UPN7 881 aa12.92□□□□□ -0.34
HMGB1P20-201ENST00000402555 MSH5O43196 834 aa12.85□□□□□ -0.35
HMGB1P20-201ENST00000402555 ADRA2BP18089 450 aa12.85□□□□□ -0.35
HMGB1P20-201ENST00000402555 PIAS4Q8N2W9 510 aaPredicted RBP12.84□□□□□ -0.35
HMGB1P20-201ENST00000402555 CCDC180Q9P1Z9 1646 aa12.62□□□□□ -0.39
HMGB1P20-201ENST00000402555 ABCC9O60706 1549 aa12.52□□□□□ -0.41
HMGB1P20-201ENST00000402555 POTEDQ86YR6 584 aa12.43□□□□□ -0.42
HMGB1P20-201ENST00000402555 RB1CC1Q8TDY2 1594 aa11.94□□□□□ -0.5
HMGB1P20-201ENST00000402555 DCAF8L2P0C7V8 631 aa11.94□□□□□ -0.5
HMGB1P20-201ENST00000402555 NACADO15069 1562 aa11.88□□□□□ -0.51
HMGB1P20-201ENST00000402555 MAPK8IP2Q13387 824 aaPredicted RBP11.79□□□□□ -0.52
HMGB1P20-201ENST00000402555 ZCCHC6Q5VYS8 1495 aaKnown RBP11.78□□□□□ -0.52
HMGB1P20-201ENST00000402555 SCAF1Q9H7N4 1312 aaKnown RBP11.76□□□□□ -0.53
HMGB1P20-201ENST00000402555 MYO15BQ96JP2 1530 aa11.76□□□□□ -0.53
HMGB1P20-201ENST00000402555 DMRT2Q9Y5R5 561 aa11.73□□□□□ -0.53
HMGB1P20-201ENST00000402555 UNC13AQ9UPW8 1703 aa11.7□□□□□ -0.54
HMGB1P20-201ENST00000402555 PABPN1Q86U42 306 aaKnown RBP eCLIP11.69□□□□□ -0.54
HMGB1P20-201ENST00000402555 DCAF1Q9Y4B6 1507 aa11.68□□□□□ -0.54
HMGB1P20-201ENST00000402555 BICRAQ9NZM4 1560 aa11.61□□□□□ -0.55
HMGB1P20-201ENST00000402555 DNAJC5BQ9UF47 199 aa11.6□□□□□ -0.55
HMGB1P20-201ENST00000402555 PPP4R3CPQ6ZMV5 832 aa11.59□□□□□ -0.55
HMGB1P20-201ENST00000402555 SCRIBQ14160 1630 aa11.57□□□□□ -0.56
HMGB1P20-201ENST00000402555 SHROOM4Q9ULL8 1493 aa11.4□□□□□ -0.58
HMGB1P20-201ENST00000402555 CNKSR2Q8WXI2 1034 aa11.37□□□□□ -0.59
HMGB1P20-201ENST00000402555 HOXD11P31277 338 aaPredicted RBP11.34□□□□□ -0.59
HMGB1P20-201ENST00000402555 EIF4G1Q04637 1599 aaKnown RBP11.3□□□□□ -0.6
HMGB1P20-201ENST00000402555 CC2D2AQ9P2K1 1620 aa11.29□□□□□ -0.6
HMGB1P20-201ENST00000402555 RNF216Q9NWF9 866 aaPredicted RBP11.26□□□□□ -0.61
HMGB1P20-201ENST00000402555 CECR2Q9BXF3 1484 aa11.24□□□□□ -0.61
HMGB1P20-201ENST00000402555 DCAF8L1A6NGE4 600 aa11.17□□□□□ -0.62
HMGB1P20-201ENST00000402555 NCBP3Q53F19 620 aaKnown RBP11.15□□□□□ -0.62
HMGB1P20-201ENST00000402555 SMARCA4P51532 1647 aa11.02□□□□□ -0.64
HMGB1P20-201ENST00000402555 NPM3O75607 178 aaKnown RBP11.01□□□□□ -0.65
HMGB1P20-201ENST00000402555 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
HMGB1P20-201ENST00000402555 RNF39Q9H2S5 420 aa10.98□□□□□ -0.65
HMGB1P20-201ENST00000402555 NCAPD3P42695 1498 aa10.98□□□□□ -0.65
HMGB1P20-201ENST00000402555 BAZ1AQ9NRL2 1556 aaPredicted RBP10.98□□□□□ -0.65
HMGB1P20-201ENST00000402555 SMARCA2P51531 1590 aa10.95□□□□□ -0.66
HMGB1P20-201ENST00000402555 MROH2BQ7Z745 1585 aa10.95□□□□□ -0.66
HMGB1P20-201ENST00000402555 CACNB1Q02641 598 aaPredicted RBP10.95□□□□□ -0.66
HMGB1P20-201ENST00000402555 HMGXB3Q12766 1538 aa10.91□□□□□ -0.66
HMGB1P20-201ENST00000402555 BAZ1BQ9UIG0 1483 aaKnown RBP10.89□□□□□ -0.67
HMGB1P20-201ENST00000402555 PEG3Q9GZU2 1588 aa10.89□□□□□ -0.67
HMGB1P20-201ENST00000402555 KCNA4P22459 653 aa10.85□□□□□ -0.67
HMGB1P20-201ENST00000402555 WIZO95785 1651 aa10.83□□□□□ -0.68
HMGB1P20-201ENST00000402555 C1QBPQ07021 282 aaKnown RBP10.82□□□□□ -0.68
HMGB1P20-201ENST00000402555 NESP48681 1621 aa10.8□□□□□ -0.68
HMGB1P20-201ENST00000402555 RSF1Q96T23 1441 aaPredicted RBP10.77□□□□□ -0.68
HMGB1P20-201ENST00000402555 ERCC6Q03468 1493 aa10.77□□□□□ -0.69
HMGB1P20-201ENST00000402555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.74□□□□□ -0.69
HMGB1P20-201ENST00000402555 LAMC3Q9Y6N6 1575 aa10.7□□□□□ -0.7
HMGB1P20-201ENST00000402555 TOP2AP11388 1531 aaKnown RBP10.68□□□□□ -0.7
HMGB1P20-201ENST00000402555 KIF21AQ7Z4S6 1674 aa10.66□□□□□ -0.7
HMGB1P20-201ENST00000402555 CADPSQ9ULU8 1353 aa10.66□□□□□ -0.7
HMGB1P20-201ENST00000402555 CUX2O14529 1486 aa10.66□□□□□ -0.7
HMGB1P20-201ENST00000402555 PDS5BQ9NTI5 1447 aa10.64□□□□□ -0.71
HMGB1P20-201ENST00000402555 THOC2Q8NI27 1593 aaKnown RBP10.64□□□□□ -0.71
HMGB1P20-201ENST00000402555 CCDC88BA6NC98 1476 aa10.57□□□□□ -0.72
HMGB1P20-201ENST00000402555 CFTRP13569 1480 aa10.57□□□□□ -0.72
HMGB1P20-201ENST00000402555 U3KPZ7 1027 aaPredicted RBP10.56□□□□□ -0.72
HMGB1P20-201ENST00000402555 FANCD2Q9BXW9 1451 aa10.55□□□□□ -0.72
HMGB1P20-201ENST00000402555 MRC2Q9UBG0 1479 aa10.55□□□□□ -0.72
HMGB1P20-201ENST00000402555 CEP164Q9UPV0 1460 aa10.55□□□□□ -0.72
HMGB1P20-201ENST00000402555 SLC4A2P04920 1241 aa10.51□□□□□ -0.73
HMGB1P20-201ENST00000402555 WDR62O43379 1518 aa10.51□□□□□ -0.73
HMGB1P20-201ENST00000402555 PRDM2Q13029 1718 aa10.48□□□□□ -0.73
HMGB1P20-201ENST00000402555 URB2Q14146 1524 aaKnown RBP10.48□□□□□ -0.73
HMGB1P20-201ENST00000402555 SUPT5HO00267 1087 aaKnown RBP10.47□□□□□ -0.73
HMGB1P20-201ENST00000402555 DNAJC5Q9H3Z4 198 aa10.47□□□□□ -0.73
HMGB1P20-201ENST00000402555 TOPBP1Q92547 1522 aa10.38□□□□□ -0.75
HMGB1P20-201ENST00000402555 SPINK5Q9NQ38 1064 aaPredicted RBP10.37□□□□□ -0.75
HMGB1P20-201ENST00000402555 DNMBPQ6XZF7 1577 aa10.35□□□□□ -0.75
HMGB1P20-201ENST00000402555 ZNF608Q9ULD9 1512 aaPredicted RBP10.33□□□□□ -0.76
HMGB1P20-201ENST00000402555 ABCC8Q09428 1581 aa10.32□□□□□ -0.76
HMGB1P20-201ENST00000402555 IFT140Q96RY7 1462 aa10.32□□□□□ -0.76
HMGB1P20-201ENST00000402555 CAPN15O75808 1086 aa10.32□□□□□ -0.76
HMGB1P20-201ENST00000402555 DSG3P32926 999 aa10.29□□□□□ -0.76
HMGB1P20-201ENST00000402555 POLA1P09884 1462 aaPredicted RBP10.29□□□□□ -0.76
HMGB1P20-201ENST00000402555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.28□□□□□ -0.76
HMGB1P20-201ENST00000402555 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
HMGB1P20-201ENST00000402555 CUX1P39880 1505 aa10.28□□□□□ -0.76
HMGB1P20-201ENST00000402555 TARBP1Q13395 1621 aaKnown RBP10.27□□□□□ -0.77
HMGB1P20-201ENST00000402555 RAD54L2Q9Y4B4 1467 aa10.27□□□□□ -0.77
HMGB1P20-201ENST00000402555 EIF4G3O43432 1585 aaKnown RBP10.26□□□□□ -0.77
HMGB1P20-201ENST00000402555 AQRO60306 1485 aaKnown RBP eCLIP10.25□□□□□ -0.77
HMGB1P20-201ENST00000402555 FGD5Q6ZNL6 1462 aa10.25□□□□□ -0.77
HMGB1P20-201ENST00000402555 APLP2Q06481 763 aa10.25□□□□□ -0.77
HMGB1P20-201ENST00000402555 SLC4A1APQ9BWU0 796 aaKnown RBP10.24□□□□□ -0.77
HMGB1P20-201ENST00000402555 SOGA1O94964 1423 aa10.24□□□□□ -0.77
HMGB1P20-201ENST00000402555 SAMD1Q6SPF0 538 aaPredicted RBP10.22□□□□□ -0.77
HMGB1P20-201ENST00000402555 TDRD9Q8NDG6 1382 aaKnown RBP10.22□□□□□ -0.77
HMGB1P20-201ENST00000402555 OSCARQ8IYS5 282 aa10.21□□□□□ -0.77
HMGB1P20-201ENST00000402555 ZNF219Q9P2Y4 722 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms