RNA–Protein interactions for RNA: ENST00000377027.1

C9orf85-202, Transcript of chromosome 9 open reading frame 85, humanhuman

TSL 3

Gene C9orf85, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf85-202ENST00000377027 AEBP2Q6ZN18 517 aaPredicted RBP29.56■■■□□ 2.32
C9orf85-202ENST00000377027 CHIC1Q5VXU3 224 aa28.8■■■□□ 2.2
C9orf85-202ENST00000377027 PHF23Q9BUL5 403 aaPredicted RBP25.34■■□□□ 1.65
C9orf85-202ENST00000377027 SENP3Q9H4L4 574 aaPredicted RBP25.07■■□□□ 1.6
C9orf85-202ENST00000377027 NISCHQ9Y2I1 1504 aa24.24■■□□□ 1.47
C9orf85-202ENST00000377027 PLPPR3Q6T4P5 718 aa23.34■■□□□ 1.33
C9orf85-202ENST00000377027 FOXD1Q16676 465 aa23.3■■□□□ 1.32
C9orf85-202ENST00000377027 PPP6R1Q9UPN7 881 aa22.39■■□□□ 1.17
C9orf85-202ENST00000377027 ADRA2BP18089 450 aa22.35■■□□□ 1.17
C9orf85-202ENST00000377027 PIAS4Q8N2W9 510 aaPredicted RBP21.93■■□□□ 1.1
C9orf85-202ENST00000377027 CCDC180Q9P1Z9 1646 aa21.77■■□□□ 1.08
C9orf85-202ENST00000377027 ABCC9O60706 1549 aa21.7■■□□□ 1.07
C9orf85-202ENST00000377027 MSH5O43196 834 aa21.48■■□□□ 1.03
C9orf85-202ENST00000377027 RB1CC1Q8TDY2 1594 aa20.65■□□□□ 0.9
C9orf85-202ENST00000377027 PPP4R3CPQ6ZMV5 832 aa20.57■□□□□ 0.88
C9orf85-202ENST00000377027 NACADO15069 1562 aa20.51■□□□□ 0.87
C9orf85-202ENST00000377027 SCAF1Q9H7N4 1312 aaKnown RBP20.43■□□□□ 0.86
C9orf85-202ENST00000377027 DNAJC5BQ9UF47 199 aa20.39■□□□□ 0.85
C9orf85-202ENST00000377027 UNC13AQ9UPW8 1703 aa20.38■□□□□ 0.85
C9orf85-202ENST00000377027 MAPK8IP2Q13387 824 aaPredicted RBP20.3■□□□□ 0.84
C9orf85-202ENST00000377027 MYO15BQ96JP2 1530 aa20.25■□□□□ 0.83
C9orf85-202ENST00000377027 DCAF8L2P0C7V8 631 aa20.24■□□□□ 0.83
C9orf85-202ENST00000377027 BICRAQ9NZM4 1560 aa20.18■□□□□ 0.82
C9orf85-202ENST00000377027 PABPN1Q86U42 306 aaKnown RBP eCLIP20.16■□□□□ 0.82
C9orf85-202ENST00000377027 ZCCHC6Q5VYS8 1495 aaKnown RBP20.12■□□□□ 0.81
C9orf85-202ENST00000377027 KCNA4P22459 653 aa20.02■□□□□ 0.8
C9orf85-202ENST00000377027 DMRT2Q9Y5R5 561 aa20.02■□□□□ 0.8
C9orf85-202ENST00000377027 DCAF1Q9Y4B6 1507 aa20.02■□□□□ 0.79
C9orf85-202ENST00000377027 CNKSR2Q8WXI2 1034 aa20■□□□□ 0.79
C9orf85-202ENST00000377027 NCBP3Q53F19 620 aaKnown RBP19.99■□□□□ 0.79
C9orf85-202ENST00000377027 SCRIBQ14160 1630 aa19.84■□□□□ 0.77
C9orf85-202ENST00000377027 SHROOM4Q9ULL8 1493 aa19.77■□□□□ 0.76
C9orf85-202ENST00000377027 NPM3O75607 178 aaKnown RBP19.72■□□□□ 0.75
C9orf85-202ENST00000377027 POTEDQ86YR6 584 aa19.69■□□□□ 0.74
C9orf85-202ENST00000377027 CC2D2AQ9P2K1 1620 aa19.65■□□□□ 0.74
C9orf85-202ENST00000377027 RNF216Q9NWF9 866 aaPredicted RBP19.63■□□□□ 0.73
C9orf85-202ENST00000377027 EIF4G1Q04637 1599 aaKnown RBP19.61■□□□□ 0.73
C9orf85-202ENST00000377027 HOXD11P31277 338 aaPredicted RBP19.58■□□□□ 0.72
C9orf85-202ENST00000377027 CECR2Q9BXF3 1484 aa19.53■□□□□ 0.72
C9orf85-202ENST00000377027 DCAF8L1A6NGE4 600 aa19.11■□□□□ 0.65
C9orf85-202ENST00000377027 SLC4A1APQ9BWU0 796 aaKnown RBP19.04■□□□□ 0.64
C9orf85-202ENST00000377027 SMARCA4P51532 1647 aa18.94■□□□□ 0.62
C9orf85-202ENST00000377027 NCAPD3P42695 1498 aa18.94■□□□□ 0.62
C9orf85-202ENST00000377027 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
C9orf85-202ENST00000377027 HMGXB3Q12766 1538 aa18.84■□□□□ 0.61
C9orf85-202ENST00000377027 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
C9orf85-202ENST00000377027 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.6
C9orf85-202ENST00000377027 PEG3Q9GZU2 1588 aa18.76■□□□□ 0.59
C9orf85-202ENST00000377027 MROH2BQ7Z745 1585 aa18.72■□□□□ 0.59
C9orf85-202ENST00000377027 NESP48681 1621 aa18.71■□□□□ 0.58
C9orf85-202ENST00000377027 BAZ1BQ9UIG0 1483 aaKnown RBP18.68■□□□□ 0.58
C9orf85-202ENST00000377027 CUX2O14529 1486 aa18.66■□□□□ 0.58
C9orf85-202ENST00000377027 ERCC6Q03468 1493 aa18.65■□□□□ 0.58
C9orf85-202ENST00000377027 SLC4A2P04920 1241 aa18.65■□□□□ 0.58
C9orf85-202ENST00000377027 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.63■□□□□ 0.572e-6■□□□□ 8.5
C9orf85-202ENST00000377027 DNAJC5Q9H3Z4 198 aa18.59■□□□□ 0.57
C9orf85-202ENST00000377027 THOC2Q8NI27 1593 aaKnown RBP18.56■□□□□ 0.56
C9orf85-202ENST00000377027 LAMC3Q9Y6N6 1575 aa18.52■□□□□ 0.56
C9orf85-202ENST00000377027 KIF21AQ7Z4S6 1674 aa18.52■□□□□ 0.56
C9orf85-202ENST00000377027 WIZO95785 1651 aa18.51■□□□□ 0.55
C9orf85-202ENST00000377027 ZBTB22O15209 634 aa18.43■□□□□ 0.54
C9orf85-202ENST00000377027 RNF39Q9H2S5 420 aa18.43■□□□□ 0.54
C9orf85-202ENST00000377027 FOXD4L1Q9NU39 408 aa18.42■□□□□ 0.54
C9orf85-202ENST00000377027 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
C9orf85-202ENST00000377027 U3KPZ7 1027 aaPredicted RBP18.35■□□□□ 0.53
C9orf85-202ENST00000377027 CADPSQ9ULU8 1353 aa18.32■□□□□ 0.52
C9orf85-202ENST00000377027 PDS5BQ9NTI5 1447 aa18.32■□□□□ 0.52
C9orf85-202ENST00000377027 RSF1Q96T23 1441 aaPredicted RBP18.29■□□□□ 0.52
C9orf85-202ENST00000377027 CSRNP3Q8WYN3 585 aa18.27■□□□□ 0.52
C9orf85-202ENST00000377027 WDR62O43379 1518 aa18.25■□□□□ 0.51
C9orf85-202ENST00000377027 MRC2Q9UBG0 1479 aa18.24■□□□□ 0.51
C9orf85-202ENST00000377027 TOP2AP11388 1531 aaKnown RBP18.23■□□□□ 0.51
C9orf85-202ENST00000377027 MYCNP04198 464 aaPredicted RBP18.21■□□□□ 0.51
C9orf85-202ENST00000377027 C1QBPQ07021 282 aaKnown RBP18.2■□□□□ 0.5
C9orf85-202ENST00000377027 CFTRP13569 1480 aa18.17■□□□□ 0.5
C9orf85-202ENST00000377027 FANCD2Q9BXW9 1451 aa18.15■□□□□ 0.5
C9orf85-202ENST00000377027 CEP164Q9UPV0 1460 aa18.15■□□□□ 0.5
C9orf85-202ENST00000377027 PRDM2Q13029 1718 aa18.09■□□□□ 0.49
C9orf85-202ENST00000377027 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.07■□□□□ 0.48
C9orf85-202ENST00000377027 HNRNPUL2Q1KMD3 747 aaKnown RBP18.07■□□□□ 0.48
C9orf85-202ENST00000377027 URB2Q14146 1524 aaKnown RBP18.07■□□□□ 0.48
C9orf85-202ENST00000377027 SAMD1Q6SPF0 538 aaPredicted RBP18.01■□□□□ 0.47
C9orf85-202ENST00000377027 CCDC88BA6NC98 1476 aa18.01■□□□□ 0.47
C9orf85-202ENST00000377027 CACNB1Q02641 598 aaPredicted RBP17.96■□□□□ 0.47
C9orf85-202ENST00000377027 APLP2Q06481 763 aa17.88■□□□□ 0.45
C9orf85-202ENST00000377027 SPINK5Q9NQ38 1064 aaPredicted RBP17.85■□□□□ 0.45
C9orf85-202ENST00000377027 TOPBP1Q92547 1522 aa17.84■□□□□ 0.45
C9orf85-202ENST00000377027 ZNF608Q9ULD9 1512 aaPredicted RBP17.84■□□□□ 0.45
C9orf85-202ENST00000377027 ATXN8OSP0DMR3 200 aa17.81■□□□□ 0.44
C9orf85-202ENST00000377027 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
C9orf85-202ENST00000377027 DNMBPQ6XZF7 1577 aa17.78■□□□□ 0.44
C9orf85-202ENST00000377027 EIF4G3O43432 1585 aaKnown RBP17.76■□□□□ 0.43
C9orf85-202ENST00000377027 CAPN15O75808 1086 aa17.76■□□□□ 0.43
C9orf85-202ENST00000377027 TRIM41Q8WV44 630 aa17.75■□□□□ 0.43
C9orf85-202ENST00000377027 ATF5Q9Y2D1 282 aaPredicted RBP17.75■□□□□ 0.43
C9orf85-202ENST00000377027 TARBP1Q13395 1621 aaKnown RBP17.75■□□□□ 0.43
C9orf85-202ENST00000377027 OSCARQ8IYS5 282 aa17.7■□□□□ 0.42
C9orf85-202ENST00000377027 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
C9orf85-202ENST00000377027 RIMBP3CA6NJZ7 1639 aa17.67■□□□□ 0.42
C9orf85-202ENST00000377027 RIMBP3BA6NNM3 1639 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms