RNA–Protein interactions for RNA: ENST00000376909.6

SSX9-201, Transcript of Protein SSX9, humanhuman

BASIC

Gene SSX9, Length 591 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9-201ENST00000376909 AEBP2Q6ZN18 517 aaPredicted RBP20.74■□□□□ 0.91
SSX9-201ENST00000376909 CHIC1Q5VXU3 224 aa20.13■□□□□ 0.81
SSX9-201ENST00000376909 NISCHQ9Y2I1 1504 aa17.85■□□□□ 0.45
SSX9-201ENST00000376909 SENP3Q9H4L4 574 aaPredicted RBP17.81■□□□□ 0.44
SSX9-201ENST00000376909 PHF23Q9BUL5 403 aaPredicted RBP17.59■□□□□ 0.41
SSX9-201ENST00000376909 FOXD1Q16676 465 aa16.45■□□□□ 0.22
SSX9-201ENST00000376909 PLPPR3Q6T4P5 718 aa16.29■□□□□ 0.2
SSX9-201ENST00000376909 CCDC180Q9P1Z9 1646 aa15.6■□□□□ 0.09
SSX9-201ENST00000376909 PPP6R1Q9UPN7 881 aa15.58■□□□□ 0.08
SSX9-201ENST00000376909 ADRA2BP18089 450 aa15.56■□□□□ 0.08
SSX9-201ENST00000376909 PIAS4Q8N2W9 510 aaPredicted RBP15.47■□□□□ 0.07
SSX9-201ENST00000376909 MSH5O43196 834 aa15.4■□□□□ 0.06
SSX9-201ENST00000376909 ZCCHC6Q5VYS8 1495 aaKnown RBP14.96□□□□□ -0.01
SSX9-201ENST00000376909 ABCC9O60706 1549 aa14.92□□□□□ -0.02
SSX9-201ENST00000376909 DCAF8L2P0C7V8 631 aa14.83□□□□□ -0.04
SSX9-201ENST00000376909 DCAF1Q9Y4B6 1507 aa14.77□□□□□ -0.04
SSX9-201ENST00000376909 MYO15BQ96JP2 1530 aa14.66□□□□□ -0.06
SSX9-201ENST00000376909 NACADO15069 1562 aa14.61□□□□□ -0.07
SSX9-201ENST00000376909 RB1CC1Q8TDY2 1594 aa14.51□□□□□ -0.09
SSX9-201ENST00000376909 SHROOM4Q9ULL8 1493 aa14.45□□□□□ -0.1
SSX9-201ENST00000376909 SCAF1Q9H7N4 1312 aaKnown RBP14.44□□□□□ -0.1
SSX9-201ENST00000376909 POTEDQ86YR6 584 aa14.33□□□□□ -0.12
SSX9-201ENST00000376909 SCRIBQ14160 1630 aa14.33□□□□□ -0.12
SSX9-201ENST00000376909 PPP4R3CPQ6ZMV5 832 aa14.26□□□□□ -0.13
SSX9-201ENST00000376909 MAPK8IP2Q13387 824 aaPredicted RBP14.16□□□□□ -0.14
SSX9-201ENST00000376909 DMRT2Q9Y5R5 561 aa14.14□□□□□ -0.15
SSX9-201ENST00000376909 UNC13AQ9UPW8 1703 aa14.1□□□□□ -0.15
SSX9-201ENST00000376909 PABPN1Q86U42 306 aaKnown RBP eCLIP14.07□□□□□ -0.16
SSX9-201ENST00000376909 BICRAQ9NZM4 1560 aa14.05□□□□□ -0.16
SSX9-201ENST00000376909 CNKSR2Q8WXI2 1034 aa13.98□□□□□ -0.17
SSX9-201ENST00000376909 NCBP3Q53F19 620 aaKnown RBP13.93□□□□□ -0.18
SSX9-201ENST00000376909 CECR2Q9BXF3 1484 aa13.87□□□□□ -0.19
SSX9-201ENST00000376909 SUPT5HO00267 1087 aaKnown RBP13.86□□□□□ -0.19
SSX9-201ENST00000376909 RSF1Q96T23 1441 aaPredicted RBP13.8□□□□□ -0.2
SSX9-201ENST00000376909 BAZ1AQ9NRL2 1556 aaPredicted RBP13.79□□□□□ -0.2
SSX9-201ENST00000376909 HOXD11P31277 338 aaPredicted RBP13.77□□□□□ -0.21
SSX9-201ENST00000376909 MROH2BQ7Z745 1585 aa13.77□□□□□ -0.21
SSX9-201ENST00000376909 RNF216Q9NWF9 866 aaPredicted RBP13.77□□□□□ -0.21
SSX9-201ENST00000376909 SMARCA4P51532 1647 aa13.73□□□□□ -0.21
SSX9-201ENST00000376909 EIF4G1Q04637 1599 aaKnown RBP13.65□□□□□ -0.22
SSX9-201ENST00000376909 WIZO95785 1651 aa13.62□□□□□ -0.23
SSX9-201ENST00000376909 NPM3O75607 178 aaKnown RBP13.59□□□□□ -0.23
SSX9-201ENST00000376909 KCNA4P22459 653 aa13.58□□□□□ -0.24
SSX9-201ENST00000376909 ATAD2BQ9ULI0 1458 aa13.58□□□□□ -0.24
SSX9-201ENST00000376909 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.24
SSX9-201ENST00000376909 SMARCA2P51531 1590 aa13.57□□□□□ -0.24
SSX9-201ENST00000376909 TOP2AP11388 1531 aaKnown RBP13.52□□□□□ -0.25
SSX9-201ENST00000376909 NCAPD3P42695 1498 aa13.49□□□□□ -0.25
SSX9-201ENST00000376909 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
SSX9-201ENST00000376909 CC2D2AQ9P2K1 1620 aa13.48□□□□□ -0.25
SSX9-201ENST00000376909 DCAF8L1A6NGE4 600 aa13.46□□□□□ -0.25
SSX9-201ENST00000376909 HMGXB3Q12766 1538 aa13.44□□□□□ -0.26
SSX9-201ENST00000376909 DNAJC5BQ9UF47 199 aa13.42□□□□□ -0.26
SSX9-201ENST00000376909 CCDC88BA6NC98 1476 aa13.38□□□□□ -0.27
SSX9-201ENST00000376909 CADPSQ9ULU8 1353 aa13.15□□□□□ -0.3
SSX9-201ENST00000376909 CFTRP13569 1480 aa13.15□□□□□ -0.3
SSX9-201ENST00000376909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.1□□□□□ -0.31
SSX9-201ENST00000376909 RNF39Q9H2S5 420 aa13.1□□□□□ -0.31
SSX9-201ENST00000376909 TRIM41Q8WV44 630 aa13.06□□□□□ -0.32
SSX9-201ENST00000376909 LAMC3Q9Y6N6 1575 aa13.03□□□□□ -0.32
SSX9-201ENST00000376909 NESP48681 1621 aa13.03□□□□□ -0.32
SSX9-201ENST00000376909 C1QBPQ07021 282 aaKnown RBP13.01□□□□□ -0.33
SSX9-201ENST00000376909 ABCC8Q09428 1581 aa13.01□□□□□ -0.33
SSX9-201ENST00000376909 WRNQ14191 1432 aaPredicted RBP eCLIP13□□□□□ -0.33
SSX9-201ENST00000376909 FANCD2Q9BXW9 1451 aa12.98□□□□□ -0.33
SSX9-201ENST00000376909 PDS5BQ9NTI5 1447 aa12.98□□□□□ -0.33
SSX9-201ENST00000376909 PRDM2Q13029 1718 aa12.96□□□□□ -0.33
SSX9-201ENST00000376909 SLC4A1APQ9BWU0 796 aaKnown RBP12.95□□□□□ -0.34
SSX9-201ENST00000376909 CACNB1Q02641 598 aaPredicted RBP12.93□□□□□ -0.34
SSX9-201ENST00000376909 CEP164Q9UPV0 1460 aa12.92□□□□□ -0.34
SSX9-201ENST00000376909 SYNJ1O43426 1573 aa12.9□□□□□ -0.34
SSX9-201ENST00000376909 CUX1P39880 1505 aa12.89□□□□□ -0.35
SSX9-201ENST00000376909 TOP2BQ02880 1626 aa12.88□□□□□ -0.35
SSX9-201ENST00000376909 SLC4A2P04920 1241 aa12.87□□□□□ -0.35
SSX9-201ENST00000376909 BIVM-ERCC5R4GMW8 1640 aa12.85□□□□□ -0.35
SSX9-201ENST00000376909 ERCC6Q03468 1493 aa12.84□□□□□ -0.35
SSX9-201ENST00000376909 KIF21AQ7Z4S6 1674 aa12.83□□□□□ -0.36
SSX9-201ENST00000376909 DNMBPQ6XZF7 1577 aa12.82□□□□□ -0.36
SSX9-201ENST00000376909 URB2Q14146 1524 aaKnown RBP12.82□□□□□ -0.36
SSX9-201ENST00000376909 TOPBP1Q92547 1522 aa12.82□□□□□ -0.36
SSX9-201ENST00000376909 MRC2Q9UBG0 1479 aa12.8□□□□□ -0.36
SSX9-201ENST00000376909 FAM9AQ8IZU1 332 aaPredicted RBP12.8□□□□□ -0.36
SSX9-201ENST00000376909 U3KPZ7 1027 aaPredicted RBP12.8□□□□□ -0.36
SSX9-201ENST00000376909 SOGA1O94964 1423 aa12.78□□□□□ -0.36
SSX9-201ENST00000376909 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
SSX9-201ENST00000376909 EEA1Q15075 1411 aa12.76□□□□□ -0.37
SSX9-201ENST00000376909 POLA1P09884 1462 aaPredicted RBP12.74□□□□□ -0.37
SSX9-201ENST00000376909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.74□□□□□ -0.37
SSX9-201ENST00000376909 HNRNPUL2Q1KMD3 747 aaKnown RBP12.74□□□□□ -0.37
SSX9-201ENST00000376909 WDR62O43379 1518 aa12.72□□□□□ -0.37
SSX9-201ENST00000376909 RUSC2Q8N2Y8 1516 aa12.72□□□□□ -0.37
SSX9-201ENST00000376909 CSRNP3Q8WYN3 585 aa12.71□□□□□ -0.37
SSX9-201ENST00000376909 RAD54L2Q9Y4B4 1467 aa12.71□□□□□ -0.38
SSX9-201ENST00000376909 KIF27Q86VH2 1401 aa12.71□□□□□ -0.38
SSX9-201ENST00000376909 APLP2Q06481 763 aa12.7□□□□□ -0.38
SSX9-201ENST00000376909 CUX2O14529 1486 aa12.69□□□□□ -0.38
SSX9-201ENST00000376909 THOC2Q8NI27 1593 aaKnown RBP12.69□□□□□ -0.38
SSX9-201ENST00000376909 ABCA10Q8WWZ4 1543 aa12.67□□□□□ -0.38
SSX9-201ENST00000376909 LOC105371045A0A1W2PR82 267 aa12.67□□□□□ -0.38
SSX9-201ENST00000376909 FOXD4L1Q9NU39 408 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms