RNA–Protein interactions for RNA: ENST00000354537.1

CAPN9-202, Transcript of calpain 9, humanhuman

TSL 1 (best) BASIC

Gene CAPN9, Length 2,484 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN9-202ENST00000354537 NISCHQ9Y2I1 1504 aa22.94■■□□□ 1.26
CAPN9-202ENST00000354537 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
CAPN9-202ENST00000354537 SHROOM4Q9ULL8 1493 aa19.46■□□□□ 0.71
CAPN9-202ENST00000354537 CCDC180Q9P1Z9 1646 aa19.46■□□□□ 0.71
CAPN9-202ENST00000354537 SUPT5HO00267 1087 aaKnown RBP19.28■□□□□ 0.68
CAPN9-202ENST00000354537 CHIC1Q5VXU3 224 aa19.05■□□□□ 0.64
CAPN9-202ENST00000354537 HRCP23327 699 aa19.01■□□□□ 0.63
CAPN9-202ENST00000354537 DCAF1Q9Y4B6 1507 aa18.98■□□□□ 0.63
CAPN9-202ENST00000354537 MYO15BQ96JP2 1530 aa18.97■□□□□ 0.63
CAPN9-202ENST00000354537 PCGF6Q9BYE7 350 aa18.64■□□□□ 0.58
CAPN9-202ENST00000354537 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
CAPN9-202ENST00000354537 ABCC9O60706 1549 aa18.43■□□□□ 0.54
CAPN9-202ENST00000354537 TRIM26Q12899 539 aaPredicted RBP18.4■□□□□ 0.54
CAPN9-202ENST00000354537 LOC105371045A0A1W2PR82 267 aa18.34■□□□□ 0.53
CAPN9-202ENST00000354537 PPARGC1BQ86YN6 1023 aaKnown RBP18.33■□□□□ 0.52
CAPN9-202ENST00000354537 ZEB1P37275 1124 aaPredicted RBP18.26■□□□□ 0.51
CAPN9-202ENST00000354537 RSF1Q96T23 1441 aaPredicted RBP18.23■□□□□ 0.51
CAPN9-202ENST00000354537 RB1CC1Q8TDY2 1594 aa18.14■□□□□ 0.5
CAPN9-202ENST00000354537 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
CAPN9-202ENST00000354537 TRIM41Q8WV44 630 aa18.06■□□□□ 0.48
CAPN9-202ENST00000354537 PELP1Q8IZL8 1130 aaKnown RBP17.91■□□□□ 0.46
CAPN9-202ENST00000354537 NACADO15069 1562 aa17.91■□□□□ 0.46
CAPN9-202ENST00000354537 MROH2BQ7Z745 1585 aa17.77■□□□□ 0.43
CAPN9-202ENST00000354537 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
CAPN9-202ENST00000354537 FAM9AQ8IZU1 332 aaPredicted RBP17.74■□□□□ 0.43
CAPN9-202ENST00000354537 BAZ1AQ9NRL2 1556 aaPredicted RBP17.7■□□□□ 0.42
CAPN9-202ENST00000354537 EIF4G1Q04637 1599 aaKnown RBP17.68■□□□□ 0.42
CAPN9-202ENST00000354537 WIZO95785 1651 aa17.66■□□□□ 0.42
CAPN9-202ENST00000354537 SCAF1Q9H7N4 1312 aaKnown RBP17.61■□□□□ 0.41
CAPN9-202ENST00000354537 WRNQ14191 1432 aaPredicted RBP eCLIP17.58■□□□□ 0.41
CAPN9-202ENST00000354537 TOP2AP11388 1531 aaKnown RBP17.51■□□□□ 0.39
CAPN9-202ENST00000354537 CCER1Q8TC90 406 aaPredicted RBP17.47■□□□□ 0.39
CAPN9-202ENST00000354537 EEA1Q15075 1411 aa17.46■□□□□ 0.38
CAPN9-202ENST00000354537 ACIN1Q9UKV3 1341 aaKnown RBP17.44■□□□□ 0.38
CAPN9-202ENST00000354537 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
CAPN9-202ENST00000354537 TNIKQ9UKE5 1360 aa17.43■□□□□ 0.38
CAPN9-202ENST00000354537 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.41■□□□□ 0.38
CAPN9-202ENST00000354537 SMARCA4P51532 1647 aa17.39■□□□□ 0.37
CAPN9-202ENST00000354537 SMARCA2P51531 1590 aa17.38■□□□□ 0.37
CAPN9-202ENST00000354537 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
CAPN9-202ENST00000354537 CCDC88BA6NC98 1476 aa17.38■□□□□ 0.37
CAPN9-202ENST00000354537 CENPBP07199 599 aaPredicted RBP17.35■□□□□ 0.37
CAPN9-202ENST00000354537 DIEXFQ68CQ4 756 aaKnown RBP17.33■□□□□ 0.37
CAPN9-202ENST00000354537 ABCC8Q09428 1581 aa17.32■□□□□ 0.36
CAPN9-202ENST00000354537 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
CAPN9-202ENST00000354537 CSRNP3Q8WYN3 585 aa17.26■□□□□ 0.35
CAPN9-202ENST00000354537 SOGA1O94964 1423 aa17.25■□□□□ 0.35
CAPN9-202ENST00000354537 GOLGA3Q08378 1498 aa17.24■□□□□ 0.35
CAPN9-202ENST00000354537 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
CAPN9-202ENST00000354537 MYT1Q01538 1121 aa17.18■□□□□ 0.34
CAPN9-202ENST00000354537 GTF3C3Q9Y5Q9 886 aa17.15■□□□□ 0.34
CAPN9-202ENST00000354537 PEG3Q9GZU2 1588 aa17.15■□□□□ 0.34
CAPN9-202ENST00000354537 UNC13AQ9UPW8 1703 aa17.14■□□□□ 0.33
CAPN9-202ENST00000354537 KIF21BO75037 1637 aa17.14■□□□□ 0.33
CAPN9-202ENST00000354537 CEP164Q9UPV0 1460 aa17.13■□□□□ 0.33
CAPN9-202ENST00000354537 RUSC2Q8N2Y8 1516 aa17.12■□□□□ 0.33
CAPN9-202ENST00000354537 UBTFP17480 764 aaKnown RBP17.11■□□□□ 0.33
CAPN9-202ENST00000354537 BAZ1BQ9UIG0 1483 aaKnown RBP17.07■□□□□ 0.32
CAPN9-202ENST00000354537 VPS8Q8N3P4 1428 aa17.02■□□□□ 0.31
CAPN9-202ENST00000354537 CLIP1P30622 1438 aa17■□□□□ 0.31
CAPN9-202ENST00000354537 TTBK1Q5TCY1 1321 aaPredicted RBP16.98■□□□□ 0.31
CAPN9-202ENST00000354537 SYNJ1O43426 1573 aa16.98■□□□□ 0.31
CAPN9-202ENST00000354537 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
CAPN9-202ENST00000354537 CLSPNQ9HAW4 1339 aa16.95■□□□□ 0.3
CAPN9-202ENST00000354537 APLP2Q06481 763 aa16.89■□□□□ 0.29
CAPN9-202ENST00000354537 MIER1Q8N108 512 aa16.87■□□□□ 0.29
CAPN9-202ENST00000354537 ATAD2BQ9ULI0 1458 aa16.87■□□□□ 0.29
CAPN9-202ENST00000354537 HNRNPUL2Q1KMD3 747 aaKnown RBP16.86■□□□□ 0.29
CAPN9-202ENST00000354537 RAPGEF2Q9Y4G8 1499 aa16.85■□□□□ 0.29
CAPN9-202ENST00000354537 ERICH3Q5RHP9 1530 aa16.84■□□□□ 0.29
CAPN9-202ENST00000354537 TOP2BQ02880 1626 aa16.83■□□□□ 0.29
CAPN9-202ENST00000354537 BIVM-ERCC5R4GMW8 1640 aa16.79■□□□□ 0.28
CAPN9-202ENST00000354537 YTHDC1Q96MU7 727 aaKnown RBP16.76■□□□□ 0.27
CAPN9-202ENST00000354537 PRXQ9BXM0 1461 aa16.76■□□□□ 0.27
CAPN9-202ENST00000354537 DHX57Q6P158 1386 aaKnown RBP16.74■□□□□ 0.27
CAPN9-202ENST00000354537 PABPN1Q86U42 306 aaKnown RBP eCLIP16.73■□□□□ 0.27
CAPN9-202ENST00000354537 CUX2O14529 1486 aa16.72■□□□□ 0.27
CAPN9-202ENST00000354537 RRBP1Q9P2E9 1410 aaKnown RBP16.7■□□□□ 0.26
CAPN9-202ENST00000354537 ARAP1Q96P48 1450 aa16.7■□□□□ 0.26
CAPN9-202ENST00000354537 KIF27Q86VH2 1401 aa16.59■□□□□ 0.25
CAPN9-202ENST00000354537 HMGXB3Q12766 1538 aa16.59■□□□□ 0.25
CAPN9-202ENST00000354537 MAP3K1Q13233 1512 aa16.56■□□□□ 0.24
CAPN9-202ENST00000354537 NCAPD3P42695 1498 aa16.55■□□□□ 0.24
CAPN9-202ENST00000354537 KANK4Q5T7N3 995 aaPredicted RBP16.55■□□□□ 0.24
CAPN9-202ENST00000354537 CCNB3Q8WWL7 1395 aa16.55■□□□□ 0.24
CAPN9-202ENST00000354537 CUX1P39880 1505 aa16.53■□□□□ 0.24
CAPN9-202ENST00000354537 SUPT16HQ9Y5B9 1047 aaKnown RBP16.51■□□□□ 0.23
CAPN9-202ENST00000354537 ARHGAP35Q9NRY4 1499 aa16.5■□□□□ 0.23
CAPN9-202ENST00000354537 RANGAP1P46060 587 aaPredicted RBP16.48■□□□□ 0.23
CAPN9-202ENST00000354537 CFTRP13569 1480 aa16.48■□□□□ 0.23
CAPN9-202ENST00000354537 TIAM1Q13009 1591 aa16.42■□□□□ 0.22
CAPN9-202ENST00000354537 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
CAPN9-202ENST00000354537 MAPKBP1O60336 1514 aa16.41■□□□□ 0.22
CAPN9-202ENST00000354537 RAB3GAP2Q9H2M9 1393 aa16.4■□□□□ 0.22
CAPN9-202ENST00000354537 SETD5Q9C0A6 1442 aa16.39■□□□□ 0.21
CAPN9-202ENST00000354537 PRDM2Q13029 1718 aa16.38■□□□□ 0.21
CAPN9-202ENST00000354537 IGF1RP08069 1367 aa16.36■□□□□ 0.21
CAPN9-202ENST00000354537 LRRC9Q6ZRR7 1453 aa16.35■□□□□ 0.21
CAPN9-202ENST00000354537 FHAD1B1AJZ9 1412 aa16.33■□□□□ 0.2
CAPN9-202ENST00000354537 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms