RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 CHIC1Q5VXU3 224 aa7.76□□□□□ -1.17
HERC4-201ENST00000277817 AEBP2Q6ZN18 517 aaPredicted RBP7.47□□□□□ -1.21
HERC4-201ENST00000277817 PHF23Q9BUL5 403 aaPredicted RBP7.03□□□□□ -1.28
HERC4-201ENST00000277817 NISCHQ9Y2I1 1504 aa6.69□□□□□ -1.34
HERC4-201ENST00000277817 CCDC180Q9P1Z9 1646 aa6.63□□□□□ -1.35
HERC4-201ENST00000277817 SLC24A1O60721 1099 aa6.6□□□□□ -1.35
HERC4-201ENST00000277817 PLPPR3Q6T4P5 718 aa6.42□□□□□ -1.38
HERC4-201ENST00000277817 CSRNP3Q8WYN3 585 aa6.41□□□□□ -1.38
HERC4-201ENST00000277817 EHMT2Q96KQ7 1210 aa6.37□□□□□ -1.39
HERC4-201ENST00000277817 MYO15BQ96JP2 1530 aa6.35□□□□□ -1.39
HERC4-201ENST00000277817 KCNA4P22459 653 aa6.35□□□□□ -1.39
HERC4-201ENST00000277817 SHROOM4Q9ULL8 1493 aa6.32□□□□□ -1.4
HERC4-201ENST00000277817 RTN4Q9NQC3 1192 aaKnown RBP6.2□□□□□ -1.42
HERC4-201ENST00000277817 UNC13AQ9UPW8 1703 aa6.16□□□□□ -1.42
HERC4-201ENST00000277817 AMER1Q5JTC6 1135 aaPredicted RBP6.13□□□□□ -1.43
HERC4-201ENST00000277817 DCAF1Q9Y4B6 1507 aa6.1□□□□□ -1.43
HERC4-201ENST00000277817 ADRA2BP18089 450 aa6.09□□□□□ -1.43
HERC4-201ENST00000277817 ZBTB22O15209 634 aa6.05□□□□□ -1.44
HERC4-201ENST00000277817 NCBP3Q53F19 620 aaKnown RBP6.02□□□□□ -1.45
HERC4-201ENST00000277817 SLC4A1APQ9BWU0 796 aaKnown RBP6□□□□□ -1.45
HERC4-201ENST00000277817 NACADO15069 1562 aa5.98□□□□□ -1.45
HERC4-201ENST00000277817 DNAJC5BQ9UF47 199 aa5.97□□□□□ -1.45
HERC4-201ENST00000277817 SENP3Q9H4L4 574 aaPredicted RBP5.96□□□□□ -1.46
HERC4-201ENST00000277817 BICRAQ9NZM4 1560 aa5.94□□□□□ -1.46
HERC4-201ENST00000277817 PPP6R1Q9UPN7 881 aa5.91□□□□□ -1.46
HERC4-201ENST00000277817 RB1CC1Q8TDY2 1594 aa5.9□□□□□ -1.47
HERC4-201ENST00000277817 NPM3O75607 178 aaKnown RBP5.78□□□□□ -1.48
HERC4-201ENST00000277817 DAXXQ9UER7 740 aaPredicted RBP5.76□□□□□ -1.49
HERC4-201ENST00000277817 PPP4R3CPQ6ZMV5 832 aa5.75□□□□□ -1.49
HERC4-201ENST00000277817 PEG3Q9GZU2 1588 aa5.7□□□□□ -1.5
HERC4-201ENST00000277817 FOXD1Q16676 465 aa5.68□□□□□ -1.5
HERC4-201ENST00000277817 PRKCSHP14314 528 aaPredicted RBP5.68□□□□□ -1.5
HERC4-201ENST00000277817 PLCB2Q00722 1185 aa5.67□□□□□ -1.5
HERC4-201ENST00000277817 TAOK2Q9UL54 1235 aa5.66□□□□□ -1.5
HERC4-201ENST00000277817 ZCCHC6Q5VYS8 1495 aaKnown RBP5.65□□□□□ -1.5
HERC4-201ENST00000277817 PRDM2Q13029 1718 aa5.62□□□□□ -1.51
HERC4-201ENST00000277817 FOXD4L1Q9NU39 408 aa5.61□□□□□ -1.51
HERC4-201ENST00000277817 ARXQ96QS3 562 aa5.61□□□□□ -1.51
HERC4-201ENST00000277817 TIMELESSQ9UNS1 1208 aa5.59□□□□□ -1.52
HERC4-201ENST00000277817 ABCC9O60706 1549 aa5.57□□□□□ -1.52
HERC4-201ENST00000277817 SMARCA2P51531 1590 aa5.57□□□□□ -1.52
HERC4-201ENST00000277817 BAZ1BQ9UIG0 1483 aaKnown RBP5.57□□□□□ -1.52
HERC4-201ENST00000277817 WDR97A6NE52 1622 aa5.56□□□□□ -1.52
HERC4-201ENST00000277817 EIF4G1Q04637 1599 aaKnown RBP5.56□□□□□ -1.52
HERC4-201ENST00000277817 CC2D2AQ9P2K1 1620 aa5.56□□□□□ -1.52
HERC4-201ENST00000277817 BCANQ96GW7 911 aa5.55□□□□□ -1.52
HERC4-201ENST00000277817 HMGXB3Q12766 1538 aa5.55□□□□□ -1.52
HERC4-201ENST00000277817 THOC2Q8NI27 1593 aaKnown RBP5.54□□□□□ -1.52
HERC4-201ENST00000277817 CUX2O14529 1486 aa5.52□□□□□ -1.53
HERC4-201ENST00000277817 VSIG10Q8N0Z9 540 aa5.52□□□□□ -1.53
HERC4-201ENST00000277817 DNAJC5Q9H3Z4 198 aa5.51□□□□□ -1.53
HERC4-201ENST00000277817 ATXN8OSP0DMR3 200 aa5.5□□□□□ -1.53
HERC4-201ENST00000277817 KDM2AQ9Y2K7 1162 aa5.5□□□□□ -1.53
HERC4-201ENST00000277817 CNKSR2Q8WXI2 1034 aa5.48□□□□□ -1.53
HERC4-201ENST00000277817 FKBP8Q14318 412 aa5.47□□□□□ -1.53
HERC4-201ENST00000277817 POTEDQ86YR6 584 aa5.44□□□□□ -1.54
HERC4-201ENST00000277817 PROM2Q8N271 834 aa5.43□□□□□ -1.54
HERC4-201ENST00000277817 SLC4A2P04920 1241 aa5.43□□□□□ -1.54
HERC4-201ENST00000277817 TPRNQ4KMQ1 711 aa5.4□□□□□ -1.54
HERC4-201ENST00000277817 NCAPD3P42695 1498 aa5.39□□□□□ -1.55
HERC4-201ENST00000277817 LAMC3Q9Y6N6 1575 aa5.38□□□□□ -1.55
HERC4-201ENST00000277817 WDR62O43379 1518 aa5.36□□□□□ -1.55
HERC4-201ENST00000277817 TULP1O00294 542 aaPredicted RBP5.35□□□□□ -1.55
HERC4-201ENST00000277817 PKD2Q13563 968 aa5.35□□□□□ -1.55
HERC4-201ENST00000277817 GTF3C3Q9Y5Q9 886 aa5.34□□□□□ -1.55
HERC4-201ENST00000277817 SMARCA4P51532 1647 aa5.34□□□□□ -1.55
HERC4-201ENST00000277817 FBLN2P98095 1184 aa5.34□□□□□ -1.56
HERC4-201ENST00000277817 TMEM132AQ24JP5 1023 aa5.32□□□□□ -1.56
HERC4-201ENST00000277817 SCRIBQ14160 1630 aa5.32□□□□□ -1.56
HERC4-201ENST00000277817 RNF216Q9NWF9 866 aaPredicted RBP5.3□□□□□ -1.56
HERC4-201ENST00000277817 KIF21AQ7Z4S6 1674 aa5.3□□□□□ -1.56
HERC4-201ENST00000277817 HAP1P54257 671 aaPredicted RBP5.3□□□□□ -1.56
HERC4-201ENST00000277817 PIAS4Q8N2W9 510 aaPredicted RBP5.29□□□□□ -1.56
HERC4-201ENST00000277817 NPM1P06748 294 aaKnown RBP eCLIP5.29□□□□□ -1.56
HERC4-201ENST00000277817 HOMEZQ8IX15 550 aa5.29□□□□□ -1.56
HERC4-201ENST00000277817 ERICH6Q7L0X2 663 aa5.28□□□□□ -1.56
HERC4-201ENST00000277817 CECR2Q9BXF3 1484 aa5.26□□□□□ -1.57
HERC4-201ENST00000277817 BBXQ8WY36 941 aaPredicted RBP5.24□□□□□ -1.57
HERC4-201ENST00000277817 MAPK8IP2Q13387 824 aaPredicted RBP5.24□□□□□ -1.57
HERC4-201ENST00000277817 IFNLR1Q8IU57 520 aaPredicted RBP5.23□□□□□ -1.57
HERC4-201ENST00000277817 HOXD11P31277 338 aaPredicted RBP5.22□□□□□ -1.57
HERC4-201ENST00000277817 MYCNP04198 464 aaPredicted RBP5.22□□□□□ -1.57
HERC4-201ENST00000277817 ATF5Q9Y2D1 282 aaPredicted RBP5.22□□□□□ -1.57
HERC4-201ENST00000277817 BAZ1AQ9NRL2 1556 aaPredicted RBP5.2□□□□□ -1.58
HERC4-201ENST00000277817 ATAD2BQ9ULI0 1458 aa5.19□□□□□ -1.58
HERC4-201ENST00000277817 APLP2Q06481 763 aa5.17□□□□□ -1.58
HERC4-201ENST00000277817 SHROOM2Q13796 1616 aa5.17□□□□□ -1.58
HERC4-201ENST00000277817 TARBP1Q13395 1621 aaKnown RBP5.16□□□□□ -1.58
HERC4-201ENST00000277817 CLASP1Q7Z460 1538 aa5.15□□□□□ -1.59
HERC4-201ENST00000277817 HRCP23327 699 aa5.13□□□□□ -1.59
HERC4-201ENST00000277817 VASPP50552 380 aaPredicted RBP5.13□□□□□ -1.59
HERC4-201ENST00000277817 TSHZ2Q9NRE2 1034 aa5.13□□□□□ -1.59
HERC4-201ENST00000277817 FBXO3Q9UK99 471 aa5.1□□□□□ -1.59
HERC4-201ENST00000277817 KLHL34Q8N239 644 aa5.09□□□□□ -1.59
HERC4-201ENST00000277817 NESP48681 1621 aa5.09□□□□□ -1.59
HERC4-201ENST00000277817 SCAF1Q9H7N4 1312 aaKnown RBP5.09□□□□□ -1.6
HERC4-201ENST00000277817 TOP2AP11388 1531 aaKnown RBP5.07□□□□□ -1.6
HERC4-201ENST00000277817 CFTRP13569 1480 aa5.07□□□□□ -1.6
HERC4-201ENST00000277817 RIMBP3CA6NJZ7 1639 aa5.07□□□□□ -1.6
HERC4-201ENST00000277817 RIMBP3BA6NNM3 1639 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms