RNA–Protein interactions for RNA: ENST00000304523.9

LDB2-201, Transcript of LIM domain binding 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB2, Length 2,548 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2-201ENST00000304523 NISCHQ9Y2I1 1504 aa18.82■□□□□ 0.6
LDB2-201ENST00000304523 SHROOM4Q9ULL8 1493 aa16.13■□□□□ 0.17
LDB2-201ENST00000304523 ZCCHC6Q5VYS8 1495 aaKnown RBP16.01■□□□□ 0.15
LDB2-201ENST00000304523 SUPT5HO00267 1087 aaKnown RBP15.96■□□□□ 0.15
LDB2-201ENST00000304523 CCDC180Q9P1Z9 1646 aa15.92■□□□□ 0.14
LDB2-201ENST00000304523 HRCP23327 699 aa15.86■□□□□ 0.13
LDB2-201ENST00000304523 MYO15BQ96JP2 1530 aa15.82■□□□□ 0.12
LDB2-201ENST00000304523 CHIC1Q5VXU3 224 aa15.76■□□□□ 0.11
LDB2-201ENST00000304523 DCAF1Q9Y4B6 1507 aa15.55■□□□□ 0.08
LDB2-201ENST00000304523 PCGF6Q9BYE7 350 aa15.55■□□□□ 0.08
LDB2-201ENST00000304523 PPARGC1BQ86YN6 1023 aaKnown RBP15.39■□□□□ 0.05
LDB2-201ENST00000304523 DCAF8L2P0C7V8 631 aa15.29■□□□□ 0.04
LDB2-201ENST00000304523 LOC105371045A0A1W2PR82 267 aa15.24■□□□□ 0.03
LDB2-201ENST00000304523 TRIM26Q12899 539 aaPredicted RBP15.24■□□□□ 0.03
LDB2-201ENST00000304523 ABCC9O60706 1549 aa15.19■□□□□ 0.02
LDB2-201ENST00000304523 ZEB1P37275 1124 aaPredicted RBP15.07■□□□□ 0
LDB2-201ENST00000304523 RSF1Q96T23 1441 aaPredicted RBP15□□□□□ -0.01
LDB2-201ENST00000304523 PELP1Q8IZL8 1130 aaKnown RBP14.96□□□□□ -0.02
LDB2-201ENST00000304523 RB1CC1Q8TDY2 1594 aa14.92□□□□□ -0.02
LDB2-201ENST00000304523 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
LDB2-201ENST00000304523 SCRIBQ14160 1630 aa14.87□□□□□ -0.03
LDB2-201ENST00000304523 SCAF1Q9H7N4 1312 aaKnown RBP14.79□□□□□ -0.04
LDB2-201ENST00000304523 FAM9AQ8IZU1 332 aaPredicted RBP14.71□□□□□ -0.05
LDB2-201ENST00000304523 MROH2BQ7Z745 1585 aa14.63□□□□□ -0.07
LDB2-201ENST00000304523 CECR2Q9BXF3 1484 aa14.61□□□□□ -0.07
LDB2-201ENST00000304523 EIF4G1Q04637 1599 aaKnown RBP14.61□□□□□ -0.07
LDB2-201ENST00000304523 NACADO15069 1562 aa14.59□□□□□ -0.07
LDB2-201ENST00000304523 WIZO95785 1651 aa14.58□□□□□ -0.08
LDB2-201ENST00000304523 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
LDB2-201ENST00000304523 ACIN1Q9UKV3 1341 aaKnown RBP14.55□□□□□ -0.08
LDB2-201ENST00000304523 EHMT2Q96KQ7 1210 aa14.51□□□□□ -0.09
LDB2-201ENST00000304523 WRNQ14191 1432 aaPredicted RBP eCLIP14.5□□□□□ -0.09
LDB2-201ENST00000304523 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.5□□□□□ -0.09
LDB2-201ENST00000304523 CCER1Q8TC90 406 aaPredicted RBP14.49□□□□□ -0.09
LDB2-201ENST00000304523 NEUROD1Q13562 356 aa14.48□□□□□ -0.09
LDB2-201ENST00000304523 DIEXFQ68CQ4 756 aaKnown RBP14.42□□□□□ -0.1
LDB2-201ENST00000304523 CENPBP07199 599 aaPredicted RBP14.4□□□□□ -0.1
LDB2-201ENST00000304523 TOP2AP11388 1531 aaKnown RBP14.37□□□□□ -0.11
LDB2-201ENST00000304523 CEP162Q5TB80 1403 aa14.37□□□□□ -0.11
LDB2-201ENST00000304523 GTF3C3Q9Y5Q9 886 aa14.36□□□□□ -0.11
LDB2-201ENST00000304523 CCDC88BA6NC98 1476 aa14.34□□□□□ -0.11
LDB2-201ENST00000304523 ABCC8Q09428 1581 aa14.34□□□□□ -0.11
LDB2-201ENST00000304523 TNIKQ9UKE5 1360 aa14.33□□□□□ -0.12
LDB2-201ENST00000304523 MYT1Q01538 1121 aa14.32□□□□□ -0.12
LDB2-201ENST00000304523 SMARCA2P51531 1590 aa14.31□□□□□ -0.12
LDB2-201ENST00000304523 EEA1Q15075 1411 aa14.3□□□□□ -0.12
LDB2-201ENST00000304523 SMARCA4P51532 1647 aa14.28□□□□□ -0.12
LDB2-201ENST00000304523 SOGA1O94964 1423 aa14.25□□□□□ -0.13
LDB2-201ENST00000304523 ZNF316A6NFI3 1004 aaPredicted RBP14.24□□□□□ -0.13
LDB2-201ENST00000304523 GOLGA3Q08378 1498 aa14.19□□□□□ -0.14
LDB2-201ENST00000304523 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
LDB2-201ENST00000304523 RUSC2Q8N2Y8 1516 aa14.17□□□□□ -0.14
LDB2-201ENST00000304523 TTBK1Q5TCY1 1321 aaPredicted RBP14.15□□□□□ -0.14
LDB2-201ENST00000304523 UNC13AQ9UPW8 1703 aa14.13□□□□□ -0.15
LDB2-201ENST00000304523 KIF21BO75037 1637 aa14.12□□□□□ -0.15
LDB2-201ENST00000304523 UBTFP17480 764 aaKnown RBP14.1□□□□□ -0.15
LDB2-201ENST00000304523 CEP164Q9UPV0 1460 aa14.09□□□□□ -0.15
LDB2-201ENST00000304523 MIER1Q8N108 512 aa14.06□□□□□ -0.16
LDB2-201ENST00000304523 PEG3Q9GZU2 1588 aa14.04□□□□□ -0.16
LDB2-201ENST00000304523 VPS8Q8N3P4 1428 aa14.03□□□□□ -0.16
LDB2-201ENST00000304523 BAZ1BQ9UIG0 1483 aaKnown RBP14.03□□□□□ -0.16
LDB2-201ENST00000304523 YTHDC1Q96MU7 727 aaKnown RBP14.02□□□□□ -0.16
LDB2-201ENST00000304523 CLIP1P30622 1438 aa14.02□□□□□ -0.17
LDB2-201ENST00000304523 SYNJ1O43426 1573 aa14.02□□□□□ -0.17
LDB2-201ENST00000304523 HNRNPUL2Q1KMD3 747 aaKnown RBP13.97□□□□□ -0.17
LDB2-201ENST00000304523 CLSPNQ9HAW4 1339 aa13.95□□□□□ -0.18
LDB2-201ENST00000304523 RAPGEF2Q9Y4G8 1499 aa13.91□□□□□ -0.18
LDB2-201ENST00000304523 BICRAQ9NZM4 1560 aa13.89□□□□□ -0.19
LDB2-201ENST00000304523 APLP2Q06481 763 aa13.87□□□□□ -0.19
LDB2-201ENST00000304523 DHX57Q6P158 1386 aaKnown RBP13.86□□□□□ -0.19
LDB2-201ENST00000304523 TOP2BQ02880 1626 aa13.84□□□□□ -0.19
LDB2-201ENST00000304523 ERICH3Q5RHP9 1530 aa13.84□□□□□ -0.19
LDB2-201ENST00000304523 BIVM-ERCC5R4GMW8 1640 aa13.81□□□□□ -0.2
LDB2-201ENST00000304523 CUX2O14529 1486 aa13.8□□□□□ -0.2
LDB2-201ENST00000304523 ATAD2BQ9ULI0 1458 aa13.8□□□□□ -0.2
LDB2-201ENST00000304523 ARAP1Q96P48 1450 aa13.79□□□□□ -0.2
LDB2-201ENST00000304523 SUPT16HQ9Y5B9 1047 aaKnown RBP13.79□□□□□ -0.2
LDB2-201ENST00000304523 PRXQ9BXM0 1461 aa13.78□□□□□ -0.2
LDB2-201ENST00000304523 RRBP1Q9P2E9 1410 aaKnown RBP13.78□□□□□ -0.2
LDB2-201ENST00000304523 PABPN1Q86U42 306 aaKnown RBP eCLIP13.7□□□□□ -0.22
LDB2-201ENST00000304523 KANK4Q5T7N3 995 aaPredicted RBP13.68□□□□□ -0.22
LDB2-201ENST00000304523 RANGAP1P46060 587 aaPredicted RBP13.65□□□□□ -0.22
LDB2-201ENST00000304523 CCNB3Q8WWL7 1395 aa13.65□□□□□ -0.22
LDB2-201ENST00000304523 TSHZ2Q9NRE2 1034 aa13.65□□□□□ -0.22
LDB2-201ENST00000304523 MAPKBP1O60336 1514 aa13.62□□□□□ -0.23
LDB2-201ENST00000304523 ARHGAP35Q9NRY4 1499 aa13.61□□□□□ -0.23
LDB2-201ENST00000304523 CUX1P39880 1505 aa13.6□□□□□ -0.23
LDB2-201ENST00000304523 KIF27Q86VH2 1401 aa13.59□□□□□ -0.23
LDB2-201ENST00000304523 MAP3K1Q13233 1512 aa13.59□□□□□ -0.23
LDB2-201ENST00000304523 ANP32EQ9BTT0 268 aa13.56□□□□□ -0.24
LDB2-201ENST00000304523 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
LDB2-201ENST00000304523 TIAM1Q13009 1591 aa13.55□□□□□ -0.24
LDB2-201ENST00000304523 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
LDB2-201ENST00000304523 KCNH8Q96L42 1107 aa13.51□□□□□ -0.25
LDB2-201ENST00000304523 WDR97A6NE52 1622 aa13.51□□□□□ -0.25
LDB2-201ENST00000304523 SETD5Q9C0A6 1442 aa13.5□□□□□ -0.25
LDB2-201ENST00000304523 NCAPD3P42695 1498 aa13.49□□□□□ -0.25
LDB2-201ENST00000304523 CFTRP13569 1480 aa13.47□□□□□ -0.25
LDB2-201ENST00000304523 PRDM2Q13029 1718 aa13.47□□□□□ -0.25
LDB2-201ENST00000304523 LRRC9Q6ZRR7 1453 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms