RNA–Protein interactions for RNA: ENST00000326279.10

LIN28A-202, Transcript of lin-28 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIN28A, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28A-202ENST00000326279 NISCHQ9Y2I1 1504 aa26.14■■□□□ 1.78
LIN28A-202ENST00000326279 DCAF8L2P0C7V8 631 aa24.96■■□□□ 1.59
LIN28A-202ENST00000326279 SHROOM4Q9ULL8 1493 aa23.73■■□□□ 1.39
LIN28A-202ENST00000326279 SUPT5HO00267 1087 aaKnown RBP23.29■■□□□ 1.32
LIN28A-202ENST00000326279 ABCC9O60706 1549 aa22.75■■□□□ 1.23
LIN28A-202ENST00000326279 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
LIN28A-202ENST00000326279 PABPN1Q86U42 306 aaKnown RBP eCLIP22.23■■□□□ 1.15
LIN28A-202ENST00000326279 FAM9AQ8IZU1 332 aaPredicted RBP21.86■■□□□ 1.09
LIN28A-202ENST00000326279 CCDC180Q9P1Z9 1646 aa21.73■■□□□ 1.07
LIN28A-202ENST00000326279 ZCCHC6Q5VYS8 1495 aaKnown RBP21.68■■□□□ 1.06
LIN28A-202ENST00000326279 SCRIBQ14160 1630 aa21.51■■□□□ 1.03
LIN28A-202ENST00000326279 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
LIN28A-202ENST00000326279 RANGAP1P46060 587 aaPredicted RBP21.42■■□□□ 1.02
LIN28A-202ENST00000326279 TTBK1Q5TCY1 1321 aaPredicted RBP21.25■□□□□ 0.99
LIN28A-202ENST00000326279 CHIC1Q5VXU3 224 aa21.13■□□□□ 0.97
LIN28A-202ENST00000326279 LOC105371045A0A1W2PR82 267 aa21.06■□□□□ 0.96
LIN28A-202ENST00000326279 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
LIN28A-202ENST00000326279 PCGF6Q9BYE7 350 aa20.95■□□□□ 0.94
LIN28A-202ENST00000326279 UBTFP17480 764 aaKnown RBP20.94■□□□□ 0.94
LIN28A-202ENST00000326279 NACADO15069 1562 aa20.93■□□□□ 0.94
LIN28A-202ENST00000326279 PPARGC1BQ86YN6 1023 aaKnown RBP20.92■□□□□ 0.94
LIN28A-202ENST00000326279 CECR2Q9BXF3 1484 aa20.85■□□□□ 0.93
LIN28A-202ENST00000326279 ATP1B4Q9UN42 357 aaPredicted RBP20.81■□□□□ 0.92
LIN28A-202ENST00000326279 RSF1Q96T23 1441 aaPredicted RBP20.71■□□□□ 0.91
LIN28A-202ENST00000326279 DCAF1Q9Y4B6 1507 aa20.7■□□□□ 0.9
LIN28A-202ENST00000326279 APLP2Q06481 763 aa20.63■□□□□ 0.89
LIN28A-202ENST00000326279 MROH2BQ7Z745 1585 aa20.45■□□□□ 0.86
LIN28A-202ENST00000326279 FBLN2P98095 1184 aa20.42■□□□□ 0.86
LIN28A-202ENST00000326279 BAZ1BQ9UIG0 1483 aaKnown RBP20.29■□□□□ 0.84
LIN28A-202ENST00000326279 MYO15BQ96JP2 1530 aa20.27■□□□□ 0.84
LIN28A-202ENST00000326279 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.25■□□□□ 0.83
LIN28A-202ENST00000326279 HNRNPUL2Q1KMD3 747 aaKnown RBP20.25■□□□□ 0.83
LIN28A-202ENST00000326279 BAZ1AQ9NRL2 1556 aaPredicted RBP20.25■□□□□ 0.83
LIN28A-202ENST00000326279 P3H3Q8IVL6 736 aa20.24■□□□□ 0.83
LIN28A-202ENST00000326279 ITGAEP38570 1179 aa20.19■□□□□ 0.82
LIN28A-202ENST00000326279 ARID3CA6NKF2 412 aa20.18■□□□□ 0.82
LIN28A-202ENST00000326279 CSRNP3Q8WYN3 585 aa20.18■□□□□ 0.82
LIN28A-202ENST00000326279 WIZO95785 1651 aa20.15■□□□□ 0.82
LIN28A-202ENST00000326279 TRIM26Q12899 539 aaPredicted RBP20.15■□□□□ 0.82
LIN28A-202ENST00000326279 DNAJC5BQ9UF47 199 aa20.11■□□□□ 0.81
LIN28A-202ENST00000326279 CCER1Q8TC90 406 aaPredicted RBP20.09■□□□□ 0.81
LIN28A-202ENST00000326279 CCDC88BA6NC98 1476 aa20.05■□□□□ 0.8
LIN28A-202ENST00000326279 ATAD2BQ9ULI0 1458 aa19.98■□□□□ 0.79
LIN28A-202ENST00000326279 HRCP23327 699 aa19.93■□□□□ 0.78
LIN28A-202ENST00000326279 WRNQ14191 1432 aaPredicted RBP eCLIP19.9■□□□□ 0.78
LIN28A-202ENST00000326279 SMARCA4P51532 1647 aa19.89■□□□□ 0.77
LIN28A-202ENST00000326279 ABCC8Q09428 1581 aa19.88■□□□□ 0.77
LIN28A-202ENST00000326279 BICRAQ9NZM4 1560 aa19.8■□□□□ 0.76
LIN28A-202ENST00000326279 SMARCA2P51531 1590 aa19.8■□□□□ 0.76
LIN28A-202ENST00000326279 ERCC6Q03468 1493 aa19.79■□□□□ 0.76
LIN28A-202ENST00000326279 SOGA1O94964 1423 aa19.79■□□□□ 0.76
LIN28A-202ENST00000326279 EIF4G1Q04637 1599 aaKnown RBP19.77■□□□□ 0.75
LIN28A-202ENST00000326279 MYT1LQ9UL68 1186 aa19.76■□□□□ 0.75
LIN28A-202ENST00000326279 CHMP7Q8WUX9 453 aaPredicted RBP19.73■□□□□ 0.75
LIN28A-202ENST00000326279 ZEB1P37275 1124 aaPredicted RBP19.73■□□□□ 0.75
LIN28A-202ENST00000326279 FAM50AQ14320 339 aaKnown RBP19.72■□□□□ 0.75
LIN28A-202ENST00000326279 TOP2AP11388 1531 aaKnown RBP19.72■□□□□ 0.75
LIN28A-202ENST00000326279 CADPSQ9ULU8 1353 aa19.68■□□□□ 0.74
LIN28A-202ENST00000326279 TDRD9Q8NDG6 1382 aaKnown RBP19.67■□□□□ 0.74
LIN28A-202ENST00000326279 NESP48681 1621 aa19.58■□□□□ 0.72
LIN28A-202ENST00000326279 CUX2O14529 1486 aa19.56■□□□□ 0.72
LIN28A-202ENST00000326279 CC2D2AQ9P2K1 1620 aa19.54■□□□□ 0.72
LIN28A-202ENST00000326279 NCAPD3P42695 1498 aa19.54■□□□□ 0.72
LIN28A-202ENST00000326279 RUSC2Q8N2Y8 1516 aa19.54■□□□□ 0.72
LIN28A-202ENST00000326279 UNC13AQ9UPW8 1703 aa19.54■□□□□ 0.72
LIN28A-202ENST00000326279 ZNF777Q9ULD5 760 aaPredicted RBP19.52■□□□□ 0.71
LIN28A-202ENST00000326279 KIF27Q86VH2 1401 aa19.51■□□□□ 0.71
LIN28A-202ENST00000326279 PDS5BQ9NTI5 1447 aa19.5■□□□□ 0.71
LIN28A-202ENST00000326279 FANCD2Q9BXW9 1451 aa19.44■□□□□ 0.7
LIN28A-202ENST00000326279 CLIP1P30622 1438 aa19.43■□□□□ 0.7
LIN28A-202ENST00000326279 CARMIL1Q5VZK9 1371 aa19.4■□□□□ 0.7
LIN28A-202ENST00000326279 CEP162Q5TB80 1403 aa19.39■□□□□ 0.69
LIN28A-202ENST00000326279 KCNH8Q96L42 1107 aa19.34■□□□□ 0.69
LIN28A-202ENST00000326279 RAD54L2Q9Y4B4 1467 aa19.34■□□□□ 0.69
LIN28A-202ENST00000326279 TRIM52Q96A61 297 aa19.34■□□□□ 0.69
LIN28A-202ENST00000326279 CEP164Q9UPV0 1460 aa19.33■□□□□ 0.69
LIN28A-202ENST00000326279 YTHDC1Q96MU7 727 aaKnown RBP19.33■□□□□ 0.68
LIN28A-202ENST00000326279 GOLGA3Q08378 1498 aa19.32■□□□□ 0.68
LIN28A-202ENST00000326279 CHIC2Q9UKJ5 165 aa19.32■□□□□ 0.68
LIN28A-202ENST00000326279 NEUROD1Q13562 356 aa19.3■□□□□ 0.68
LIN28A-202ENST00000326279 CNGB1Q14028 1251 aaPredicted RBP19.26■□□□□ 0.67
LIN28A-202ENST00000326279 EEA1Q15075 1411 aa19.26■□□□□ 0.67
LIN28A-202ENST00000326279 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
LIN28A-202ENST00000326279 RAPGEF2Q9Y4G8 1499 aa19.2■□□□□ 0.66
LIN28A-202ENST00000326279 CFTRP13569 1480 aa19.2■□□□□ 0.66
LIN28A-202ENST00000326279 FGD5Q6ZNL6 1462 aa19.2■□□□□ 0.66
LIN28A-202ENST00000326279 AQRO60306 1485 aaKnown RBP eCLIP19.19■□□□□ 0.66
LIN28A-202ENST00000326279 POLR3GLQ9BT43 218 aa19.18■□□□□ 0.66
LIN28A-202ENST00000326279 CDK11AQ9UQ88 783 aaPredicted RBP19.18■□□□□ 0.66
LIN28A-202ENST00000326279 NPM1P06748 294 aaKnown RBP eCLIP19.18■□□□□ 0.66
LIN28A-202ENST00000326279 MTUS2Q5JR59 1369 aa19.16■□□□□ 0.66
LIN28A-202ENST00000326279 PLPPR3Q6T4P5 718 aa19.14■□□□□ 0.65
LIN28A-202ENST00000326279 KANK4Q5T7N3 995 aaPredicted RBP19.14■□□□□ 0.65
LIN28A-202ENST00000326279 IGF1RP08069 1367 aa19.1■□□□□ 0.65
LIN28A-202ENST00000326279 HMGXB3Q12766 1538 aa19.1■□□□□ 0.65
LIN28A-202ENST00000326279 ZNF326Q5BKZ1 582 aaKnown RBP19.09■□□□□ 0.65
LIN28A-202ENST00000326279 SYNJ1O43426 1573 aa19.09■□□□□ 0.65
LIN28A-202ENST00000326279 DIEXFQ68CQ4 756 aaKnown RBP19.07■□□□□ 0.64
LIN28A-202ENST00000326279 RRP7BPQ9NSQ0 103 aa19.06■□□□□ 0.64
LIN28A-202ENST00000326279 PLEKHD1A6NEE1 506 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms