RNA–Protein interactions for RNA: ENST00000295911.6

CLRN1-201, Transcript of clarin 1, humanhuman

TSL 1 (best) BASIC

Gene CLRN1, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-201ENST00000295911 AEBP2Q6ZN18 517 aaPredicted RBP25.39■■□□□ 1.66
CLRN1-201ENST00000295911 CHIC1Q5VXU3 224 aa24.21■■□□□ 1.47
CLRN1-201ENST00000295911 SENP3Q9H4L4 574 aaPredicted RBP21.55■■□□□ 1.04
CLRN1-201ENST00000295911 PHF23Q9BUL5 403 aaPredicted RBP21.34■■□□□ 1.01
CLRN1-201ENST00000295911 FOXD1Q16676 465 aa20.13■□□□□ 0.81
CLRN1-201ENST00000295911 NISCHQ9Y2I1 1504 aa20.13■□□□□ 0.81
CLRN1-201ENST00000295911 PLPPR3Q6T4P5 718 aa19.39■□□□□ 0.69
CLRN1-201ENST00000295911 PPP6R1Q9UPN7 881 aa18.98■□□□□ 0.63
CLRN1-201ENST00000295911 ADRA2BP18089 450 aa18.91■□□□□ 0.62
CLRN1-201ENST00000295911 PIAS4Q8N2W9 510 aaPredicted RBP18.82■□□□□ 0.6
CLRN1-201ENST00000295911 MSH5O43196 834 aa18.7■□□□□ 0.58
CLRN1-201ENST00000295911 POTEDQ86YR6 584 aa18.05■□□□□ 0.48
CLRN1-201ENST00000295911 CCDC180Q9P1Z9 1646 aa17.49■□□□□ 0.39
CLRN1-201ENST00000295911 MAPK8IP2Q13387 824 aaPredicted RBP17.35■□□□□ 0.37
CLRN1-201ENST00000295911 SCAF1Q9H7N4 1312 aaKnown RBP17.2■□□□□ 0.34
CLRN1-201ENST00000295911 DMRT2Q9Y5R5 561 aa17.13■□□□□ 0.33
CLRN1-201ENST00000295911 PPP4R3CPQ6ZMV5 832 aa17.05■□□□□ 0.32
CLRN1-201ENST00000295911 ZCCHC6Q5VYS8 1495 aaKnown RBP16.95■□□□□ 0.3
CLRN1-201ENST00000295911 DCAF1Q9Y4B6 1507 aa16.68■□□□□ 0.26
CLRN1-201ENST00000295911 CNKSR2Q8WXI2 1034 aa16.66■□□□□ 0.26
CLRN1-201ENST00000295911 SHROOM4Q9ULL8 1493 aa16.57■□□□□ 0.24
CLRN1-201ENST00000295911 HOXD11P31277 338 aaPredicted RBP16.56■□□□□ 0.24
CLRN1-201ENST00000295911 DCAF8L2P0C7V8 631 aa16.49■□□□□ 0.23
CLRN1-201ENST00000295911 RNF216Q9NWF9 866 aaPredicted RBP16.47■□□□□ 0.23
CLRN1-201ENST00000295911 DCAF8L1A6NGE4 600 aa16.44■□□□□ 0.22
CLRN1-201ENST00000295911 NCBP3Q53F19 620 aaKnown RBP16.38■□□□□ 0.21
CLRN1-201ENST00000295911 MYO15BQ96JP2 1530 aa16.38■□□□□ 0.21
CLRN1-201ENST00000295911 NPM3O75607 178 aaKnown RBP16.21■□□□□ 0.19
CLRN1-201ENST00000295911 NACADO15069 1562 aa16.19■□□□□ 0.18
CLRN1-201ENST00000295911 ABCC9O60706 1549 aa16.14■□□□□ 0.17
CLRN1-201ENST00000295911 SUPT5HO00267 1087 aaKnown RBP16.13■□□□□ 0.17
CLRN1-201ENST00000295911 KCNA4P22459 653 aa16.06■□□□□ 0.16
CLRN1-201ENST00000295911 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
CLRN1-201ENST00000295911 RNF39Q9H2S5 420 aa16.02■□□□□ 0.15
CLRN1-201ENST00000295911 CACNB1Q02641 598 aaPredicted RBP15.98■□□□□ 0.15
CLRN1-201ENST00000295911 RB1CC1Q8TDY2 1594 aa15.97■□□□□ 0.15
CLRN1-201ENST00000295911 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
CLRN1-201ENST00000295911 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
CLRN1-201ENST00000295911 C1QBPQ07021 282 aaKnown RBP15.76■□□□□ 0.11
CLRN1-201ENST00000295911 RSF1Q96T23 1441 aaPredicted RBP15.71■□□□□ 0.1
CLRN1-201ENST00000295911 UNC13AQ9UPW8 1703 aa15.71■□□□□ 0.1
CLRN1-201ENST00000295911 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
CLRN1-201ENST00000295911 BAZ1AQ9NRL2 1556 aaPredicted RBP15.54■□□□□ 0.08
CLRN1-201ENST00000295911 MROH2BQ7Z745 1585 aa15.54■□□□□ 0.08
CLRN1-201ENST00000295911 U3KPZ7 1027 aaPredicted RBP15.5■□□□□ 0.07
CLRN1-201ENST00000295911 WIZO95785 1651 aa15.47■□□□□ 0.07
CLRN1-201ENST00000295911 SLC4A2P04920 1241 aa15.46■□□□□ 0.07
CLRN1-201ENST00000295911 BICRAQ9NZM4 1560 aa15.44■□□□□ 0.06
CLRN1-201ENST00000295911 SMARCA4P51532 1647 aa15.42■□□□□ 0.06
CLRN1-201ENST00000295911 TOP2AP11388 1531 aaKnown RBP15.31■□□□□ 0.04
CLRN1-201ENST00000295911 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLRN1-201ENST00000295911 SPINK5Q9NQ38 1064 aaPredicted RBP15.25■□□□□ 0.03
CLRN1-201ENST00000295911 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
CLRN1-201ENST00000295911 TRIM41Q8WV44 630 aa15.18■□□□□ 0.02
CLRN1-201ENST00000295911 CAPN15O75808 1086 aa15.17■□□□□ 0.02
CLRN1-201ENST00000295911 SMARCA2P51531 1590 aa15.17■□□□□ 0.02
CLRN1-201ENST00000295911 EIF4G1Q04637 1599 aaKnown RBP15.16■□□□□ 0.02
CLRN1-201ENST00000295911 SLC4A1APQ9BWU0 796 aaKnown RBP15.16■□□□□ 0.02
CLRN1-201ENST00000295911 CCDC88BA6NC98 1476 aa15.14■□□□□ 0.01
CLRN1-201ENST00000295911 DSG3P32926 999 aa15.07■□□□□ 0
CLRN1-201ENST00000295911 ATAD2BQ9ULI0 1458 aa15.06■□□□□ 0
CLRN1-201ENST00000295911 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.02■□□□□ -0
CLRN1-201ENST00000295911 HNRNPUL2Q1KMD3 747 aaKnown RBP15.02■□□□□ -0
CLRN1-201ENST00000295911 LOC105371045A0A1W2PR82 267 aa15.01□□□□□ -0.01
CLRN1-201ENST00000295911 BAZ1BQ9UIG0 1483 aaKnown RBP15.01□□□□□ -0.01
CLRN1-201ENST00000295911 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
CLRN1-201ENST00000295911 APLP2Q06481 763 aa14.97□□□□□ -0.01
CLRN1-201ENST00000295911 SAMD1Q6SPF0 538 aaPredicted RBP14.97□□□□□ -0.01
CLRN1-201ENST00000295911 MYCNP04198 464 aaPredicted RBP14.95□□□□□ -0.02
CLRN1-201ENST00000295911 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
CLRN1-201ENST00000295911 ABCC8Q09428 1581 aa14.91□□□□□ -0.02
CLRN1-201ENST00000295911 ZNF219Q9P2Y4 722 aaPredicted RBP14.9□□□□□ -0.02
CLRN1-201ENST00000295911 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
CLRN1-201ENST00000295911 FOXD4L1Q9NU39 408 aa14.89□□□□□ -0.03
CLRN1-201ENST00000295911 FAM9AQ8IZU1 332 aaPredicted RBP14.86□□□□□ -0.03
CLRN1-201ENST00000295911 ABCB7O75027 752 aa14.85□□□□□ -0.03
CLRN1-201ENST00000295911 EEA1Q15075 1411 aa14.81□□□□□ -0.04
CLRN1-201ENST00000295911 WRNQ14191 1432 aaPredicted RBP eCLIP14.79□□□□□ -0.04
CLRN1-201ENST00000295911 ZBTB22O15209 634 aa14.79□□□□□ -0.04
CLRN1-201ENST00000295911 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
CLRN1-201ENST00000295911 PRDM2Q13029 1718 aa14.73□□□□□ -0.05
CLRN1-201ENST00000295911 SYNJ1O43426 1573 aa14.72□□□□□ -0.05
CLRN1-201ENST00000295911 PCGF6Q9BYE7 350 aa14.68□□□□□ -0.06
CLRN1-201ENST00000295911 SOGA1O94964 1423 aa14.67□□□□□ -0.06
CLRN1-201ENST00000295911 ATF5Q9Y2D1 282 aaPredicted RBP14.67□□□□□ -0.06
CLRN1-201ENST00000295911 TOP2BQ02880 1626 aa14.67□□□□□ -0.06
CLRN1-201ENST00000295911 BIVM-ERCC5R4GMW8 1640 aa14.67□□□□□ -0.06
CLRN1-201ENST00000295911 TRIM26Q12899 539 aaPredicted RBP14.66□□□□□ -0.06
CLRN1-201ENST00000295911 CC2D2AQ9P2K1 1620 aa14.66□□□□□ -0.06
CLRN1-201ENST00000295911 CSRNP3Q8WYN3 585 aa14.66□□□□□ -0.06
CLRN1-201ENST00000295911 CFTRP13569 1480 aa14.64□□□□□ -0.07
CLRN1-201ENST00000295911 POLA2Q14181 598 aa14.61□□□□□ -0.07
CLRN1-201ENST00000295911 KIF21BO75037 1637 aa14.6□□□□□ -0.07
CLRN1-201ENST00000295911 RUSC2Q8N2Y8 1516 aa14.59□□□□□ -0.07
CLRN1-201ENST00000295911 TNIKQ9UKE5 1360 aa14.59□□□□□ -0.07
CLRN1-201ENST00000295911 GOLGA3Q08378 1498 aa14.58□□□□□ -0.08
CLRN1-201ENST00000295911 CEP164Q9UPV0 1460 aa14.56□□□□□ -0.08
CLRN1-201ENST00000295911 HRCP23327 699 aa14.55□□□□□ -0.08
CLRN1-201ENST00000295911 CADPSQ9ULU8 1353 aa14.53□□□□□ -0.08
CLRN1-201ENST00000295911 CUX1P39880 1505 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms