RNA–Protein interactions for RNA: ENST00000394164.5

PSEN1-204, Transcript of presenilin 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PSEN1, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-204ENST00000394164 NISCHQ9Y2I1 1504 aa20.27■□□□□ 0.84
PSEN1-204ENST00000394164 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
PSEN1-204ENST00000394164 DCAF8L2P0C7V8 631 aa17.46■□□□□ 0.39
PSEN1-204ENST00000394164 SUPT5HO00267 1087 aaKnown RBP17.32■□□□□ 0.36
PSEN1-204ENST00000394164 ZCCHC6Q5VYS8 1495 aaKnown RBP17.07■□□□□ 0.32
PSEN1-204ENST00000394164 CCDC180Q9P1Z9 1646 aa17.06■□□□□ 0.32
PSEN1-204ENST00000394164 HRCP23327 699 aa16.65■□□□□ 0.26
PSEN1-204ENST00000394164 PPARGC1BQ86YN6 1023 aaKnown RBP16.57■□□□□ 0.24
PSEN1-204ENST00000394164 CHIC1Q5VXU3 224 aa16.56■□□□□ 0.24
PSEN1-204ENST00000394164 MYO15BQ96JP2 1530 aa16.45■□□□□ 0.22
PSEN1-204ENST00000394164 PCGF6Q9BYE7 350 aa16.43■□□□□ 0.22
PSEN1-204ENST00000394164 DCAF1Q9Y4B6 1507 aa16.39■□□□□ 0.21
PSEN1-204ENST00000394164 ABCC9O60706 1549 aa16.39■□□□□ 0.21
PSEN1-204ENST00000394164 SCRIBQ14160 1630 aa16.35■□□□□ 0.21
PSEN1-204ENST00000394164 LOC105371045A0A1W2PR82 267 aa16.27■□□□□ 0.19
PSEN1-204ENST00000394164 EHMT2Q96KQ7 1210 aa16.16■□□□□ 0.18
PSEN1-204ENST00000394164 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
PSEN1-204ENST00000394164 FAM9AQ8IZU1 332 aaPredicted RBP16.1■□□□□ 0.17
PSEN1-204ENST00000394164 RSF1Q96T23 1441 aaPredicted RBP16.09■□□□□ 0.17
PSEN1-204ENST00000394164 CECR2Q9BXF3 1484 aa16■□□□□ 0.15
PSEN1-204ENST00000394164 TRIM41Q8WV44 630 aa16■□□□□ 0.15
PSEN1-204ENST00000394164 SCAF1Q9H7N4 1312 aaKnown RBP15.96■□□□□ 0.14
PSEN1-204ENST00000394164 RB1CC1Q8TDY2 1594 aa15.93■□□□□ 0.14
PSEN1-204ENST00000394164 NACADO15069 1562 aa15.9■□□□□ 0.14
PSEN1-204ENST00000394164 MROH2BQ7Z745 1585 aa15.86■□□□□ 0.13
PSEN1-204ENST00000394164 PABPN1Q86U42 306 aaKnown RBP eCLIP15.81■□□□□ 0.12
PSEN1-204ENST00000394164 WIZO95785 1651 aa15.78■□□□□ 0.12
PSEN1-204ENST00000394164 TRIM26Q12899 539 aaPredicted RBP15.64■□□□□ 0.09
PSEN1-204ENST00000394164 TTBK1Q5TCY1 1321 aaPredicted RBP15.56■□□□□ 0.08
PSEN1-204ENST00000394164 BAZ1AQ9NRL2 1556 aaPredicted RBP15.55■□□□□ 0.08
PSEN1-204ENST00000394164 UNC13AQ9UPW8 1703 aa15.49■□□□□ 0.07
PSEN1-204ENST00000394164 MYT1Q01538 1121 aa15.49■□□□□ 0.07
PSEN1-204ENST00000394164 ABCC8Q09428 1581 aa15.48■□□□□ 0.07
PSEN1-204ENST00000394164 NEUROD1Q13562 356 aa15.48■□□□□ 0.07
PSEN1-204ENST00000394164 ZEB1P37275 1124 aaPredicted RBP15.46■□□□□ 0.07
PSEN1-204ENST00000394164 CCDC88BA6NC98 1476 aa15.46■□□□□ 0.06
PSEN1-204ENST00000394164 SMARCA4P51532 1647 aa15.44■□□□□ 0.06
PSEN1-204ENST00000394164 ACIN1Q9UKV3 1341 aaKnown RBP15.44■□□□□ 0.06
PSEN1-204ENST00000394164 GTF3C3Q9Y5Q9 886 aa15.43■□□□□ 0.06
PSEN1-204ENST00000394164 TOP2AP11388 1531 aaKnown RBP15.38■□□□□ 0.05
PSEN1-204ENST00000394164 SMARCA2P51531 1590 aa15.34■□□□□ 0.05
PSEN1-204ENST00000394164 SOGA1O94964 1423 aa15.33■□□□□ 0.04
PSEN1-204ENST00000394164 UBTFP17480 764 aaKnown RBP15.33■□□□□ 0.04
PSEN1-204ENST00000394164 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.04
PSEN1-204ENST00000394164 RANGAP1P46060 587 aaPredicted RBP15.32■□□□□ 0.04
PSEN1-204ENST00000394164 EIF4G1Q04637 1599 aaKnown RBP15.28■□□□□ 0.04
PSEN1-204ENST00000394164 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
PSEN1-204ENST00000394164 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
PSEN1-204ENST00000394164 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
PSEN1-204ENST00000394164 CENPBP07199 599 aaPredicted RBP15.2■□□□□ 0.02
PSEN1-204ENST00000394164 CCER1Q8TC90 406 aaPredicted RBP15.15■□□□□ 0.02
PSEN1-204ENST00000394164 YTHDC1Q96MU7 727 aaKnown RBP15.15■□□□□ 0.02
PSEN1-204ENST00000394164 WRNQ14191 1432 aaPredicted RBP eCLIP15.15■□□□□ 0.02
PSEN1-204ENST00000394164 CEP162Q5TB80 1403 aa15.14■□□□□ 0.01
PSEN1-204ENST00000394164 DIEXFQ68CQ4 756 aaKnown RBP15.14■□□□□ 0.01
PSEN1-204ENST00000394164 BAZ1BQ9UIG0 1483 aaKnown RBP15.13■□□□□ 0.01
PSEN1-204ENST00000394164 ATAD2BQ9ULI0 1458 aa15.13■□□□□ 0.01
PSEN1-204ENST00000394164 SYNJ1O43426 1573 aa15.04■□□□□ -0
PSEN1-204ENST00000394164 TNIKQ9UKE5 1360 aa15.03■□□□□ -0
PSEN1-204ENST00000394164 PEG3Q9GZU2 1588 aa14.99□□□□□ -0.01
PSEN1-204ENST00000394164 HNRNPUL2Q1KMD3 747 aaKnown RBP14.99□□□□□ -0.01
PSEN1-204ENST00000394164 GOLGA3Q08378 1498 aa14.97□□□□□ -0.01
PSEN1-204ENST00000394164 EEA1Q15075 1411 aa14.95□□□□□ -0.02
PSEN1-204ENST00000394164 RAPGEF2Q9Y4G8 1499 aa14.91□□□□□ -0.02
PSEN1-204ENST00000394164 APLP2Q06481 763 aa14.9□□□□□ -0.02
PSEN1-204ENST00000394164 CLIP1P30622 1438 aa14.9□□□□□ -0.02
PSEN1-204ENST00000394164 CEP164Q9UPV0 1460 aa14.88□□□□□ -0.03
PSEN1-204ENST00000394164 BCL11AQ9H165 835 aa14.79□□□□□ -0.04
PSEN1-204ENST00000394164 NCAPD3P42695 1498 aa14.78□□□□□ -0.04
PSEN1-204ENST00000394164 MIER1Q8N108 512 aa14.77□□□□□ -0.05
PSEN1-204ENST00000394164 TOP2BQ02880 1626 aa14.76□□□□□ -0.05
PSEN1-204ENST00000394164 KIF21BO75037 1637 aa14.75□□□□□ -0.05
PSEN1-204ENST00000394164 CUX1P39880 1505 aa14.74□□□□□ -0.05
PSEN1-204ENST00000394164 ZNF316A6NFI3 1004 aaPredicted RBP14.74□□□□□ -0.05
PSEN1-204ENST00000394164 ITGAEP38570 1179 aa14.73□□□□□ -0.05
PSEN1-204ENST00000394164 VPS8Q8N3P4 1428 aa14.73□□□□□ -0.05
PSEN1-204ENST00000394164 KANK4Q5T7N3 995 aaPredicted RBP14.71□□□□□ -0.05
PSEN1-204ENST00000394164 ATP1B4Q9UN42 357 aaPredicted RBP14.69□□□□□ -0.06
PSEN1-204ENST00000394164 HMGXB3Q12766 1538 aa14.69□□□□□ -0.06
PSEN1-204ENST00000394164 P3H3Q8IVL6 736 aa14.68□□□□□ -0.06
PSEN1-204ENST00000394164 KIF27Q86VH2 1401 aa14.67□□□□□ -0.06
PSEN1-204ENST00000394164 CFTRP13569 1480 aa14.66□□□□□ -0.06
PSEN1-204ENST00000394164 BIVM-ERCC5R4GMW8 1640 aa14.64□□□□□ -0.07
PSEN1-204ENST00000394164 CUX2O14529 1486 aa14.63□□□□□ -0.07
PSEN1-204ENST00000394164 ANP32EQ9BTT0 268 aa14.63□□□□□ -0.07
PSEN1-204ENST00000394164 PRXQ9BXM0 1461 aa14.62□□□□□ -0.07
PSEN1-204ENST00000394164 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
PSEN1-204ENST00000394164 ARAP1Q96P48 1450 aa14.6□□□□□ -0.07
PSEN1-204ENST00000394164 DNAJC5BQ9UF47 199 aa14.59□□□□□ -0.07
PSEN1-204ENST00000394164 CC2D2AQ9P2K1 1620 aa14.57□□□□□ -0.08
PSEN1-204ENST00000394164 SUPT16HQ9Y5B9 1047 aaKnown RBP14.57□□□□□ -0.08
PSEN1-204ENST00000394164 IGF1RP08069 1367 aa14.55□□□□□ -0.08
PSEN1-204ENST00000394164 TSHZ2Q9NRE2 1034 aa14.55□□□□□ -0.08
PSEN1-204ENST00000394164 NESP48681 1621 aa14.55□□□□□ -0.08
PSEN1-204ENST00000394164 FGD5Q6ZNL6 1462 aa14.54□□□□□ -0.08
PSEN1-204ENST00000394164 ERICH3Q5RHP9 1530 aa14.52□□□□□ -0.09
PSEN1-204ENST00000394164 CARMIL1Q5VZK9 1371 aa14.52□□□□□ -0.09
PSEN1-204ENST00000394164 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
PSEN1-204ENST00000394164 ARHGAP35Q9NRY4 1499 aa14.5□□□□□ -0.09
PSEN1-204ENST00000394164 FANCD2Q9BXW9 1451 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms