RNA–Protein interactions for RNA: ENST00000397163.7

CAPN3-206, Transcript of calpain 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CAPN3, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-206ENST00000397163 NISCHQ9Y2I1 1504 aa17.88■□□□□ 0.45
CAPN3-206ENST00000397163 CCDC180Q9P1Z9 1646 aa15.87■□□□□ 0.13
CAPN3-206ENST00000397163 SHROOM4Q9ULL8 1493 aa15.66■□□□□ 0.1
CAPN3-206ENST00000397163 SUPT5HO00267 1087 aaKnown RBP15.53■□□□□ 0.08
CAPN3-206ENST00000397163 HRCP23327 699 aa15.32■□□□□ 0.04
CAPN3-206ENST00000397163 PPARGC1BQ86YN6 1023 aaKnown RBP15.25■□□□□ 0.03
CAPN3-206ENST00000397163 CHIC1Q5VXU3 224 aa15.17■□□□□ 0.02
CAPN3-206ENST00000397163 MYO15BQ96JP2 1530 aa15.14■□□□□ 0.01
CAPN3-206ENST00000397163 ZCCHC6Q5VYS8 1495 aaKnown RBP15.14■□□□□ 0.01
CAPN3-206ENST00000397163 PCGF6Q9BYE7 350 aa15.11■□□□□ 0.01
CAPN3-206ENST00000397163 ABCC9O60706 1549 aa15.04■□□□□ -0
CAPN3-206ENST00000397163 DCAF8L2P0C7V8 631 aa14.98□□□□□ -0.01
CAPN3-206ENST00000397163 DCAF1Q9Y4B6 1507 aa14.98□□□□□ -0.01
CAPN3-206ENST00000397163 PELP1Q8IZL8 1130 aaKnown RBP14.9□□□□□ -0.02
CAPN3-206ENST00000397163 LOC105371045A0A1W2PR82 267 aa14.8□□□□□ -0.04
CAPN3-206ENST00000397163 NACADO15069 1562 aa14.75□□□□□ -0.05
CAPN3-206ENST00000397163 SCAF1Q9H7N4 1312 aaKnown RBP14.72□□□□□ -0.05
CAPN3-206ENST00000397163 TRIM26Q12899 539 aaPredicted RBP14.69□□□□□ -0.06
CAPN3-206ENST00000397163 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
CAPN3-206ENST00000397163 ZEB1P37275 1124 aaPredicted RBP14.51□□□□□ -0.09
CAPN3-206ENST00000397163 TRIM41Q8WV44 630 aa14.4□□□□□ -0.1
CAPN3-206ENST00000397163 FAM9AQ8IZU1 332 aaPredicted RBP14.37□□□□□ -0.11
CAPN3-206ENST00000397163 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
CAPN3-206ENST00000397163 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
CAPN3-206ENST00000397163 MYT1Q01538 1121 aa14.3□□□□□ -0.12
CAPN3-206ENST00000397163 RSF1Q96T23 1441 aaPredicted RBP14.29□□□□□ -0.12
CAPN3-206ENST00000397163 SCRIBQ14160 1630 aa14.25□□□□□ -0.13
CAPN3-206ENST00000397163 NEUROD1Q13562 356 aa14.25□□□□□ -0.13
CAPN3-206ENST00000397163 GTF3C3Q9Y5Q9 886 aa14.2□□□□□ -0.14
CAPN3-206ENST00000397163 ACIN1Q9UKV3 1341 aaKnown RBP14.2□□□□□ -0.14
CAPN3-206ENST00000397163 BICRAQ9NZM4 1560 aa14.19□□□□□ -0.14
CAPN3-206ENST00000397163 PABPN1Q86U42 306 aaKnown RBP eCLIP14.13□□□□□ -0.15
CAPN3-206ENST00000397163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.09□□□□□ -0.15
CAPN3-206ENST00000397163 CCER1Q8TC90 406 aaPredicted RBP14.09□□□□□ -0.15
CAPN3-206ENST00000397163 DIEXFQ68CQ4 756 aaKnown RBP13.96□□□□□ -0.17
CAPN3-206ENST00000397163 CENPBP07199 599 aaPredicted RBP13.96□□□□□ -0.17
CAPN3-206ENST00000397163 CECR2Q9BXF3 1484 aa13.96□□□□□ -0.18
CAPN3-206ENST00000397163 TTBK1Q5TCY1 1321 aaPredicted RBP13.92□□□□□ -0.18
CAPN3-206ENST00000397163 YTHDC1Q96MU7 727 aaKnown RBP13.92□□□□□ -0.18
CAPN3-206ENST00000397163 MROH2BQ7Z745 1585 aa13.92□□□□□ -0.18
CAPN3-206ENST00000397163 WIZO95785 1651 aa13.84□□□□□ -0.19
CAPN3-206ENST00000397163 BAZ1AQ9NRL2 1556 aaPredicted RBP13.84□□□□□ -0.19
CAPN3-206ENST00000397163 SMARCA4P51532 1647 aa13.8□□□□□ -0.2
CAPN3-206ENST00000397163 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
CAPN3-206ENST00000397163 WRNQ14191 1432 aaPredicted RBP eCLIP13.76□□□□□ -0.21
CAPN3-206ENST00000397163 ZNF316A6NFI3 1004 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-206ENST00000397163 CEP162Q5TB80 1403 aa13.75□□□□□ -0.21
CAPN3-206ENST00000397163 EIF4G1Q04637 1599 aaKnown RBP13.73□□□□□ -0.21
CAPN3-206ENST00000397163 CCDC88BA6NC98 1476 aa13.71□□□□□ -0.21
CAPN3-206ENST00000397163 UBTFP17480 764 aaKnown RBP13.71□□□□□ -0.22
CAPN3-206ENST00000397163 ABCC8Q09428 1581 aa13.69□□□□□ -0.22
CAPN3-206ENST00000397163 BCL11AQ9H165 835 aa13.69□□□□□ -0.22
CAPN3-206ENST00000397163 TNIKQ9UKE5 1360 aa13.69□□□□□ -0.22
CAPN3-206ENST00000397163 SOGA1O94964 1423 aa13.67□□□□□ -0.22
CAPN3-206ENST00000397163 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
CAPN3-206ENST00000397163 SMARCA2P51531 1590 aa13.63□□□□□ -0.23
CAPN3-206ENST00000397163 HNRNPUL2Q1KMD3 747 aaKnown RBP13.61□□□□□ -0.23
CAPN3-206ENST00000397163 MIER1Q8N108 512 aa13.61□□□□□ -0.23
CAPN3-206ENST00000397163 TOP2AP11388 1531 aaKnown RBP13.6□□□□□ -0.23
CAPN3-206ENST00000397163 HMGXB3Q12766 1538 aa13.6□□□□□ -0.23
CAPN3-206ENST00000397163 EEA1Q15075 1411 aa13.59□□□□□ -0.23
CAPN3-206ENST00000397163 CC2D2AQ9P2K1 1620 aa13.59□□□□□ -0.23
CAPN3-206ENST00000397163 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.24
CAPN3-206ENST00000397163 NCAPD3P42695 1498 aa13.57□□□□□ -0.24
CAPN3-206ENST00000397163 RUSC2Q8N2Y8 1516 aa13.57□□□□□ -0.24
CAPN3-206ENST00000397163 DNAJC5BQ9UF47 199 aa13.55□□□□□ -0.24
CAPN3-206ENST00000397163 GOLGA3Q08378 1498 aa13.55□□□□□ -0.24
CAPN3-206ENST00000397163 APLP2Q06481 763 aa13.49□□□□□ -0.25
CAPN3-206ENST00000397163 ANP32EQ9BTT0 268 aa13.49□□□□□ -0.25
CAPN3-206ENST00000397163 BAZ1BQ9UIG0 1483 aaKnown RBP13.46□□□□□ -0.26
CAPN3-206ENST00000397163 CLIP1P30622 1438 aa13.44□□□□□ -0.26
CAPN3-206ENST00000397163 CEP164Q9UPV0 1460 aa13.43□□□□□ -0.26
CAPN3-206ENST00000397163 RANGAP1P46060 587 aaPredicted RBP13.42□□□□□ -0.26
CAPN3-206ENST00000397163 SUPT16HQ9Y5B9 1047 aaKnown RBP13.4□□□□□ -0.26
CAPN3-206ENST00000397163 TSHZ2Q9NRE2 1034 aa13.4□□□□□ -0.26
CAPN3-206ENST00000397163 VPS8Q8N3P4 1428 aa13.39□□□□□ -0.27
CAPN3-206ENST00000397163 KIF21BO75037 1637 aa13.34□□□□□ -0.27
CAPN3-206ENST00000397163 CLSPNQ9HAW4 1339 aa13.32□□□□□ -0.28
CAPN3-206ENST00000397163 BCANQ96GW7 911 aa13.31□□□□□ -0.28
CAPN3-206ENST00000397163 SYNJ1O43426 1573 aa13.3□□□□□ -0.28
CAPN3-206ENST00000397163 RAPGEF2Q9Y4G8 1499 aa13.3□□□□□ -0.28
CAPN3-206ENST00000397163 DHX57Q6P158 1386 aaKnown RBP13.28□□□□□ -0.28
CAPN3-206ENST00000397163 PRKCSHP14314 528 aaPredicted RBP13.27□□□□□ -0.28
CAPN3-206ENST00000397163 PRDM2Q13029 1718 aa13.25□□□□□ -0.29
CAPN3-206ENST00000397163 KANK4Q5T7N3 995 aaPredicted RBP13.2□□□□□ -0.3
CAPN3-206ENST00000397163 CFTRP13569 1480 aa13.18□□□□□ -0.3
CAPN3-206ENST00000397163 LAMC3Q9Y6N6 1575 aa13.17□□□□□ -0.3
CAPN3-206ENST00000397163 ITGAEP38570 1179 aa13.15□□□□□ -0.3
CAPN3-206ENST00000397163 CADPSQ9ULU8 1353 aa13.14□□□□□ -0.31
CAPN3-206ENST00000397163 ARAP1Q96P48 1450 aa13.13□□□□□ -0.31
CAPN3-206ENST00000397163 KCNH8Q96L42 1107 aa13.11□□□□□ -0.31
CAPN3-206ENST00000397163 RRBP1Q9P2E9 1410 aaKnown RBP13.11□□□□□ -0.31
CAPN3-206ENST00000397163 CCNB3Q8WWL7 1395 aa13.09□□□□□ -0.31
CAPN3-206ENST00000397163 PRXQ9BXM0 1461 aa13.09□□□□□ -0.31
CAPN3-206ENST00000397163 TOP2BQ02880 1626 aa13.08□□□□□ -0.32
CAPN3-206ENST00000397163 ERICH3Q5RHP9 1530 aa13.08□□□□□ -0.32
CAPN3-206ENST00000397163 FKBP8Q14318 412 aa13.07□□□□□ -0.32
CAPN3-206ENST00000397163 NESP48681 1621 aa13.07□□□□□ -0.32
CAPN3-206ENST00000397163 RBM19Q9Y4C8 960 aaKnown RBP13.06□□□□□ -0.32
CAPN3-206ENST00000397163 PDS5BQ9NTI5 1447 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms