RNA–Protein interactions for RNA: ENST00000337339.6

MSL3-202, Transcript of MSL complex subunit 3, humanhuman

TSL 2 BASIC

Gene MSL3, Length 3,446 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-202ENST00000337339 NISCHQ9Y2I1 1504 aa19.7■□□□□ 0.74
MSL3-202ENST00000337339 SHROOM4Q9ULL8 1493 aa17.39■□□□□ 0.37
MSL3-202ENST00000337339 DCAF8L2P0C7V8 631 aa17.28■□□□□ 0.36
MSL3-202ENST00000337339 SUPT5HO00267 1087 aaKnown RBP17.1■□□□□ 0.33
MSL3-202ENST00000337339 ZCCHC6Q5VYS8 1495 aaKnown RBP16.57■□□□□ 0.24
MSL3-202ENST00000337339 CCDC180Q9P1Z9 1646 aa16.47■□□□□ 0.23
MSL3-202ENST00000337339 CHIC1Q5VXU3 224 aa16.26■□□□□ 0.19
MSL3-202ENST00000337339 MYO15BQ96JP2 1530 aa16.01■□□□□ 0.15
MSL3-202ENST00000337339 LOC105371045A0A1W2PR82 267 aa16■□□□□ 0.15
MSL3-202ENST00000337339 EHMT2Q96KQ7 1210 aa15.99■□□□□ 0.15
MSL3-202ENST00000337339 ABCC9O60706 1549 aa15.98■□□□□ 0.15
MSL3-202ENST00000337339 PCGF6Q9BYE7 350 aa15.96■□□□□ 0.15
MSL3-202ENST00000337339 FAM9AQ8IZU1 332 aaPredicted RBP15.91■□□□□ 0.14
MSL3-202ENST00000337339 DCAF1Q9Y4B6 1507 aa15.89■□□□□ 0.14
MSL3-202ENST00000337339 SCRIBQ14160 1630 aa15.88■□□□□ 0.13
MSL3-202ENST00000337339 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
MSL3-202ENST00000337339 RSF1Q96T23 1441 aaPredicted RBP15.68■□□□□ 0.1
MSL3-202ENST00000337339 HRCP23327 699 aa15.62■□□□□ 0.09
MSL3-202ENST00000337339 PPARGC1BQ86YN6 1023 aaKnown RBP15.56■□□□□ 0.08
MSL3-202ENST00000337339 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
MSL3-202ENST00000337339 PABPN1Q86U42 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
MSL3-202ENST00000337339 RB1CC1Q8TDY2 1594 aa15.46■□□□□ 0.06
MSL3-202ENST00000337339 NACADO15069 1562 aa15.45■□□□□ 0.06
MSL3-202ENST00000337339 TRIM26Q12899 539 aaPredicted RBP15.44■□□□□ 0.06
MSL3-202ENST00000337339 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
MSL3-202ENST00000337339 TTBK1Q5TCY1 1321 aaPredicted RBP15.4■□□□□ 0.06
MSL3-202ENST00000337339 WIZO95785 1651 aa15.28■□□□□ 0.04
MSL3-202ENST00000337339 UBTFP17480 764 aaKnown RBP15.17■□□□□ 0.02
MSL3-202ENST00000337339 RANGAP1P46060 587 aaPredicted RBP15.16■□□□□ 0.02
MSL3-202ENST00000337339 BAZ1AQ9NRL2 1556 aaPredicted RBP15.13■□□□□ 0.01
MSL3-202ENST00000337339 ABCC8Q09428 1581 aa15.06■□□□□ 0
MSL3-202ENST00000337339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.05■□□□□ 0
MSL3-202ENST00000337339 CCDC88BA6NC98 1476 aa15.05■□□□□ 0
MSL3-202ENST00000337339 CCER1Q8TC90 406 aaPredicted RBP15.03■□□□□ -0
MSL3-202ENST00000337339 ZEB1P37275 1124 aaPredicted RBP15.02□□□□□ -0.01
MSL3-202ENST00000337339 CSRNP3Q8WYN3 585 aa14.98□□□□□ -0.01
MSL3-202ENST00000337339 SOGA1O94964 1423 aa14.97□□□□□ -0.01
MSL3-202ENST00000337339 SMARCA4P51532 1647 aa14.97□□□□□ -0.01
MSL3-202ENST00000337339 TOP2AP11388 1531 aaKnown RBP14.94□□□□□ -0.02
MSL3-202ENST00000337339 RUSC2Q8N2Y8 1516 aa14.87□□□□□ -0.03
MSL3-202ENST00000337339 SMARCA2P51531 1590 aa14.87□□□□□ -0.03
MSL3-202ENST00000337339 APLP2Q06481 763 aa14.83□□□□□ -0.03
MSL3-202ENST00000337339 CEP162Q5TB80 1403 aa14.83□□□□□ -0.04
MSL3-202ENST00000337339 UNC13AQ9UPW8 1703 aa14.82□□□□□ -0.04
MSL3-202ENST00000337339 HNRNPUL2Q1KMD3 747 aaKnown RBP14.82□□□□□ -0.04
MSL3-202ENST00000337339 WRNQ14191 1432 aaPredicted RBP eCLIP14.82□□□□□ -0.04
MSL3-202ENST00000337339 BICRAQ9NZM4 1560 aa14.78□□□□□ -0.04
MSL3-202ENST00000337339 BAZ1BQ9UIG0 1483 aaKnown RBP14.77□□□□□ -0.04
MSL3-202ENST00000337339 ATAD2BQ9ULI0 1458 aa14.73□□□□□ -0.05
MSL3-202ENST00000337339 TNIKQ9UKE5 1360 aa14.73□□□□□ -0.05
MSL3-202ENST00000337339 EIF4G1Q04637 1599 aaKnown RBP14.71□□□□□ -0.05
MSL3-202ENST00000337339 GOLGA3Q08378 1498 aa14.66□□□□□ -0.06
MSL3-202ENST00000337339 EEA1Q15075 1411 aa14.66□□□□□ -0.06
MSL3-202ENST00000337339 CLIP1P30622 1438 aa14.62□□□□□ -0.07
MSL3-202ENST00000337339 AEBP2Q6ZN18 517 aaPredicted RBP14.61□□□□□ -0.07
MSL3-202ENST00000337339 SYNJ1O43426 1573 aa14.58□□□□□ -0.08
MSL3-202ENST00000337339 ITGAEP38570 1179 aa14.58□□□□□ -0.08
MSL3-202ENST00000337339 DIEXFQ68CQ4 756 aaKnown RBP14.58□□□□□ -0.08
MSL3-202ENST00000337339 ATP1B4Q9UN42 357 aaPredicted RBP14.57□□□□□ -0.08
MSL3-202ENST00000337339 CEP164Q9UPV0 1460 aa14.57□□□□□ -0.08
MSL3-202ENST00000337339 RAPGEF2Q9Y4G8 1499 aa14.55□□□□□ -0.08
MSL3-202ENST00000337339 YTHDC1Q96MU7 727 aaKnown RBP14.5□□□□□ -0.09
MSL3-202ENST00000337339 PEG3Q9GZU2 1588 aa14.48□□□□□ -0.09
MSL3-202ENST00000337339 P3H3Q8IVL6 736 aa14.47□□□□□ -0.09
MSL3-202ENST00000337339 KANK4Q5T7N3 995 aaPredicted RBP14.43□□□□□ -0.1
MSL3-202ENST00000337339 VPS8Q8N3P4 1428 aa14.43□□□□□ -0.1
MSL3-202ENST00000337339 SCAF1Q9H7N4 1312 aaKnown RBP14.41□□□□□ -0.1
MSL3-202ENST00000337339 ZNF316A6NFI3 1004 aaPredicted RBP14.41□□□□□ -0.1
MSL3-202ENST00000337339 KIF27Q86VH2 1401 aa14.39□□□□□ -0.11
MSL3-202ENST00000337339 NCAPD3P42695 1498 aa14.38□□□□□ -0.11
MSL3-202ENST00000337339 NEUROD1Q13562 356 aa14.35□□□□□ -0.11
MSL3-202ENST00000337339 CENPBP07199 599 aaPredicted RBP14.34□□□□□ -0.11
MSL3-202ENST00000337339 KIF21BO75037 1637 aa14.32□□□□□ -0.12
MSL3-202ENST00000337339 CUX2O14529 1486 aa14.32□□□□□ -0.12
MSL3-202ENST00000337339 TOP2BQ02880 1626 aa14.32□□□□□ -0.12
MSL3-202ENST00000337339 FAM50AQ14320 339 aaKnown RBP14.31□□□□□ -0.12
MSL3-202ENST00000337339 CUX1P39880 1505 aa14.3□□□□□ -0.12
MSL3-202ENST00000337339 ACIN1Q9UKV3 1341 aaKnown RBP14.3□□□□□ -0.12
MSL3-202ENST00000337339 CADPSQ9ULU8 1353 aa14.27□□□□□ -0.12
MSL3-202ENST00000337339 CFTRP13569 1480 aa14.27□□□□□ -0.12
MSL3-202ENST00000337339 GTF3C3Q9Y5Q9 886 aa14.27□□□□□ -0.13
MSL3-202ENST00000337339 MIER1Q8N108 512 aa14.26□□□□□ -0.13
MSL3-202ENST00000337339 PRXQ9BXM0 1461 aa14.25□□□□□ -0.13
MSL3-202ENST00000337339 HMGXB3Q12766 1538 aa14.24□□□□□ -0.13
MSL3-202ENST00000337339 CARMIL1Q5VZK9 1371 aa14.24□□□□□ -0.13
MSL3-202ENST00000337339 ARAP1Q96P48 1450 aa14.24□□□□□ -0.13
MSL3-202ENST00000337339 IGF1RP08069 1367 aa14.22□□□□□ -0.13
MSL3-202ENST00000337339 DNAJC5BQ9UF47 199 aa14.18□□□□□ -0.14
MSL3-202ENST00000337339 ARID3CA6NKF2 412 aa14.17□□□□□ -0.14
MSL3-202ENST00000337339 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
MSL3-202ENST00000337339 BIVM-ERCC5R4GMW8 1640 aa14.15□□□□□ -0.14
MSL3-202ENST00000337339 CCNB3Q8WWL7 1395 aa14.14□□□□□ -0.15
MSL3-202ENST00000337339 RAD54L2Q9Y4B4 1467 aa14.14□□□□□ -0.15
MSL3-202ENST00000337339 ARHGAP35Q9NRY4 1499 aa14.14□□□□□ -0.15
MSL3-202ENST00000337339 ERICH3Q5RHP9 1530 aa14.13□□□□□ -0.15
MSL3-202ENST00000337339 NESP48681 1621 aa14.13□□□□□ -0.15
MSL3-202ENST00000337339 FANCD2Q9BXW9 1451 aa14.13□□□□□ -0.15
MSL3-202ENST00000337339 CC2D2AQ9P2K1 1620 aa14.11□□□□□ -0.15
MSL3-202ENST00000337339 TDRD9Q8NDG6 1382 aaKnown RBP14.11□□□□□ -0.15
MSL3-202ENST00000337339 DHX57Q6P158 1386 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms