RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 NISCHQ9Y2I1 1504 aa15.25■□□□□ 0.03
CDKL5-201ENST00000379989 CCDC180Q9P1Z9 1646 aa13.42□□□□□ -0.26
CDKL5-201ENST00000379989 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
CDKL5-201ENST00000379989 ZCCHC6Q5VYS8 1495 aaKnown RBP12.89□□□□□ -0.35
CDKL5-201ENST00000379989 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
CDKL5-201ENST00000379989 MYT1Q01538 1121 aa12.82□□□□□ -0.36
CDKL5-201ENST00000379989 HRCP23327 699 aa12.74□□□□□ -0.37
CDKL5-201ENST00000379989 MYO15BQ96JP2 1530 aa12.7□□□□□ -0.38
CDKL5-201ENST00000379989 AEBP2Q6ZN18 517 aaPredicted RBP12.57□□□□□ -0.4
CDKL5-201ENST00000379989 PPARGC1BQ86YN6 1023 aaKnown RBP12.45□□□□□ -0.42
CDKL5-201ENST00000379989 SCAF1Q9H7N4 1312 aaKnown RBP12.41□□□□□ -0.42
CDKL5-201ENST00000379989 NACADO15069 1562 aa12.39□□□□□ -0.43
CDKL5-201ENST00000379989 TTBK1Q5TCY1 1321 aaPredicted RBP12.24□□□□□ -0.45
CDKL5-201ENST00000379989 ABCC9O60706 1549 aa12.19□□□□□ -0.46
CDKL5-201ENST00000379989 RB1CC1Q8TDY2 1594 aa12.18□□□□□ -0.46
CDKL5-201ENST00000379989 UNC13AQ9UPW8 1703 aa12.16□□□□□ -0.46
CDKL5-201ENST00000379989 PCGF6Q9BYE7 350 aa12.14□□□□□ -0.47
CDKL5-201ENST00000379989 SHROOM4Q9ULL8 1493 aa12.1□□□□□ -0.47
CDKL5-201ENST00000379989 DCAF8L2P0C7V8 631 aa12.05□□□□□ -0.48
CDKL5-201ENST00000379989 CHIC1Q5VXU3 224 aa12.03□□□□□ -0.48
CDKL5-201ENST00000379989 PRKCSHP14314 528 aaPredicted RBP12.01□□□□□ -0.49
CDKL5-201ENST00000379989 SCRIBQ14160 1630 aa11.99□□□□□ -0.49
CDKL5-201ENST00000379989 BCL11AQ9H165 835 aa11.97□□□□□ -0.49
CDKL5-201ENST00000379989 ACIN1Q9UKV3 1341 aaKnown RBP11.88□□□□□ -0.51
CDKL5-201ENST00000379989 FAM9AQ8IZU1 332 aaPredicted RBP11.88□□□□□ -0.51
CDKL5-201ENST00000379989 BICRAQ9NZM4 1560 aa11.87□□□□□ -0.51
CDKL5-201ENST00000379989 BAZ1AQ9NRL2 1556 aaPredicted RBP11.83□□□□□ -0.52
CDKL5-201ENST00000379989 NEUROD1Q13562 356 aa11.83□□□□□ -0.52
CDKL5-201ENST00000379989 RSF1Q96T23 1441 aaPredicted RBP11.82□□□□□ -0.52
CDKL5-201ENST00000379989 GTF3C3Q9Y5Q9 886 aa11.81□□□□□ -0.52
CDKL5-201ENST00000379989 SUPT5HO00267 1087 aaKnown RBP11.81□□□□□ -0.52
CDKL5-201ENST00000379989 CENPBP07199 599 aaPredicted RBP11.76□□□□□ -0.53
CDKL5-201ENST00000379989 ZEB1P37275 1124 aaPredicted RBP11.7□□□□□ -0.54
CDKL5-201ENST00000379989 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
CDKL5-201ENST00000379989 SMARCA4P51532 1647 aa11.68□□□□□ -0.54
CDKL5-201ENST00000379989 MROH2BQ7Z745 1585 aa11.65□□□□□ -0.55
CDKL5-201ENST00000379989 ERICH6Q7L0X2 663 aa11.64□□□□□ -0.55
CDKL5-201ENST00000379989 TOP2AP11388 1531 aaKnown RBP11.63□□□□□ -0.55
CDKL5-201ENST00000379989 APLP2Q06481 763 aa11.63□□□□□ -0.55
CDKL5-201ENST00000379989 CECR2Q9BXF3 1484 aa11.61□□□□□ -0.55
CDKL5-201ENST00000379989 TRIM26Q12899 539 aaPredicted RBP11.59□□□□□ -0.55
CDKL5-201ENST00000379989 WIZO95785 1651 aa11.55□□□□□ -0.56
CDKL5-201ENST00000379989 ANP32EQ9BTT0 268 aa11.55□□□□□ -0.56
CDKL5-201ENST00000379989 SMARCA2P51531 1590 aa11.54□□□□□ -0.56
CDKL5-201ENST00000379989 EIF4G1Q04637 1599 aaKnown RBP11.49□□□□□ -0.57
CDKL5-201ENST00000379989 CSRNP3Q8WYN3 585 aa11.46□□□□□ -0.57
CDKL5-201ENST00000379989 HMGXB3Q12766 1538 aa11.43□□□□□ -0.58
CDKL5-201ENST00000379989 ATAD2BQ9ULI0 1458 aa11.39□□□□□ -0.59
CDKL5-201ENST00000379989 CCDC88BA6NC98 1476 aa11.37□□□□□ -0.59
CDKL5-201ENST00000379989 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
CDKL5-201ENST00000379989 BAZ1BQ9UIG0 1483 aaKnown RBP11.34□□□□□ -0.59
CDKL5-201ENST00000379989 EEA1Q15075 1411 aa11.34□□□□□ -0.59
CDKL5-201ENST00000379989 DIEXFQ68CQ4 756 aaKnown RBP11.33□□□□□ -0.6
CDKL5-201ENST00000379989 CC2D2AQ9P2K1 1620 aa11.31□□□□□ -0.6
CDKL5-201ENST00000379989 TRIM41Q8WV44 630 aa11.28□□□□□ -0.6
CDKL5-201ENST00000379989 LOC105371045A0A1W2PR82 267 aa11.28□□□□□ -0.6
CDKL5-201ENST00000379989 PABPN1Q86U42 306 aaKnown RBP eCLIP11.24□□□□□ -0.61
CDKL5-201ENST00000379989 PRDM2Q13029 1718 aa11.24□□□□□ -0.61
CDKL5-201ENST00000379989 TSHZ2Q9NRE2 1034 aa11.24□□□□□ -0.61
CDKL5-201ENST00000379989 YTHDC1Q96MU7 727 aaKnown RBP11.2□□□□□ -0.62
CDKL5-201ENST00000379989 ANO8Q9HCE9 1232 aaPredicted RBP11.17□□□□□ -0.62
CDKL5-201ENST00000379989 BIVM-ERCC5R4GMW8 1640 aa11.16□□□□□ -0.62
CDKL5-201ENST00000379989 WRNQ14191 1432 aaPredicted RBP eCLIP11.15□□□□□ -0.62
CDKL5-201ENST00000379989 TOP2BQ02880 1626 aa11.13□□□□□ -0.63
CDKL5-201ENST00000379989 CFTRP13569 1480 aa11.12□□□□□ -0.63
CDKL5-201ENST00000379989 SUPT16HQ9Y5B9 1047 aaKnown RBP11.11□□□□□ -0.63
CDKL5-201ENST00000379989 DNAJC5BQ9UF47 199 aa11.11□□□□□ -0.63
CDKL5-201ENST00000379989 KIF21BO75037 1637 aa11.09□□□□□ -0.63
CDKL5-201ENST00000379989 ABCC8Q09428 1581 aa11.06□□□□□ -0.64
CDKL5-201ENST00000379989 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.04□□□□□ -0.64
CDKL5-201ENST00000379989 SYNJ1O43426 1573 aa11.03□□□□□ -0.64
CDKL5-201ENST00000379989 CEP164Q9UPV0 1460 aa11.03□□□□□ -0.64
CDKL5-201ENST00000379989 TNIKQ9UKE5 1360 aa11.03□□□□□ -0.64
CDKL5-201ENST00000379989 CLSPNQ9HAW4 1339 aa11.03□□□□□ -0.64
CDKL5-201ENST00000379989 SLC24A1O60721 1099 aa11.03□□□□□ -0.64
CDKL5-201ENST00000379989 UBE2Q2Q8WVN8 375 aa11.02□□□□□ -0.65
CDKL5-201ENST00000379989 GOLGA3Q08378 1498 aa11.02□□□□□ -0.65
CDKL5-201ENST00000379989 ERICH3Q5RHP9 1530 aa11.01□□□□□ -0.65
CDKL5-201ENST00000379989 CCER1Q8TC90 406 aaPredicted RBP11.01□□□□□ -0.65
CDKL5-201ENST00000379989 CADPSQ9ULU8 1353 aa11□□□□□ -0.65
CDKL5-201ENST00000379989 MIER1Q8N108 512 aa11□□□□□ -0.65
CDKL5-201ENST00000379989 LAMC3Q9Y6N6 1575 aa10.99□□□□□ -0.65
CDKL5-201ENST00000379989 ZNF316A6NFI3 1004 aaPredicted RBP10.96□□□□□ -0.65
CDKL5-201ENST00000379989 SALL2Q9Y467 1007 aaPredicted RBP10.96□□□□□ -0.65
CDKL5-201ENST00000379989 EIF5BO60841 1220 aaKnown RBP10.93□□□□□ -0.66
CDKL5-201ENST00000379989 CUX1P39880 1505 aa10.91□□□□□ -0.66
CDKL5-201ENST00000379989 KIF27Q86VH2 1401 aa10.91□□□□□ -0.66
CDKL5-201ENST00000379989 CCDC136Q96JN2 1154 aa10.91□□□□□ -0.66
CDKL5-201ENST00000379989 SOGA1O94964 1423 aa10.9□□□□□ -0.66
CDKL5-201ENST00000379989 MSH5O43196 834 aa10.9□□□□□ -0.66
CDKL5-201ENST00000379989 RBM19Q9Y4C8 960 aaKnown RBP10.89□□□□□ -0.67
CDKL5-201ENST00000379989 DNMBPQ6XZF7 1577 aa10.89□□□□□ -0.67
CDKL5-201ENST00000379989 PRXQ9BXM0 1461 aa10.88□□□□□ -0.67
CDKL5-201ENST00000379989 CEP162Q5TB80 1403 aa10.87□□□□□ -0.67
CDKL5-201ENST00000379989 KIF21AQ7Z4S6 1674 aa10.85□□□□□ -0.67
CDKL5-201ENST00000379989 WDR97A6NE52 1622 aa10.85□□□□□ -0.67
CDKL5-201ENST00000379989 DEKP35659 375 aaKnown RBP10.85□□□□□ -0.67
CDKL5-201ENST00000379989 FANCD2Q9BXW9 1451 aa10.84□□□□□ -0.67
CDKL5-201ENST00000379989 PDS5BQ9NTI5 1447 aa10.83□□□□□ -0.68
CDKL5-201ENST00000379989 ERICH6BQ5W0A0 696 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms