RNA–Protein interactions for RNA: ENST00000300590.7

SNX20-201, Transcript of sorting nexin 20, humanhuman

TSL 2 BASIC

Gene SNX20, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-201ENST00000300590 NISCHQ9Y2I1 1504 aa20.31■□□□□ 0.84
SNX20-201ENST00000300590 SHROOM4Q9ULL8 1493 aa18.56■□□□□ 0.56
SNX20-201ENST00000300590 SUPT5HO00267 1087 aaKnown RBP18.54■□□□□ 0.56
SNX20-201ENST00000300590 HRCP23327 699 aa18.53■□□□□ 0.56
SNX20-201ENST00000300590 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
SNX20-201ENST00000300590 PCGF6Q9BYE7 350 aa18.39■□□□□ 0.53
SNX20-201ENST00000300590 MYO15BQ96JP2 1530 aa18.02■□□□□ 0.47
SNX20-201ENST00000300590 CHIC1Q5VXU3 224 aa18■□□□□ 0.47
SNX20-201ENST00000300590 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
SNX20-201ENST00000300590 LOC105371045A0A1W2PR82 267 aa17.78■□□□□ 0.44
SNX20-201ENST00000300590 DCAF8L2P0C7V8 631 aa17.65■□□□□ 0.42
SNX20-201ENST00000300590 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
SNX20-201ENST00000300590 TRIM26Q12899 539 aaPredicted RBP17.57■□□□□ 0.4
SNX20-201ENST00000300590 DCAF1Q9Y4B6 1507 aa17.45■□□□□ 0.38
SNX20-201ENST00000300590 EHMT2Q96KQ7 1210 aa17.36■□□□□ 0.37
SNX20-201ENST00000300590 ZEB1P37275 1124 aaPredicted RBP17.35■□□□□ 0.37
SNX20-201ENST00000300590 MYT1Q01538 1121 aa17.3■□□□□ 0.36
SNX20-201ENST00000300590 FAM9AQ8IZU1 332 aaPredicted RBP17.24■□□□□ 0.35
SNX20-201ENST00000300590 ZCCHC6Q5VYS8 1495 aaKnown RBP17.21■□□□□ 0.35
SNX20-201ENST00000300590 NEUROD1Q13562 356 aa17.18■□□□□ 0.34
SNX20-201ENST00000300590 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
SNX20-201ENST00000300590 ACIN1Q9UKV3 1341 aaKnown RBP17.14■□□□□ 0.33
SNX20-201ENST00000300590 GTF3C3Q9Y5Q9 886 aa17.13■□□□□ 0.33
SNX20-201ENST00000300590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.04■□□□□ 0.32
SNX20-201ENST00000300590 TRIM41Q8WV44 630 aa17.01■□□□□ 0.31
SNX20-201ENST00000300590 CCER1Q8TC90 406 aaPredicted RBP16.98■□□□□ 0.31
SNX20-201ENST00000300590 CENPBP07199 599 aaPredicted RBP16.96■□□□□ 0.31
SNX20-201ENST00000300590 DIEXFQ68CQ4 756 aaKnown RBP16.93■□□□□ 0.3
SNX20-201ENST00000300590 TTBK1Q5TCY1 1321 aaPredicted RBP16.9■□□□□ 0.3
SNX20-201ENST00000300590 YTHDC1Q96MU7 727 aaKnown RBP16.88■□□□□ 0.29
SNX20-201ENST00000300590 ZNF316A6NFI3 1004 aaPredicted RBP16.52■□□□□ 0.24
SNX20-201ENST00000300590 MIER1Q8N108 512 aa16.51■□□□□ 0.23
SNX20-201ENST00000300590 RSF1Q96T23 1441 aaPredicted RBP16.47■□□□□ 0.23
SNX20-201ENST00000300590 RB1CC1Q8TDY2 1594 aa16.39■□□□□ 0.21
SNX20-201ENST00000300590 HNRNPUL2Q1KMD3 747 aaKnown RBP16.34■□□□□ 0.21
SNX20-201ENST00000300590 ABCC9O60706 1549 aa16.32■□□□□ 0.2
SNX20-201ENST00000300590 BCL11AQ9H165 835 aa16.28■□□□□ 0.2
SNX20-201ENST00000300590 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
SNX20-201ENST00000300590 SCRIBQ14160 1630 aa16.23■□□□□ 0.19
SNX20-201ENST00000300590 SUPT16HQ9Y5B9 1047 aaKnown RBP16.2■□□□□ 0.18
SNX20-201ENST00000300590 ANP32EQ9BTT0 268 aa16.14■□□□□ 0.17
SNX20-201ENST00000300590 TSHZ2Q9NRE2 1034 aa16.13■□□□□ 0.17
SNX20-201ENST00000300590 BCANQ96GW7 911 aa16.12■□□□□ 0.17
SNX20-201ENST00000300590 CEP162Q5TB80 1403 aa16.11■□□□□ 0.17
SNX20-201ENST00000300590 RANGAP1P46060 587 aaPredicted RBP16.09■□□□□ 0.17
SNX20-201ENST00000300590 CECR2Q9BXF3 1484 aa16.08■□□□□ 0.16
SNX20-201ENST00000300590 CSRNP3Q8WYN3 585 aa16.06■□□□□ 0.16
SNX20-201ENST00000300590 WRNQ14191 1432 aaPredicted RBP eCLIP16.01■□□□□ 0.15
SNX20-201ENST00000300590 MROH2BQ7Z745 1585 aa15.97■□□□□ 0.15
SNX20-201ENST00000300590 SOGA1O94964 1423 aa15.97■□□□□ 0.15
SNX20-201ENST00000300590 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.15
SNX20-201ENST00000300590 APLP2Q06481 763 aa15.95■□□□□ 0.14
SNX20-201ENST00000300590 ABCC8Q09428 1581 aa15.94■□□□□ 0.14
SNX20-201ENST00000300590 KCNH8Q96L42 1107 aa15.93■□□□□ 0.14
SNX20-201ENST00000300590 TNIKQ9UKE5 1360 aa15.92■□□□□ 0.14
SNX20-201ENST00000300590 WIZO95785 1651 aa15.91■□□□□ 0.14
SNX20-201ENST00000300590 FKBP8Q14318 412 aa15.89■□□□□ 0.13
SNX20-201ENST00000300590 CLSPNQ9HAW4 1339 aa15.89■□□□□ 0.13
SNX20-201ENST00000300590 RUSC2Q8N2Y8 1516 aa15.88■□□□□ 0.13
SNX20-201ENST00000300590 PRKCSHP14314 528 aaPredicted RBP15.84■□□□□ 0.13
SNX20-201ENST00000300590 ITGAEP38570 1179 aa15.84■□□□□ 0.13
SNX20-201ENST00000300590 RBM19Q9Y4C8 960 aaKnown RBP15.78■□□□□ 0.12
SNX20-201ENST00000300590 NEFLP07196 543 aa15.74■□□□□ 0.11
SNX20-201ENST00000300590 TRIM52Q96A61 297 aa15.71■□□□□ 0.11
SNX20-201ENST00000300590 GOLGA3Q08378 1498 aa15.7■□□□□ 0.1
SNX20-201ENST00000300590 CLIP1P30622 1438 aa15.7■□□□□ 0.1
SNX20-201ENST00000300590 DDX10Q13206 875 aaKnown RBP15.7■□□□□ 0.1
SNX20-201ENST00000300590 DHX57Q6P158 1386 aaKnown RBP15.68■□□□□ 0.1
SNX20-201ENST00000300590 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
SNX20-201ENST00000300590 ERICH6Q7L0X2 663 aa15.65■□□□□ 0.1
SNX20-201ENST00000300590 EIF4G1Q04637 1599 aaKnown RBP15.62■□□□□ 0.09
SNX20-201ENST00000300590 MSH5O43196 834 aa15.62■□□□□ 0.09
SNX20-201ENST00000300590 BAZ1AQ9NRL2 1556 aaPredicted RBP15.61■□□□□ 0.09
SNX20-201ENST00000300590 EEA1Q15075 1411 aa15.61■□□□□ 0.09
SNX20-201ENST00000300590 IRX6P78412 446 aaPredicted RBP15.6■□□□□ 0.09
SNX20-201ENST00000300590 VPS8Q8N3P4 1428 aa15.59■□□□□ 0.09
SNX20-201ENST00000300590 KANK4Q5T7N3 995 aaPredicted RBP15.58■□□□□ 0.09
SNX20-201ENST00000300590 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.08
SNX20-201ENST00000300590 SIN3AQ96ST3 1273 aa15.5■□□□□ 0.07
SNX20-201ENST00000300590 RAPGEF2Q9Y4G8 1499 aa15.47■□□□□ 0.07
SNX20-201ENST00000300590 SMARCA2P51531 1590 aa15.46■□□□□ 0.07
SNX20-201ENST00000300590 CDK11AQ9UQ88 783 aaPredicted RBP15.46■□□□□ 0.07
SNX20-201ENST00000300590 TOP2AP11388 1531 aaKnown RBP15.46■□□□□ 0.07
SNX20-201ENST00000300590 NACADO15069 1562 aa15.46■□□□□ 0.07
SNX20-201ENST00000300590 ANP32CO43423 234 aa15.46■□□□□ 0.06
SNX20-201ENST00000300590 KIF21BO75037 1637 aa15.4■□□□□ 0.06
SNX20-201ENST00000300590 DEKP35659 375 aaKnown RBP15.39■□□□□ 0.05
SNX20-201ENST00000300590 HNRNPUQ00839 825 aaKnown RBP eCLIP15.39■□□□□ 0.05
SNX20-201ENST00000300590 NBR1Q14596 966 aa15.39■□□□□ 0.05
SNX20-201ENST00000300590 PPP1R15AO75807 674 aaPredicted RBP15.37■□□□□ 0.05
SNX20-201ENST00000300590 RAB3GAP2Q9H2M9 1393 aa15.35■□□□□ 0.05
SNX20-201ENST00000300590 FAM50AQ14320 339 aaKnown RBP15.35■□□□□ 0.05
SNX20-201ENST00000300590 CCNB3Q8WWL7 1395 aa15.34■□□□□ 0.05
SNX20-201ENST00000300590 FANCIQ9NVI1 1328 aa15.34■□□□□ 0.05
SNX20-201ENST00000300590 PABPN1Q86U42 306 aaKnown RBP eCLIP15.33■□□□□ 0.04
SNX20-201ENST00000300590 ATP1B4Q9UN42 357 aaPredicted RBP15.31■□□□□ 0.04
SNX20-201ENST00000300590 SYNJ1O43426 1573 aa15.3■□□□□ 0.04
SNX20-201ENST00000300590 CCER2I3L3R5 266 aa15.3■□□□□ 0.04
SNX20-201ENST00000300590 ANO8Q9HCE9 1232 aaPredicted RBP15.3■□□□□ 0.04
SNX20-201ENST00000300590 WDR97A6NE52 1622 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms