RNA–Protein interactions for RNA: ENST00000333861.4

CCDC87-201, Transcript of coiled-coil domain containing 87, humanhuman

APPRIS P1 BASIC

Gene CCDC87, Length 2,908 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87-201ENST00000333861 NISCHQ9Y2I1 1504 aa21.95■■□□□ 1.1
CCDC87-201ENST00000333861 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
CCDC87-201ENST00000333861 SUPT5HO00267 1087 aaKnown RBP19.04■□□□□ 0.64
CCDC87-201ENST00000333861 CCDC180Q9P1Z9 1646 aa18.97■□□□□ 0.63
CCDC87-201ENST00000333861 PPARGC1BQ86YN6 1023 aaKnown RBP18.93■□□□□ 0.62
CCDC87-201ENST00000333861 HRCP23327 699 aa18.81■□□□□ 0.6
CCDC87-201ENST00000333861 PCGF6Q9BYE7 350 aa18.76■□□□□ 0.59
CCDC87-201ENST00000333861 DCAF8L2P0C7V8 631 aa18.63■□□□□ 0.57
CCDC87-201ENST00000333861 MYO15BQ96JP2 1530 aa18.47■□□□□ 0.55
CCDC87-201ENST00000333861 ABCC9O60706 1549 aa18.39■□□□□ 0.54
CCDC87-201ENST00000333861 ZCCHC6Q5VYS8 1495 aaKnown RBP18.38■□□□□ 0.53
CCDC87-201ENST00000333861 LOC105371045A0A1W2PR82 267 aa18.29■□□□□ 0.52
CCDC87-201ENST00000333861 CHIC1Q5VXU3 224 aa18.28■□□□□ 0.52
CCDC87-201ENST00000333861 EHMT2Q96KQ7 1210 aa18.14■□□□□ 0.49
CCDC87-201ENST00000333861 PELP1Q8IZL8 1130 aaKnown RBP18.1■□□□□ 0.49
CCDC87-201ENST00000333861 SCAF1Q9H7N4 1312 aaKnown RBP18.06■□□□□ 0.48
CCDC87-201ENST00000333861 DCAF1Q9Y4B6 1507 aa17.96■□□□□ 0.47
CCDC87-201ENST00000333861 FAM9AQ8IZU1 332 aaPredicted RBP17.8■□□□□ 0.44
CCDC87-201ENST00000333861 NACADO15069 1562 aa17.77■□□□□ 0.44
CCDC87-201ENST00000333861 SCRIBQ14160 1630 aa17.73■□□□□ 0.43
CCDC87-201ENST00000333861 TRIM26Q12899 539 aaPredicted RBP17.69■□□□□ 0.42
CCDC87-201ENST00000333861 RB1CC1Q8TDY2 1594 aa17.68■□□□□ 0.42
CCDC87-201ENST00000333861 TTBK1Q5TCY1 1321 aaPredicted RBP17.58■□□□□ 0.4
CCDC87-201ENST00000333861 NEUROD1Q13562 356 aa17.53■□□□□ 0.4
CCDC87-201ENST00000333861 PABPN1Q86U42 306 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC87-201ENST00000333861 GTF3C3Q9Y5Q9 886 aa17.46■□□□□ 0.39
CCDC87-201ENST00000333861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.44■□□□□ 0.38
CCDC87-201ENST00000333861 ACIN1Q9UKV3 1341 aaKnown RBP17.43■□□□□ 0.38
CCDC87-201ENST00000333861 ZEB1P37275 1124 aaPredicted RBP17.39■□□□□ 0.37
CCDC87-201ENST00000333861 YTHDC1Q96MU7 727 aaKnown RBP17.31■□□□□ 0.36
CCDC87-201ENST00000333861 MYT1Q01538 1121 aa17.31■□□□□ 0.36
CCDC87-201ENST00000333861 UNC13AQ9UPW8 1703 aa17.29■□□□□ 0.36
CCDC87-201ENST00000333861 TRIM41Q8WV44 630 aa17.28■□□□□ 0.36
CCDC87-201ENST00000333861 CCER1Q8TC90 406 aaPredicted RBP17.23■□□□□ 0.35
CCDC87-201ENST00000333861 CECR2Q9BXF3 1484 aa17.2■□□□□ 0.34
CCDC87-201ENST00000333861 BICRAQ9NZM4 1560 aa17.17■□□□□ 0.34
CCDC87-201ENST00000333861 DIEXFQ68CQ4 756 aaKnown RBP17.11■□□□□ 0.33
CCDC87-201ENST00000333861 CENPBP07199 599 aaPredicted RBP17.1■□□□□ 0.33
CCDC87-201ENST00000333861 RSF1Q96T23 1441 aaPredicted RBP17.08■□□□□ 0.33
CCDC87-201ENST00000333861 MROH2BQ7Z745 1585 aa17.04■□□□□ 0.32
CCDC87-201ENST00000333861 BAZ1AQ9NRL2 1556 aaPredicted RBP16.92■□□□□ 0.3
CCDC87-201ENST00000333861 WIZO95785 1651 aa16.89■□□□□ 0.29
CCDC87-201ENST00000333861 SMARCA4P51532 1647 aa16.86■□□□□ 0.29
CCDC87-201ENST00000333861 MIER1Q8N108 512 aa16.81■□□□□ 0.28
CCDC87-201ENST00000333861 RANGAP1P46060 587 aaPredicted RBP16.74■□□□□ 0.27
CCDC87-201ENST00000333861 HNRNPUL2Q1KMD3 747 aaKnown RBP16.73■□□□□ 0.27
CCDC87-201ENST00000333861 EIF4G1Q04637 1599 aaKnown RBP16.69■□□□□ 0.26
CCDC87-201ENST00000333861 BCL11AQ9H165 835 aa16.69■□□□□ 0.26
CCDC87-201ENST00000333861 ATAD2BQ9ULI0 1458 aa16.66■□□□□ 0.26
CCDC87-201ENST00000333861 ZNF316A6NFI3 1004 aaPredicted RBP16.66■□□□□ 0.26
CCDC87-201ENST00000333861 TOP2AP11388 1531 aaKnown RBP16.6■□□□□ 0.25
CCDC87-201ENST00000333861 BAZ1BQ9UIG0 1483 aaKnown RBP16.59■□□□□ 0.25
CCDC87-201ENST00000333861 SMARCA2P51531 1590 aa16.57■□□□□ 0.24
CCDC87-201ENST00000333861 CCDC88BA6NC98 1476 aa16.55■□□□□ 0.24
CCDC87-201ENST00000333861 BCANQ96GW7 911 aa16.54■□□□□ 0.24
CCDC87-201ENST00000333861 UBTFP17480 764 aaKnown RBP16.54■□□□□ 0.24
CCDC87-201ENST00000333861 PEG3Q9GZU2 1588 aa16.53■□□□□ 0.24
CCDC87-201ENST00000333861 CSRNP3Q8WYN3 585 aa16.5■□□□□ 0.23
CCDC87-201ENST00000333861 ANP32EQ9BTT0 268 aa16.49■□□□□ 0.23
CCDC87-201ENST00000333861 CC2D2AQ9P2K1 1620 aa16.49■□□□□ 0.23
CCDC87-201ENST00000333861 SUPT16HQ9Y5B9 1047 aaKnown RBP16.46■□□□□ 0.23
CCDC87-201ENST00000333861 NCAPD3P42695 1498 aa16.46■□□□□ 0.23
CCDC87-201ENST00000333861 TSHZ2Q9NRE2 1034 aa16.45■□□□□ 0.22
CCDC87-201ENST00000333861 KCNH8Q96L42 1107 aa16.4■□□□□ 0.22
CCDC87-201ENST00000333861 DNAJC5BQ9UF47 199 aa16.38■□□□□ 0.21
CCDC87-201ENST00000333861 HMGXB3Q12766 1538 aa16.36■□□□□ 0.21
CCDC87-201ENST00000333861 ABCC8Q09428 1581 aa16.34■□□□□ 0.21
CCDC87-201ENST00000333861 SOGA1O94964 1423 aa16.33■□□□□ 0.2
CCDC87-201ENST00000333861 CEP162Q5TB80 1403 aa16.32■□□□□ 0.2
CCDC87-201ENST00000333861 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
CCDC87-201ENST00000333861 ITGAEP38570 1179 aa16.25■□□□□ 0.19
CCDC87-201ENST00000333861 HIRIP3Q9BW71 556 aaPredicted RBP16.18■□□□□ 0.18
CCDC87-201ENST00000333861 FKBP8Q14318 412 aa16.13■□□□□ 0.17
CCDC87-201ENST00000333861 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
CCDC87-201ENST00000333861 NESP48681 1621 aa16.11■□□□□ 0.17
CCDC87-201ENST00000333861 CFTRP13569 1480 aa16.11■□□□□ 0.17
CCDC87-201ENST00000333861 WRNQ14191 1432 aaPredicted RBP eCLIP16.1■□□□□ 0.17
CCDC87-201ENST00000333861 PRKCSHP14314 528 aaPredicted RBP16.09■□□□□ 0.17
CCDC87-201ENST00000333861 APLP2Q06481 763 aa16.08■□□□□ 0.17
CCDC87-201ENST00000333861 RBM19Q9Y4C8 960 aaKnown RBP16.06■□□□□ 0.16
CCDC87-201ENST00000333861 TRIM52Q96A61 297 aa16.05■□□□□ 0.16
CCDC87-201ENST00000333861 IRX6P78412 446 aaPredicted RBP16.04■□□□□ 0.16
CCDC87-201ENST00000333861 TNIKQ9UKE5 1360 aa16.01■□□□□ 0.15
CCDC87-201ENST00000333861 DDX10Q13206 875 aaKnown RBP16■□□□□ 0.15
CCDC87-201ENST00000333861 SYNJ1O43426 1573 aa16■□□□□ 0.15
CCDC87-201ENST00000333861 MSH5O43196 834 aa15.99■□□□□ 0.15
CCDC87-201ENST00000333861 FANCD2Q9BXW9 1451 aa15.96■□□□□ 0.15
CCDC87-201ENST00000333861 KANK4Q5T7N3 995 aaPredicted RBP15.96■□□□□ 0.15
CCDC87-201ENST00000333861 CLSPNQ9HAW4 1339 aa15.93■□□□□ 0.14
CCDC87-201ENST00000333861 CUX1P39880 1505 aa15.91■□□□□ 0.14
CCDC87-201ENST00000333861 CLIP1P30622 1438 aa15.89■□□□□ 0.13
CCDC87-201ENST00000333861 SIN3AQ96ST3 1273 aa15.88■□□□□ 0.13
CCDC87-201ENST00000333861 DHX57Q6P158 1386 aaKnown RBP15.88■□□□□ 0.13
CCDC87-201ENST00000333861 LAMC3Q9Y6N6 1575 aa15.87■□□□□ 0.13
CCDC87-201ENST00000333861 PDS5BQ9NTI5 1447 aa15.86■□□□□ 0.13
CCDC87-201ENST00000333861 TOP2BQ02880 1626 aa15.85■□□□□ 0.13
CCDC87-201ENST00000333861 SENP3-EIF4A1A0A087X0R7 540 aa15.84■□□□□ 0.13
CCDC87-201ENST00000333861 CEP164Q9UPV0 1460 aa15.84■□□□□ 0.13
CCDC87-201ENST00000333861 PRDM2Q13029 1718 aa15.83■□□□□ 0.12
CCDC87-201ENST00000333861 ERICH6Q7L0X2 663 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms