RNA–Protein interactions for RNA: ENST00000358730.6

RFX3-202, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 2,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-202ENST00000358730 NISCHQ9Y2I1 1504 aa17.87■□□□□ 0.45
RFX3-202ENST00000358730 CCDC180Q9P1Z9 1646 aa15.24■□□□□ 0.03
RFX3-202ENST00000358730 SHROOM4Q9ULL8 1493 aa15.22■□□□□ 0.03
RFX3-202ENST00000358730 ZCCHC6Q5VYS8 1495 aaKnown RBP15.13■□□□□ 0.01
RFX3-202ENST00000358730 SUPT5HO00267 1087 aaKnown RBP14.91□□□□□ -0.02
RFX3-202ENST00000358730 DCAF8L2P0C7V8 631 aa14.77□□□□□ -0.04
RFX3-202ENST00000358730 DCAF1Q9Y4B6 1507 aa14.67□□□□□ -0.06
RFX3-202ENST00000358730 CHIC1Q5VXU3 224 aa14.48□□□□□ -0.09
RFX3-202ENST00000358730 MYO15BQ96JP2 1530 aa14.47□□□□□ -0.09
RFX3-202ENST00000358730 ABCC9O60706 1549 aa14.31□□□□□ -0.12
RFX3-202ENST00000358730 SCRIBQ14160 1630 aa14.27□□□□□ -0.12
RFX3-202ENST00000358730 RSF1Q96T23 1441 aaPredicted RBP14.13□□□□□ -0.15
RFX3-202ENST00000358730 NACADO15069 1562 aa14.06□□□□□ -0.16
RFX3-202ENST00000358730 HRCP23327 699 aa14.06□□□□□ -0.16
RFX3-202ENST00000358730 PCGF6Q9BYE7 350 aa14.05□□□□□ -0.16
RFX3-202ENST00000358730 LOC105371045A0A1W2PR82 267 aa14.04□□□□□ -0.16
RFX3-202ENST00000358730 RB1CC1Q8TDY2 1594 aa14.03□□□□□ -0.16
RFX3-202ENST00000358730 CECR2Q9BXF3 1484 aa13.92□□□□□ -0.18
RFX3-202ENST00000358730 TRIM41Q8WV44 630 aa13.89□□□□□ -0.19
RFX3-202ENST00000358730 MROH2BQ7Z745 1585 aa13.89□□□□□ -0.19
RFX3-202ENST00000358730 WIZO95785 1651 aa13.84□□□□□ -0.19
RFX3-202ENST00000358730 TRIM26Q12899 539 aaPredicted RBP13.78□□□□□ -0.2
RFX3-202ENST00000358730 FAM9AQ8IZU1 332 aaPredicted RBP13.77□□□□□ -0.2
RFX3-202ENST00000358730 BAZ1AQ9NRL2 1556 aaPredicted RBP13.77□□□□□ -0.21
RFX3-202ENST00000358730 PPARGC1BQ86YN6 1023 aaKnown RBP13.75□□□□□ -0.21
RFX3-202ENST00000358730 EIF4G1Q04637 1599 aaKnown RBP13.67□□□□□ -0.22
RFX3-202ENST00000358730 UNC13AQ9UPW8 1703 aa13.66□□□□□ -0.22
RFX3-202ENST00000358730 EHMT2Q96KQ7 1210 aa13.65□□□□□ -0.22
RFX3-202ENST00000358730 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
RFX3-202ENST00000358730 TOP2AP11388 1531 aaKnown RBP13.63□□□□□ -0.23
RFX3-202ENST00000358730 SMARCA2P51531 1590 aa13.54□□□□□ -0.24
RFX3-202ENST00000358730 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
RFX3-202ENST00000358730 ABCC8Q09428 1581 aa13.52□□□□□ -0.24
RFX3-202ENST00000358730 ZEB1P37275 1124 aaPredicted RBP13.49□□□□□ -0.25
RFX3-202ENST00000358730 BICRAQ9NZM4 1560 aa13.45□□□□□ -0.26
RFX3-202ENST00000358730 PABPN1Q86U42 306 aaKnown RBP eCLIP13.42□□□□□ -0.26
RFX3-202ENST00000358730 SOGA1O94964 1423 aa13.37□□□□□ -0.27
RFX3-202ENST00000358730 PEG3Q9GZU2 1588 aa13.36□□□□□ -0.27
RFX3-202ENST00000358730 CEP162Q5TB80 1403 aa13.33□□□□□ -0.28
RFX3-202ENST00000358730 EEA1Q15075 1411 aa13.33□□□□□ -0.28
RFX3-202ENST00000358730 WRNQ14191 1432 aaPredicted RBP eCLIP13.31□□□□□ -0.28
RFX3-202ENST00000358730 RUSC2Q8N2Y8 1516 aa13.29□□□□□ -0.28
RFX3-202ENST00000358730 TNIKQ9UKE5 1360 aa13.29□□□□□ -0.28
RFX3-202ENST00000358730 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.28
RFX3-202ENST00000358730 ATAD2BQ9ULI0 1458 aa13.25□□□□□ -0.29
RFX3-202ENST00000358730 GOLGA3Q08378 1498 aa13.25□□□□□ -0.29
RFX3-202ENST00000358730 BAZ1BQ9UIG0 1483 aaKnown RBP13.24□□□□□ -0.29
RFX3-202ENST00000358730 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
RFX3-202ENST00000358730 UBTFP17480 764 aaKnown RBP13.24□□□□□ -0.29
RFX3-202ENST00000358730 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.23□□□□□ -0.29
RFX3-202ENST00000358730 TTBK1Q5TCY1 1321 aaPredicted RBP13.23□□□□□ -0.29
RFX3-202ENST00000358730 CCER1Q8TC90 406 aaPredicted RBP13.21□□□□□ -0.29
RFX3-202ENST00000358730 CEP164Q9UPV0 1460 aa13.17□□□□□ -0.3
RFX3-202ENST00000358730 KIF21BO75037 1637 aa13.17□□□□□ -0.3
RFX3-202ENST00000358730 CLIP1P30622 1438 aa13.08□□□□□ -0.31
RFX3-202ENST00000358730 TOP2BQ02880 1626 aa13.08□□□□□ -0.32
RFX3-202ENST00000358730 RAPGEF2Q9Y4G8 1499 aa13.06□□□□□ -0.32
RFX3-202ENST00000358730 BIVM-ERCC5R4GMW8 1640 aa13.04□□□□□ -0.32
RFX3-202ENST00000358730 VPS8Q8N3P4 1428 aa13.03□□□□□ -0.32
RFX3-202ENST00000358730 HMGXB3Q12766 1538 aa13.02□□□□□ -0.32
RFX3-202ENST00000358730 AEBP2Q6ZN18 517 aaPredicted RBP13.01□□□□□ -0.33
RFX3-202ENST00000358730 NCAPD3P42695 1498 aa12.99□□□□□ -0.33
RFX3-202ENST00000358730 RANGAP1P46060 587 aaPredicted RBP12.97□□□□□ -0.33
RFX3-202ENST00000358730 APLP2Q06481 763 aa12.96□□□□□ -0.34
RFX3-202ENST00000358730 ERICH3Q5RHP9 1530 aa12.95□□□□□ -0.34
RFX3-202ENST00000358730 DIEXFQ68CQ4 756 aaKnown RBP12.94□□□□□ -0.34
RFX3-202ENST00000358730 CUX1P39880 1505 aa12.94□□□□□ -0.34
RFX3-202ENST00000358730 HNRNPUL2Q1KMD3 747 aaKnown RBP12.94□□□□□ -0.34
RFX3-202ENST00000358730 SCAF1Q9H7N4 1312 aaKnown RBP12.94□□□□□ -0.34
RFX3-202ENST00000358730 PRXQ9BXM0 1461 aa12.93□□□□□ -0.34
RFX3-202ENST00000358730 CFTRP13569 1480 aa12.9□□□□□ -0.35
RFX3-202ENST00000358730 KIF27Q86VH2 1401 aa12.88□□□□□ -0.35
RFX3-202ENST00000358730 ARAP1Q96P48 1450 aa12.88□□□□□ -0.35
RFX3-202ENST00000358730 PRDM2Q13029 1718 aa12.86□□□□□ -0.35
RFX3-202ENST00000358730 ZNF316A6NFI3 1004 aaPredicted RBP12.84□□□□□ -0.35
RFX3-202ENST00000358730 ACIN1Q9UKV3 1341 aaKnown RBP12.83□□□□□ -0.36
RFX3-202ENST00000358730 NEUROD1Q13562 356 aa12.81□□□□□ -0.36
RFX3-202ENST00000358730 CENPBP07199 599 aaPredicted RBP12.78□□□□□ -0.36
RFX3-202ENST00000358730 KANK4Q5T7N3 995 aaPredicted RBP12.76□□□□□ -0.37
RFX3-202ENST00000358730 CUX2O14529 1486 aa12.76□□□□□ -0.37
RFX3-202ENST00000358730 ARHGAP35Q9NRY4 1499 aa12.76□□□□□ -0.37
RFX3-202ENST00000358730 CADPSQ9ULU8 1353 aa12.74□□□□□ -0.37
RFX3-202ENST00000358730 RRBP1Q9P2E9 1410 aaKnown RBP12.72□□□□□ -0.37
RFX3-202ENST00000358730 FGD5Q6ZNL6 1462 aa12.71□□□□□ -0.37
RFX3-202ENST00000358730 DHX57Q6P158 1386 aaKnown RBP12.7□□□□□ -0.38
RFX3-202ENST00000358730 IGF1RP08069 1367 aa12.7□□□□□ -0.38
RFX3-202ENST00000358730 CLSPNQ9HAW4 1339 aa12.69□□□□□ -0.38
RFX3-202ENST00000358730 CC2D2AQ9P2K1 1620 aa12.68□□□□□ -0.38
RFX3-202ENST00000358730 GTF3C3Q9Y5Q9 886 aa12.68□□□□□ -0.38
RFX3-202ENST00000358730 PELP1Q8IZL8 1130 aaKnown RBP12.68□□□□□ -0.38
RFX3-202ENST00000358730 CCNB3Q8WWL7 1395 aa12.67□□□□□ -0.38
RFX3-202ENST00000358730 CARMIL1Q5VZK9 1371 aa12.67□□□□□ -0.38
RFX3-202ENST00000358730 YTHDC1Q96MU7 727 aaKnown RBP12.65□□□□□ -0.38
RFX3-202ENST00000358730 MIER1Q8N108 512 aa12.65□□□□□ -0.38
RFX3-202ENST00000358730 TIAM1Q13009 1591 aa12.64□□□□□ -0.39
RFX3-202ENST00000358730 FANCD2Q9BXW9 1451 aa12.64□□□□□ -0.39
RFX3-202ENST00000358730 MAP3K1Q13233 1512 aa12.61□□□□□ -0.39
RFX3-202ENST00000358730 ITGAEP38570 1179 aa12.6□□□□□ -0.39
RFX3-202ENST00000358730 DNMBPQ6XZF7 1577 aa12.6□□□□□ -0.39
RFX3-202ENST00000358730 LRRC9Q6ZRR7 1453 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms