RNA–Protein interactions for RNA: ENST00000299162.9

FOXN4-201, Transcript of forkhead box N4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXN4, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4-201ENST00000299162 NISCHQ9Y2I1 1504 aa20.84■□□□□ 0.93
FOXN4-201ENST00000299162 SHROOM4Q9ULL8 1493 aa18.29■□□□□ 0.52
FOXN4-201ENST00000299162 DCAF8L2P0C7V8 631 aa18.18■□□□□ 0.5
FOXN4-201ENST00000299162 SUPT5HO00267 1087 aaKnown RBP17.87■□□□□ 0.45
FOXN4-201ENST00000299162 ZCCHC6Q5VYS8 1495 aaKnown RBP17.52■□□□□ 0.4
FOXN4-201ENST00000299162 CCDC180Q9P1Z9 1646 aa17.52■□□□□ 0.39
FOXN4-201ENST00000299162 ABCC9O60706 1549 aa17.04■□□□□ 0.32
FOXN4-201ENST00000299162 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
FOXN4-201ENST00000299162 SCRIBQ14160 1630 aa16.86■□□□□ 0.29
FOXN4-201ENST00000299162 DCAF1Q9Y4B6 1507 aa16.8■□□□□ 0.28
FOXN4-201ENST00000299162 MYO15BQ96JP2 1530 aa16.77■□□□□ 0.28
FOXN4-201ENST00000299162 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
FOXN4-201ENST00000299162 LOC105371045A0A1W2PR82 267 aa16.69■□□□□ 0.26
FOXN4-201ENST00000299162 FAM9AQ8IZU1 332 aaPredicted RBP16.63■□□□□ 0.25
FOXN4-201ENST00000299162 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
FOXN4-201ENST00000299162 PCGF6Q9BYE7 350 aa16.5■□□□□ 0.23
FOXN4-201ENST00000299162 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
FOXN4-201ENST00000299162 CECR2Q9BXF3 1484 aa16.48■□□□□ 0.23
FOXN4-201ENST00000299162 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.22
FOXN4-201ENST00000299162 NACADO15069 1562 aa16.39■□□□□ 0.21
FOXN4-201ENST00000299162 PPARGC1BQ86YN6 1023 aaKnown RBP16.36■□□□□ 0.21
FOXN4-201ENST00000299162 RB1CC1Q8TDY2 1594 aa16.34■□□□□ 0.21
FOXN4-201ENST00000299162 PELP1Q8IZL8 1130 aaKnown RBP16.34■□□□□ 0.21
FOXN4-201ENST00000299162 MROH2BQ7Z745 1585 aa16.31■□□□□ 0.2
FOXN4-201ENST00000299162 HRCP23327 699 aa16.3■□□□□ 0.2
FOXN4-201ENST00000299162 WIZO95785 1651 aa16.2■□□□□ 0.18
FOXN4-201ENST00000299162 TTBK1Q5TCY1 1321 aaPredicted RBP16.09■□□□□ 0.17
FOXN4-201ENST00000299162 BAZ1AQ9NRL2 1556 aaPredicted RBP16■□□□□ 0.15
FOXN4-201ENST00000299162 TRIM26Q12899 539 aaPredicted RBP15.96■□□□□ 0.15
FOXN4-201ENST00000299162 UNC13AQ9UPW8 1703 aa15.91■□□□□ 0.14
FOXN4-201ENST00000299162 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
FOXN4-201ENST00000299162 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
FOXN4-201ENST00000299162 RANGAP1P46060 587 aaPredicted RBP15.89■□□□□ 0.13
FOXN4-201ENST00000299162 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
FOXN4-201ENST00000299162 MYT1Q01538 1121 aa15.84■□□□□ 0.13
FOXN4-201ENST00000299162 UBTFP17480 764 aaKnown RBP15.84■□□□□ 0.13
FOXN4-201ENST00000299162 TOP2AP11388 1531 aaKnown RBP15.8■□□□□ 0.12
FOXN4-201ENST00000299162 BICRAQ9NZM4 1560 aa15.79■□□□□ 0.12
FOXN4-201ENST00000299162 SOGA1O94964 1423 aa15.75■□□□□ 0.11
FOXN4-201ENST00000299162 SMARCA2P51531 1590 aa15.75■□□□□ 0.11
FOXN4-201ENST00000299162 RUSC2Q8N2Y8 1516 aa15.69■□□□□ 0.1
FOXN4-201ENST00000299162 CSRNP3Q8WYN3 585 aa15.67■□□□□ 0.1
FOXN4-201ENST00000299162 BAZ1BQ9UIG0 1483 aaKnown RBP15.64■□□□□ 0.09
FOXN4-201ENST00000299162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.63■□□□□ 0.09
FOXN4-201ENST00000299162 SCAF1Q9H7N4 1312 aaKnown RBP15.63■□□□□ 0.09
FOXN4-201ENST00000299162 ATAD2BQ9ULI0 1458 aa15.62■□□□□ 0.09
FOXN4-201ENST00000299162 WRNQ14191 1432 aaPredicted RBP eCLIP15.6■□□□□ 0.09
FOXN4-201ENST00000299162 EIF4G1Q04637 1599 aaKnown RBP15.59■□□□□ 0.09
FOXN4-201ENST00000299162 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
FOXN4-201ENST00000299162 CEP162Q5TB80 1403 aa15.52■□□□□ 0.08
FOXN4-201ENST00000299162 SYNJ1O43426 1573 aa15.43■□□□□ 0.06
FOXN4-201ENST00000299162 HNRNPUL2Q1KMD3 747 aaKnown RBP15.43■□□□□ 0.06
FOXN4-201ENST00000299162 ZEB1P37275 1124 aaPredicted RBP15.4■□□□□ 0.06
FOXN4-201ENST00000299162 TNIKQ9UKE5 1360 aa15.4■□□□□ 0.06
FOXN4-201ENST00000299162 APLP2Q06481 763 aa15.4■□□□□ 0.06
FOXN4-201ENST00000299162 PEG3Q9GZU2 1588 aa15.37■□□□□ 0.05
FOXN4-201ENST00000299162 GOLGA3Q08378 1498 aa15.36■□□□□ 0.05
FOXN4-201ENST00000299162 EEA1Q15075 1411 aa15.33■□□□□ 0.04
FOXN4-201ENST00000299162 RAPGEF2Q9Y4G8 1499 aa15.32■□□□□ 0.04
FOXN4-201ENST00000299162 CLIP1P30622 1438 aa15.31■□□□□ 0.04
FOXN4-201ENST00000299162 CEP164Q9UPV0 1460 aa15.28■□□□□ 0.04
FOXN4-201ENST00000299162 ATP1B4Q9UN42 357 aaPredicted RBP15.25■□□□□ 0.03
FOXN4-201ENST00000299162 NCAPD3P42695 1498 aa15.25■□□□□ 0.03
FOXN4-201ENST00000299162 ITGAEP38570 1179 aa15.22■□□□□ 0.03
FOXN4-201ENST00000299162 P3H3Q8IVL6 736 aa15.21■□□□□ 0.03
FOXN4-201ENST00000299162 NEUROD1Q13562 356 aa15.2■□□□□ 0.02
FOXN4-201ENST00000299162 GTF3C3Q9Y5Q9 886 aa15.2■□□□□ 0.02
FOXN4-201ENST00000299162 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
FOXN4-201ENST00000299162 PRKCSHP14314 528 aaPredicted RBP15.16■□□□□ 0.02
FOXN4-201ENST00000299162 CUX1P39880 1505 aa15.16■□□□□ 0.02
FOXN4-201ENST00000299162 YTHDC1Q96MU7 727 aaKnown RBP15.14■□□□□ 0.01
FOXN4-201ENST00000299162 TOP2BQ02880 1626 aa15.13■□□□□ 0.01
FOXN4-201ENST00000299162 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
FOXN4-201ENST00000299162 KANK4Q5T7N3 995 aaPredicted RBP15.12■□□□□ 0.01
FOXN4-201ENST00000299162 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
FOXN4-201ENST00000299162 ACIN1Q9UKV3 1341 aaKnown RBP15.12■□□□□ 0.01
FOXN4-201ENST00000299162 CFTRP13569 1480 aa15.11■□□□□ 0.01
FOXN4-201ENST00000299162 CUX2O14529 1486 aa15.11■□□□□ 0.01
FOXN4-201ENST00000299162 CADPSQ9ULU8 1353 aa15.1■□□□□ 0.01
FOXN4-201ENST00000299162 VPS8Q8N3P4 1428 aa15.1■□□□□ 0.01
FOXN4-201ENST00000299162 BCL11AQ9H165 835 aa15.09■□□□□ 0.01
FOXN4-201ENST00000299162 CC2D2AQ9P2K1 1620 aa15.08■□□□□ 0.01
FOXN4-201ENST00000299162 KIF21BO75037 1637 aa15.07■□□□□ 0
FOXN4-201ENST00000299162 NESP48681 1621 aa15.06■□□□□ 0
FOXN4-201ENST00000299162 DIEXFQ68CQ4 756 aaKnown RBP15.02■□□□□ -0
FOXN4-201ENST00000299162 CENPBP07199 599 aaPredicted RBP15.02□□□□□ -0.01
FOXN4-201ENST00000299162 PRXQ9BXM0 1461 aa15□□□□□ -0.01
FOXN4-201ENST00000299162 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
FOXN4-201ENST00000299162 IGF1RP08069 1367 aa14.99□□□□□ -0.01
FOXN4-201ENST00000299162 RAD54L2Q9Y4B4 1467 aa14.99□□□□□ -0.01
FOXN4-201ENST00000299162 BIVM-ERCC5R4GMW8 1640 aa14.98□□□□□ -0.01
FOXN4-201ENST00000299162 ARAP1Q96P48 1450 aa14.98□□□□□ -0.01
FOXN4-201ENST00000299162 CARMIL1Q5VZK9 1371 aa14.98□□□□□ -0.01
FOXN4-201ENST00000299162 FANCD2Q9BXW9 1451 aa14.98□□□□□ -0.01
FOXN4-201ENST00000299162 FAM50AQ14320 339 aaKnown RBP14.94□□□□□ -0.02
FOXN4-201ENST00000299162 ARID3CA6NKF2 412 aa14.93□□□□□ -0.02
FOXN4-201ENST00000299162 TDRD9Q8NDG6 1382 aaKnown RBP14.92□□□□□ -0.02
FOXN4-201ENST00000299162 ARHGAP35Q9NRY4 1499 aa14.88□□□□□ -0.03
FOXN4-201ENST00000299162 ZNF316A6NFI3 1004 aaPredicted RBP14.87□□□□□ -0.03
FOXN4-201ENST00000299162 ERICH3Q5RHP9 1530 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms