RNA–Protein interactions for RNA: ENST00000312849.4

LSMEM1-201, Transcript of leucine rich single-pass membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSMEM1, Length 1,870 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSMEM1-201ENST00000312849 NISCHQ9Y2I1 1504 aa20.13■□□□□ 0.81
LSMEM1-201ENST00000312849 CCDC180Q9P1Z9 1646 aa17.28■□□□□ 0.36
LSMEM1-201ENST00000312849 ZCCHC6Q5VYS8 1495 aaKnown RBP17.03■□□□□ 0.32
LSMEM1-201ENST00000312849 SHROOM4Q9ULL8 1493 aa16.87■□□□□ 0.29
LSMEM1-201ENST00000312849 DCAF1Q9Y4B6 1507 aa16.66■□□□□ 0.26
LSMEM1-201ENST00000312849 SUPT5HO00267 1087 aaKnown RBP16.57■□□□□ 0.24
LSMEM1-201ENST00000312849 DCAF8L2P0C7V8 631 aa16.4■□□□□ 0.22
LSMEM1-201ENST00000312849 CHIC1Q5VXU3 224 aa16.22■□□□□ 0.19
LSMEM1-201ENST00000312849 MYO15BQ96JP2 1530 aa16.21■□□□□ 0.19
LSMEM1-201ENST00000312849 ABCC9O60706 1549 aa16.08■□□□□ 0.17
LSMEM1-201ENST00000312849 SCRIBQ14160 1630 aa15.95■□□□□ 0.14
LSMEM1-201ENST00000312849 NACADO15069 1562 aa15.92■□□□□ 0.14
LSMEM1-201ENST00000312849 RSF1Q96T23 1441 aaPredicted RBP15.86■□□□□ 0.13
LSMEM1-201ENST00000312849 RB1CC1Q8TDY2 1594 aa15.78■□□□□ 0.12
LSMEM1-201ENST00000312849 HRCP23327 699 aa15.74■□□□□ 0.11
LSMEM1-201ENST00000312849 PCGF6Q9BYE7 350 aa15.62■□□□□ 0.09
LSMEM1-201ENST00000312849 LOC105371045A0A1W2PR82 267 aa15.61■□□□□ 0.09
LSMEM1-201ENST00000312849 MROH2BQ7Z745 1585 aa15.57■□□□□ 0.08
LSMEM1-201ENST00000312849 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
LSMEM1-201ENST00000312849 TRIM41Q8WV44 630 aa15.55■□□□□ 0.08
LSMEM1-201ENST00000312849 BAZ1AQ9NRL2 1556 aaPredicted RBP15.51■□□□□ 0.07
LSMEM1-201ENST00000312849 WIZO95785 1651 aa15.5■□□□□ 0.07
LSMEM1-201ENST00000312849 TRIM26Q12899 539 aaPredicted RBP15.48■□□□□ 0.07
LSMEM1-201ENST00000312849 UNC13AQ9UPW8 1703 aa15.37■□□□□ 0.05
LSMEM1-201ENST00000312849 EIF4G1Q04637 1599 aaKnown RBP15.36■□□□□ 0.05
LSMEM1-201ENST00000312849 TOP2AP11388 1531 aaKnown RBP15.35■□□□□ 0.05
LSMEM1-201ENST00000312849 SMARCA4P51532 1647 aa15.34■□□□□ 0.05
LSMEM1-201ENST00000312849 ZEB1P37275 1124 aaPredicted RBP15.27■□□□□ 0.03
LSMEM1-201ENST00000312849 FAM9AQ8IZU1 332 aaPredicted RBP15.27■□□□□ 0.03
LSMEM1-201ENST00000312849 SMARCA2P51531 1590 aa15.22■□□□□ 0.03
LSMEM1-201ENST00000312849 PPARGC1BQ86YN6 1023 aaKnown RBP15.2■□□□□ 0.02
LSMEM1-201ENST00000312849 CCDC88BA6NC98 1476 aa15.19■□□□□ 0.02
LSMEM1-201ENST00000312849 BICRAQ9NZM4 1560 aa15.13■□□□□ 0.01
LSMEM1-201ENST00000312849 PEG3Q9GZU2 1588 aa15.12■□□□□ 0.01
LSMEM1-201ENST00000312849 EEA1Q15075 1411 aa15.09■□□□□ 0.01
LSMEM1-201ENST00000312849 ABCC8Q09428 1581 aa15.08■□□□□ 0
LSMEM1-201ENST00000312849 WRNQ14191 1432 aaPredicted RBP eCLIP15.02□□□□□ -0.01
LSMEM1-201ENST00000312849 EHMT2Q96KQ7 1210 aa15.01□□□□□ -0.01
LSMEM1-201ENST00000312849 TNIKQ9UKE5 1360 aa14.98□□□□□ -0.01
LSMEM1-201ENST00000312849 PABPN1Q86U42 306 aaKnown RBP eCLIP14.93□□□□□ -0.02
LSMEM1-201ENST00000312849 CEP162Q5TB80 1403 aa14.93□□□□□ -0.02
LSMEM1-201ENST00000312849 SOGA1O94964 1423 aa14.92□□□□□ -0.02
LSMEM1-201ENST00000312849 CSRNP3Q8WYN3 585 aa14.92□□□□□ -0.02
LSMEM1-201ENST00000312849 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
LSMEM1-201ENST00000312849 GOLGA3Q08378 1498 aa14.89□□□□□ -0.03
LSMEM1-201ENST00000312849 BAZ1BQ9UIG0 1483 aaKnown RBP14.88□□□□□ -0.03
LSMEM1-201ENST00000312849 AEBP2Q6ZN18 517 aaPredicted RBP14.87□□□□□ -0.03
LSMEM1-201ENST00000312849 KIF21BO75037 1637 aa14.85□□□□□ -0.03
LSMEM1-201ENST00000312849 RUSC2Q8N2Y8 1516 aa14.83□□□□□ -0.04
LSMEM1-201ENST00000312849 SYNJ1O43426 1573 aa14.82□□□□□ -0.04
LSMEM1-201ENST00000312849 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
LSMEM1-201ENST00000312849 UBTFP17480 764 aaKnown RBP14.79□□□□□ -0.04
LSMEM1-201ENST00000312849 CCER1Q8TC90 406 aaPredicted RBP14.76□□□□□ -0.05
LSMEM1-201ENST00000312849 TOP2BQ02880 1626 aa14.74□□□□□ -0.05
LSMEM1-201ENST00000312849 BIVM-ERCC5R4GMW8 1640 aa14.72□□□□□ -0.05
LSMEM1-201ENST00000312849 HMGXB3Q12766 1538 aa14.72□□□□□ -0.05
LSMEM1-201ENST00000312849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.7□□□□□ -0.06
LSMEM1-201ENST00000312849 NCAPD3P42695 1498 aa14.67□□□□□ -0.06
LSMEM1-201ENST00000312849 CLIP1P30622 1438 aa14.67□□□□□ -0.06
LSMEM1-201ENST00000312849 VPS8Q8N3P4 1428 aa14.64□□□□□ -0.07
LSMEM1-201ENST00000312849 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
LSMEM1-201ENST00000312849 RAPGEF2Q9Y4G8 1499 aa14.6□□□□□ -0.07
LSMEM1-201ENST00000312849 PRDM2Q13029 1718 aa14.58□□□□□ -0.08
LSMEM1-201ENST00000312849 TTBK1Q5TCY1 1321 aaPredicted RBP14.55□□□□□ -0.08
LSMEM1-201ENST00000312849 APLP2Q06481 763 aa14.55□□□□□ -0.08
LSMEM1-201ENST00000312849 PRXQ9BXM0 1461 aa14.55□□□□□ -0.08
LSMEM1-201ENST00000312849 CFTRP13569 1480 aa14.52□□□□□ -0.08
LSMEM1-201ENST00000312849 CUX1P39880 1505 aa14.52□□□□□ -0.09
LSMEM1-201ENST00000312849 KIF27Q86VH2 1401 aa14.49□□□□□ -0.09
LSMEM1-201ENST00000312849 DIEXFQ68CQ4 756 aaKnown RBP14.48□□□□□ -0.09
LSMEM1-201ENST00000312849 ARAP1Q96P48 1450 aa14.43□□□□□ -0.1
LSMEM1-201ENST00000312849 ZNF316A6NFI3 1004 aaPredicted RBP14.43□□□□□ -0.1
LSMEM1-201ENST00000312849 HNRNPUL2Q1KMD3 747 aaKnown RBP14.4□□□□□ -0.1
LSMEM1-201ENST00000312849 SCAF1Q9H7N4 1312 aaKnown RBP14.4□□□□□ -0.1
LSMEM1-201ENST00000312849 CLSPNQ9HAW4 1339 aa14.38□□□□□ -0.11
LSMEM1-201ENST00000312849 CENPBP07199 599 aaPredicted RBP14.38□□□□□ -0.11
LSMEM1-201ENST00000312849 ACIN1Q9UKV3 1341 aaKnown RBP14.37□□□□□ -0.11
LSMEM1-201ENST00000312849 PELP1Q8IZL8 1130 aaKnown RBP14.36□□□□□ -0.11
LSMEM1-201ENST00000312849 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
LSMEM1-201ENST00000312849 RANGAP1P46060 587 aaPredicted RBP14.32□□□□□ -0.12
LSMEM1-201ENST00000312849 RRBP1Q9P2E9 1410 aaKnown RBP14.31□□□□□ -0.12
LSMEM1-201ENST00000312849 ARHGAP35Q9NRY4 1499 aa14.31□□□□□ -0.12
LSMEM1-201ENST00000312849 MAP3K1Q13233 1512 aa14.3□□□□□ -0.12
LSMEM1-201ENST00000312849 CUX2O14529 1486 aa14.3□□□□□ -0.12
LSMEM1-201ENST00000312849 IGF1RP08069 1367 aa14.28□□□□□ -0.12
LSMEM1-201ENST00000312849 NEUROD1Q13562 356 aa14.26□□□□□ -0.13
LSMEM1-201ENST00000312849 FGD5Q6ZNL6 1462 aa14.25□□□□□ -0.13
LSMEM1-201ENST00000312849 CC2D2AQ9P2K1 1620 aa14.24□□□□□ -0.13
LSMEM1-201ENST00000312849 KANK4Q5T7N3 995 aaPredicted RBP14.24□□□□□ -0.13
LSMEM1-201ENST00000312849 CARMIL1Q5VZK9 1371 aa14.23□□□□□ -0.13
LSMEM1-201ENST00000312849 DHX57Q6P158 1386 aaKnown RBP14.23□□□□□ -0.13
LSMEM1-201ENST00000312849 CCNB3Q8WWL7 1395 aa14.21□□□□□ -0.13
LSMEM1-201ENST00000312849 TIAM1Q13009 1591 aa14.21□□□□□ -0.14
LSMEM1-201ENST00000312849 DNMBPQ6XZF7 1577 aa14.2□□□□□ -0.14
LSMEM1-201ENST00000312849 FANCD2Q9BXW9 1451 aa14.19□□□□□ -0.14
LSMEM1-201ENST00000312849 FHAD1B1AJZ9 1412 aa14.18□□□□□ -0.14
LSMEM1-201ENST00000312849 CFAP43Q8NDM7 1665 aa14.16□□□□□ -0.14
LSMEM1-201ENST00000312849 CUL7Q14999 1698 aa14.16□□□□□ -0.14
LSMEM1-201ENST00000312849 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
LSMEM1-201ENST00000312849 EFCAB5A4FU69 1503 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms