RNA–Protein interactions for RNA: ENST00000392995.7

PPM1D-202, Transcript of protein phosphatase, Mg2+/Mn2+ dependent 1D, humanhuman

TSL 2

Gene PPM1D, Length 2,996 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPM1D-202ENST00000392995 NISCHQ9Y2I1 1504 aa30.68■■■□□ 2.5
PPM1D-202ENST00000392995 CCDC180Q9P1Z9 1646 aa26.37■■□□□ 1.81
PPM1D-202ENST00000392995 DCAF8L2P0C7V8 631 aa25.82■■□□□ 1.72
PPM1D-202ENST00000392995 ZCCHC6Q5VYS8 1495 aaKnown RBP25.78■■□□□ 1.72
PPM1D-202ENST00000392995 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
PPM1D-202ENST00000392995 SUPT5HO00267 1087 aaKnown RBP25.32■■□□□ 1.64
PPM1D-202ENST00000392995 ABCC9O60706 1549 aa25.26■■□□□ 1.64
PPM1D-202ENST00000392995 DCAF1Q9Y4B6 1507 aa25.11■■□□□ 1.61
PPM1D-202ENST00000392995 HRCP23327 699 aa25.01■■□□□ 1.59
PPM1D-202ENST00000392995 PPARGC1BQ86YN6 1023 aaKnown RBP24.9■■□□□ 1.58
PPM1D-202ENST00000392995 PCGF6Q9BYE7 350 aa24.87■■□□□ 1.57
PPM1D-202ENST00000392995 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
PPM1D-202ENST00000392995 SCRIBQ14160 1630 aa24.7■■□□□ 1.54
PPM1D-202ENST00000392995 NACADO15069 1562 aa24.6■■□□□ 1.53
PPM1D-202ENST00000392995 CHIC1Q5VXU3 224 aa24.59■■□□□ 1.53
PPM1D-202ENST00000392995 RB1CC1Q8TDY2 1594 aa24.39■■□□□ 1.49
PPM1D-202ENST00000392995 LOC105371045A0A1W2PR82 267 aa24.28■■□□□ 1.48
PPM1D-202ENST00000392995 CECR2Q9BXF3 1484 aa24.05■■□□□ 1.44
PPM1D-202ENST00000392995 PABPN1Q86U42 306 aaKnown RBP eCLIP24.05■■□□□ 1.44
PPM1D-202ENST00000392995 RSF1Q96T23 1441 aaPredicted RBP24.01■■□□□ 1.43
PPM1D-202ENST00000392995 UNC13AQ9UPW8 1703 aa24■■□□□ 1.43
PPM1D-202ENST00000392995 MROH2BQ7Z745 1585 aa23.85■■□□□ 1.41
PPM1D-202ENST00000392995 TRIM26Q12899 539 aaPredicted RBP23.82■■□□□ 1.4
PPM1D-202ENST00000392995 BICRAQ9NZM4 1560 aa23.78■■□□□ 1.4
PPM1D-202ENST00000392995 SCAF1Q9H7N4 1312 aaKnown RBP23.71■■□□□ 1.39
PPM1D-202ENST00000392995 WIZO95785 1651 aa23.67■■□□□ 1.38
PPM1D-202ENST00000392995 EHMT2Q96KQ7 1210 aa23.66■■□□□ 1.38
PPM1D-202ENST00000392995 BAZ1AQ9NRL2 1556 aaPredicted RBP23.6■■□□□ 1.37
PPM1D-202ENST00000392995 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
PPM1D-202ENST00000392995 SMARCA4P51532 1647 aa23.51■■□□□ 1.35
PPM1D-202ENST00000392995 PELP1Q8IZL8 1130 aaKnown RBP23.5■■□□□ 1.35
PPM1D-202ENST00000392995 ZEB1P37275 1124 aaPredicted RBP23.36■■□□□ 1.33
PPM1D-202ENST00000392995 TOP2AP11388 1531 aaKnown RBP23.24■■□□□ 1.31
PPM1D-202ENST00000392995 TRIM41Q8WV44 630 aa23.23■■□□□ 1.31
PPM1D-202ENST00000392995 CCDC88BA6NC98 1476 aa23.18■■□□□ 1.3
PPM1D-202ENST00000392995 NEUROD1Q13562 356 aa23.16■■□□□ 1.3
PPM1D-202ENST00000392995 ATAD2BQ9ULI0 1458 aa23.14■■□□□ 1.29
PPM1D-202ENST00000392995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.14■■□□□ 1.29
PPM1D-202ENST00000392995 SMARCA2P51531 1590 aa23.11■■□□□ 1.29
PPM1D-202ENST00000392995 PEG3Q9GZU2 1588 aa23.07■■□□□ 1.28
PPM1D-202ENST00000392995 ACIN1Q9UKV3 1341 aaKnown RBP23.06■■□□□ 1.28
PPM1D-202ENST00000392995 EIF4G1Q04637 1599 aaKnown RBP23.05■■□□□ 1.28
PPM1D-202ENST00000392995 BAZ1BQ9UIG0 1483 aaKnown RBP23.03■■□□□ 1.28
PPM1D-202ENST00000392995 GTF3C3Q9Y5Q9 886 aa23.01■■□□□ 1.27
PPM1D-202ENST00000392995 TTBK1Q5TCY1 1321 aaPredicted RBP22.99■■□□□ 1.27
PPM1D-202ENST00000392995 CCER1Q8TC90 406 aaPredicted RBP22.96■■□□□ 1.27
PPM1D-202ENST00000392995 ABCC8Q09428 1581 aa22.89■■□□□ 1.25
PPM1D-202ENST00000392995 DIEXFQ68CQ4 756 aaKnown RBP22.84■■□□□ 1.25
PPM1D-202ENST00000392995 NCAPD3P42695 1498 aa22.81■■□□□ 1.24
PPM1D-202ENST00000392995 YTHDC1Q96MU7 727 aaKnown RBP22.73■■□□□ 1.23
PPM1D-202ENST00000392995 HMGXB3Q12766 1538 aa22.7■■□□□ 1.22
PPM1D-202ENST00000392995 CENPBP07199 599 aaPredicted RBP22.69■■□□□ 1.22
PPM1D-202ENST00000392995 CC2D2AQ9P2K1 1620 aa22.69■■□□□ 1.22
PPM1D-202ENST00000392995 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
PPM1D-202ENST00000392995 SOGA1O94964 1423 aa22.53■■□□□ 1.2
PPM1D-202ENST00000392995 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.2
PPM1D-202ENST00000392995 SYNJ1O43426 1573 aa22.48■■□□□ 1.19
PPM1D-202ENST00000392995 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
PPM1D-202ENST00000392995 CFTRP13569 1480 aa22.41■■□□□ 1.18
PPM1D-202ENST00000392995 MYT1Q01538 1121 aa22.37■■□□□ 1.17
PPM1D-202ENST00000392995 MIER1Q8N108 512 aa22.36■■□□□ 1.17
PPM1D-202ENST00000392995 ZNF316A6NFI3 1004 aaPredicted RBP22.35■■□□□ 1.17
PPM1D-202ENST00000392995 CADPSQ9ULU8 1353 aa22.34■■□□□ 1.17
PPM1D-202ENST00000392995 CSRNP3Q8WYN3 585 aa22.3■■□□□ 1.16
PPM1D-202ENST00000392995 NESP48681 1621 aa22.27■■□□□ 1.16
PPM1D-202ENST00000392995 CUX1P39880 1505 aa22.24■■□□□ 1.15
PPM1D-202ENST00000392995 TOP2BQ02880 1626 aa22.23■■□□□ 1.15
PPM1D-202ENST00000392995 HNRNPUL2Q1KMD3 747 aaKnown RBP22.22■■□□□ 1.15
PPM1D-202ENST00000392995 UBTFP17480 764 aaKnown RBP22.18■■□□□ 1.14
PPM1D-202ENST00000392995 EEA1Q15075 1411 aa22.14■■□□□ 1.13
PPM1D-202ENST00000392995 BIVM-ERCC5R4GMW8 1640 aa22.14■■□□□ 1.13
PPM1D-202ENST00000392995 FANCD2Q9BXW9 1451 aa22.12■■□□□ 1.13
PPM1D-202ENST00000392995 CEP162Q5TB80 1403 aa22.09■■□□□ 1.13
PPM1D-202ENST00000392995 PRDM2Q13029 1718 aa22.08■■□□□ 1.13
PPM1D-202ENST00000392995 RANGAP1P46060 587 aaPredicted RBP22.05■■□□□ 1.12
PPM1D-202ENST00000392995 GOLGA3Q08378 1498 aa22.01■■□□□ 1.11
PPM1D-202ENST00000392995 RAPGEF2Q9Y4G8 1499 aa22■■□□□ 1.11
PPM1D-202ENST00000392995 TNIKQ9UKE5 1360 aa21.99■■□□□ 1.11
PPM1D-202ENST00000392995 FGD5Q6ZNL6 1462 aa21.98■■□□□ 1.11
PPM1D-202ENST00000392995 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
PPM1D-202ENST00000392995 LAMC3Q9Y6N6 1575 aa21.93■■□□□ 1.1
PPM1D-202ENST00000392995 KIF27Q86VH2 1401 aa21.92■■□□□ 1.1
PPM1D-202ENST00000392995 CUX2O14529 1486 aa21.92■■□□□ 1.1
PPM1D-202ENST00000392995 RAD54L2Q9Y4B4 1467 aa21.9■■□□□ 1.1
PPM1D-202ENST00000392995 KIF21BO75037 1637 aa21.89■■□□□ 1.09
PPM1D-202ENST00000392995 TOPBP1Q92547 1522 aa21.88■■□□□ 1.09
PPM1D-202ENST00000392995 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
PPM1D-202ENST00000392995 PDS5BQ9NTI5 1447 aa21.85■■□□□ 1.09
PPM1D-202ENST00000392995 SUPT16HQ9Y5B9 1047 aaKnown RBP21.85■■□□□ 1.09
PPM1D-202ENST00000392995 POLA1P09884 1462 aaPredicted RBP21.83■■□□□ 1.09
PPM1D-202ENST00000392995 DNMBPQ6XZF7 1577 aa21.83■■□□□ 1.09
PPM1D-202ENST00000392995 PRXQ9BXM0 1461 aa21.83■■□□□ 1.08
PPM1D-202ENST00000392995 KIF21AQ7Z4S6 1674 aa21.81■■□□□ 1.08
PPM1D-202ENST00000392995 IGF1RP08069 1367 aa21.8■■□□□ 1.08
PPM1D-202ENST00000392995 CLIP1P30622 1438 aa21.76■■□□□ 1.07
PPM1D-202ENST00000392995 TSHZ2Q9NRE2 1034 aa21.72■■□□□ 1.07
PPM1D-202ENST00000392995 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
PPM1D-202ENST00000392995 BCANQ96GW7 911 aa21.71■■□□□ 1.07
PPM1D-202ENST00000392995 CARMIL1Q5VZK9 1371 aa21.69■■□□□ 1.06
PPM1D-202ENST00000392995 KCNH8Q96L42 1107 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms