RNA–Protein interactions for RNA: ENST00000302102.9

ATP1A3-201, Transcript of ATPase Na+/K+ transporting subunit alpha 3, humanhuman

TSL 1 (best) BASIC

Gene ATP1A3, Length 3,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP1A3-201ENST00000302102 NISCHQ9Y2I1 1504 aa22.19■■□□□ 1.14
ATP1A3-201ENST00000302102 DCAF8L2P0C7V8 631 aa19.89■□□□□ 0.78
ATP1A3-201ENST00000302102 SHROOM4Q9ULL8 1493 aa19.85■□□□□ 0.77
ATP1A3-201ENST00000302102 SUPT5HO00267 1087 aaKnown RBP19.79■□□□□ 0.76
ATP1A3-201ENST00000302102 EHMT2Q96KQ7 1210 aa18.99■□□□□ 0.63
ATP1A3-201ENST00000302102 CCDC180Q9P1Z9 1646 aa18.94■□□□□ 0.62
ATP1A3-201ENST00000302102 PCGF6Q9BYE7 350 aa18.84■□□□□ 0.61
ATP1A3-201ENST00000302102 ABCC9O60706 1549 aa18.82■□□□□ 0.6
ATP1A3-201ENST00000302102 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
ATP1A3-201ENST00000302102 ZCCHC6Q5VYS8 1495 aaKnown RBP18.54■□□□□ 0.56
ATP1A3-201ENST00000302102 PPARGC1BQ86YN6 1023 aaKnown RBP18.45■□□□□ 0.54
ATP1A3-201ENST00000302102 LOC105371045A0A1W2PR82 267 aa18.44■□□□□ 0.54
ATP1A3-201ENST00000302102 CHIC1Q5VXU3 224 aa18.38■□□□□ 0.53
ATP1A3-201ENST00000302102 TTBK1Q5TCY1 1321 aaPredicted RBP18.32■□□□□ 0.52
ATP1A3-201ENST00000302102 HRCP23327 699 aa18.24■□□□□ 0.51
ATP1A3-201ENST00000302102 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
ATP1A3-201ENST00000302102 PABPN1Q86U42 306 aaKnown RBP eCLIP18.05■□□□□ 0.48
ATP1A3-201ENST00000302102 TRIM41Q8WV44 630 aa18.04■□□□□ 0.48
ATP1A3-201ENST00000302102 DCAF1Q9Y4B6 1507 aa17.94■□□□□ 0.46
ATP1A3-201ENST00000302102 MYO15BQ96JP2 1530 aa17.89■□□□□ 0.46
ATP1A3-201ENST00000302102 NACADO15069 1562 aa17.88■□□□□ 0.45
ATP1A3-201ENST00000302102 RB1CC1Q8TDY2 1594 aa17.85■□□□□ 0.45
ATP1A3-201ENST00000302102 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
ATP1A3-201ENST00000302102 TRIM26Q12899 539 aaPredicted RBP17.8■□□□□ 0.44
ATP1A3-201ENST00000302102 CCER1Q8TC90 406 aaPredicted RBP17.7■□□□□ 0.42
ATP1A3-201ENST00000302102 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.61■□□□□ 0.41
ATP1A3-201ENST00000302102 YTHDC1Q96MU7 727 aaKnown RBP17.53■□□□□ 0.4
ATP1A3-201ENST00000302102 CECR2Q9BXF3 1484 aa17.51■□□□□ 0.39
ATP1A3-201ENST00000302102 UBTFP17480 764 aaKnown RBP17.49■□□□□ 0.39
ATP1A3-201ENST00000302102 ZEB1P37275 1124 aaPredicted RBP17.46■□□□□ 0.39
ATP1A3-201ENST00000302102 RSF1Q96T23 1441 aaPredicted RBP17.38■□□□□ 0.37
ATP1A3-201ENST00000302102 HNRNPUL2Q1KMD3 747 aaKnown RBP17.29■□□□□ 0.36
ATP1A3-201ENST00000302102 MROH2BQ7Z745 1585 aa17.29■□□□□ 0.36
ATP1A3-201ENST00000302102 APLP2Q06481 763 aa17.28■□□□□ 0.36
ATP1A3-201ENST00000302102 UNC13AQ9UPW8 1703 aa17.25■□□□□ 0.35
ATP1A3-201ENST00000302102 BICRAQ9NZM4 1560 aa17.2■□□□□ 0.34
ATP1A3-201ENST00000302102 CENPBP07199 599 aaPredicted RBP17.17■□□□□ 0.34
ATP1A3-201ENST00000302102 DIEXFQ68CQ4 756 aaKnown RBP17.15■□□□□ 0.34
ATP1A3-201ENST00000302102 BAZ1AQ9NRL2 1556 aaPredicted RBP17.12■□□□□ 0.33
ATP1A3-201ENST00000302102 WIZO95785 1651 aa17.12■□□□□ 0.33
ATP1A3-201ENST00000302102 ITGAEP38570 1179 aa17.1■□□□□ 0.33
ATP1A3-201ENST00000302102 SCAF1Q9H7N4 1312 aaKnown RBP17.09■□□□□ 0.33
ATP1A3-201ENST00000302102 GTF3C3Q9Y5Q9 886 aa17.07■□□□□ 0.32
ATP1A3-201ENST00000302102 ATP1B4Q9UN42 357 aaPredicted RBP17.05■□□□□ 0.32
ATP1A3-201ENST00000302102 SMARCA4P51532 1647 aa17.01■□□□□ 0.31
ATP1A3-201ENST00000302102 NEUROD1Q13562 356 aa16.97■□□□□ 0.31
ATP1A3-201ENST00000302102 BAZ1BQ9UIG0 1483 aaKnown RBP16.91■□□□□ 0.3
ATP1A3-201ENST00000302102 PELP1Q8IZL8 1130 aaKnown RBP16.89■□□□□ 0.29
ATP1A3-201ENST00000302102 ACIN1Q9UKV3 1341 aaKnown RBP16.88■□□□□ 0.29
ATP1A3-201ENST00000302102 ATAD2BQ9ULI0 1458 aa16.87■□□□□ 0.29
ATP1A3-201ENST00000302102 EIF4G1Q04637 1599 aaKnown RBP16.85■□□□□ 0.29
ATP1A3-201ENST00000302102 CCDC88BA6NC98 1476 aa16.83■□□□□ 0.28
ATP1A3-201ENST00000302102 CSRNP3Q8WYN3 585 aa16.78■□□□□ 0.28
ATP1A3-201ENST00000302102 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
ATP1A3-201ENST00000302102 DNAJC5BQ9UF47 199 aa16.76■□□□□ 0.27
ATP1A3-201ENST00000302102 SMARCA2P51531 1590 aa16.75■□□□□ 0.27
ATP1A3-201ENST00000302102 ZNF316A6NFI3 1004 aaPredicted RBP16.73■□□□□ 0.27
ATP1A3-201ENST00000302102 MIER1Q8N108 512 aa16.66■□□□□ 0.26
ATP1A3-201ENST00000302102 CC2D2AQ9P2K1 1620 aa16.66■□□□□ 0.26
ATP1A3-201ENST00000302102 BCANQ96GW7 911 aa16.66■□□□□ 0.26
ATP1A3-201ENST00000302102 CNGB1Q14028 1251 aaPredicted RBP16.65■□□□□ 0.26
ATP1A3-201ENST00000302102 ABCC8Q09428 1581 aa16.62■□□□□ 0.25
ATP1A3-201ENST00000302102 NCAPD3P42695 1498 aa16.6■□□□□ 0.25
ATP1A3-201ENST00000302102 P3H3Q8IVL6 736 aa16.56■□□□□ 0.24
ATP1A3-201ENST00000302102 SOGA1O94964 1423 aa16.54■□□□□ 0.24
ATP1A3-201ENST00000302102 FAM50AQ14320 339 aaKnown RBP16.52■□□□□ 0.24
ATP1A3-201ENST00000302102 CEP162Q5TB80 1403 aa16.52■□□□□ 0.24
ATP1A3-201ENST00000302102 PEG3Q9GZU2 1588 aa16.49■□□□□ 0.23
ATP1A3-201ENST00000302102 HIRIP3Q9BW71 556 aaPredicted RBP16.48■□□□□ 0.23
ATP1A3-201ENST00000302102 WRNQ14191 1432 aaPredicted RBP eCLIP16.47■□□□□ 0.23
ATP1A3-201ENST00000302102 HMGXB3Q12766 1538 aa16.42■□□□□ 0.22
ATP1A3-201ENST00000302102 NESP48681 1621 aa16.41■□□□□ 0.22
ATP1A3-201ENST00000302102 CADPSQ9ULU8 1353 aa16.41■□□□□ 0.22
ATP1A3-201ENST00000302102 ARID3CA6NKF2 412 aa16.37■□□□□ 0.21
ATP1A3-201ENST00000302102 POLR3GLQ9BT43 218 aa16.36■□□□□ 0.21
ATP1A3-201ENST00000302102 NEFLP07196 543 aa16.36■□□□□ 0.21
ATP1A3-201ENST00000302102 RUSC2Q8N2Y8 1516 aa16.35■□□□□ 0.21
ATP1A3-201ENST00000302102 DDX10Q13206 875 aaKnown RBP16.32■□□□□ 0.2
ATP1A3-201ENST00000302102 CLIP1P30622 1438 aa16.32■□□□□ 0.2
ATP1A3-201ENST00000302102 CFTRP13569 1480 aa16.28■□□□□ 0.2
ATP1A3-201ENST00000302102 TRIM52Q96A61 297 aa16.26■□□□□ 0.19
ATP1A3-201ENST00000302102 FANCD2Q9BXW9 1451 aa16.25■□□□□ 0.19
ATP1A3-201ENST00000302102 TNIKQ9UKE5 1360 aa16.24■□□□□ 0.19
ATP1A3-201ENST00000302102 SYNJ1O43426 1573 aa16.21■□□□□ 0.19
ATP1A3-201ENST00000302102 KANK4Q5T7N3 995 aaPredicted RBP16.21■□□□□ 0.19
ATP1A3-201ENST00000302102 FKBP8Q14318 412 aa16.2■□□□□ 0.18
ATP1A3-201ENST00000302102 ERICH6Q7L0X2 663 aa16.19■□□□□ 0.18
ATP1A3-201ENST00000302102 ERCC6Q03468 1493 aa16.18■□□□□ 0.18
ATP1A3-201ENST00000302102 SENP3-EIF4A1A0A087X0R7 540 aa16.18■□□□□ 0.18
ATP1A3-201ENST00000302102 GOLGA3Q08378 1498 aa16.17■□□□□ 0.18
ATP1A3-201ENST00000302102 PDS5BQ9NTI5 1447 aa16.16■□□□□ 0.18
ATP1A3-201ENST00000302102 SIN3AQ96ST3 1273 aa16.16■□□□□ 0.18
ATP1A3-201ENST00000302102 KCNH8Q96L42 1107 aa16.15■□□□□ 0.18
ATP1A3-201ENST00000302102 IRX6P78412 446 aaPredicted RBP16.15■□□□□ 0.18
ATP1A3-201ENST00000302102 CEP164Q9UPV0 1460 aa16.13■□□□□ 0.17
ATP1A3-201ENST00000302102 FBLN2P98095 1184 aa16.12■□□□□ 0.17
ATP1A3-201ENST00000302102 CUX1P39880 1505 aa16.11■□□□□ 0.17
ATP1A3-201ENST00000302102 CUX2O14529 1486 aa16.11■□□□□ 0.17
ATP1A3-201ENST00000302102 TDRD9Q8NDG6 1382 aaKnown RBP16.1■□□□□ 0.17
ATP1A3-201ENST00000302102 RAD54L2Q9Y4B4 1467 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms