RNA–Protein interactions for RNA: ENST00000274901.8

HMGCLL1-201, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,475 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-201ENST00000274901 NISCHQ9Y2I1 1504 aa17.99■□□□□ 0.47
HMGCLL1-201ENST00000274901 HRCP23327 699 aa15.72■□□□□ 0.11
HMGCLL1-201ENST00000274901 PPARGC1BQ86YN6 1023 aaKnown RBP15.5■□□□□ 0.07
HMGCLL1-201ENST00000274901 CCDC180Q9P1Z9 1646 aa15.48■□□□□ 0.07
HMGCLL1-201ENST00000274901 MYO15BQ96JP2 1530 aa15.34■□□□□ 0.05
HMGCLL1-201ENST00000274901 PCGF6Q9BYE7 350 aa15.34■□□□□ 0.05
HMGCLL1-201ENST00000274901 SHROOM4Q9ULL8 1493 aa15.31■□□□□ 0.04
HMGCLL1-201ENST00000274901 SUPT5HO00267 1087 aaKnown RBP15.25■□□□□ 0.03
HMGCLL1-201ENST00000274901 PELP1Q8IZL8 1130 aaKnown RBP15.19■□□□□ 0.02
HMGCLL1-201ENST00000274901 DCAF8L2P0C7V8 631 aa15.13■□□□□ 0.01
HMGCLL1-201ENST00000274901 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
HMGCLL1-201ENST00000274901 CHIC1Q5VXU3 224 aa15.08■□□□□ 0
HMGCLL1-201ENST00000274901 SCAF1Q9H7N4 1312 aaKnown RBP15.01□□□□□ -0.01
HMGCLL1-201ENST00000274901 DCAF1Q9Y4B6 1507 aa14.89□□□□□ -0.03
HMGCLL1-201ENST00000274901 LOC105371045A0A1W2PR82 267 aa14.79□□□□□ -0.04
HMGCLL1-201ENST00000274901 ABCC9O60706 1549 aa14.77□□□□□ -0.04
HMGCLL1-201ENST00000274901 TRIM26Q12899 539 aaPredicted RBP14.74□□□□□ -0.05
HMGCLL1-201ENST00000274901 ZEB1P37275 1124 aaPredicted RBP14.58□□□□□ -0.08
HMGCLL1-201ENST00000274901 MYT1Q01538 1121 aa14.56□□□□□ -0.08
HMGCLL1-201ENST00000274901 NEUROD1Q13562 356 aa14.53□□□□□ -0.08
HMGCLL1-201ENST00000274901 ACIN1Q9UKV3 1341 aaKnown RBP14.52□□□□□ -0.09
HMGCLL1-201ENST00000274901 SCRIBQ14160 1630 aa14.47□□□□□ -0.09
HMGCLL1-201ENST00000274901 NACADO15069 1562 aa14.43□□□□□ -0.1
HMGCLL1-201ENST00000274901 GTF3C3Q9Y5Q9 886 aa14.42□□□□□ -0.1
HMGCLL1-201ENST00000274901 RB1CC1Q8TDY2 1594 aa14.3□□□□□ -0.12
HMGCLL1-201ENST00000274901 CENPBP07199 599 aaPredicted RBP14.2□□□□□ -0.14
HMGCLL1-201ENST00000274901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.19□□□□□ -0.14
HMGCLL1-201ENST00000274901 DIEXFQ68CQ4 756 aaKnown RBP14.18□□□□□ -0.14
HMGCLL1-201ENST00000274901 FAM9AQ8IZU1 332 aaPredicted RBP14.13□□□□□ -0.15
HMGCLL1-201ENST00000274901 EHMT2Q96KQ7 1210 aa14.12□□□□□ -0.15
HMGCLL1-201ENST00000274901 CECR2Q9BXF3 1484 aa14.08□□□□□ -0.15
HMGCLL1-201ENST00000274901 CCER1Q8TC90 406 aaPredicted RBP14.08□□□□□ -0.16
HMGCLL1-201ENST00000274901 RSF1Q96T23 1441 aaPredicted RBP14.08□□□□□ -0.16
HMGCLL1-201ENST00000274901 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
HMGCLL1-201ENST00000274901 UNC13AQ9UPW8 1703 aa14.05□□□□□ -0.16
HMGCLL1-201ENST00000274901 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
HMGCLL1-201ENST00000274901 YTHDC1Q96MU7 727 aaKnown RBP14.01□□□□□ -0.17
HMGCLL1-201ENST00000274901 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
HMGCLL1-201ENST00000274901 BICRAQ9NZM4 1560 aa13.91□□□□□ -0.18
HMGCLL1-201ENST00000274901 WIZO95785 1651 aa13.88□□□□□ -0.19
HMGCLL1-201ENST00000274901 MIER1Q8N108 512 aa13.87□□□□□ -0.19
HMGCLL1-201ENST00000274901 ZNF316A6NFI3 1004 aaPredicted RBP13.86□□□□□ -0.19
HMGCLL1-201ENST00000274901 BCL11AQ9H165 835 aa13.85□□□□□ -0.19
HMGCLL1-201ENST00000274901 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
HMGCLL1-201ENST00000274901 TTBK1Q5TCY1 1321 aaPredicted RBP13.81□□□□□ -0.2
HMGCLL1-201ENST00000274901 SMARCA4P51532 1647 aa13.79□□□□□ -0.2
HMGCLL1-201ENST00000274901 ANP32EQ9BTT0 268 aa13.73□□□□□ -0.21
HMGCLL1-201ENST00000274901 SUPT16HQ9Y5B9 1047 aaKnown RBP13.71□□□□□ -0.21
HMGCLL1-201ENST00000274901 TSHZ2Q9NRE2 1034 aa13.7□□□□□ -0.22
HMGCLL1-201ENST00000274901 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
HMGCLL1-201ENST00000274901 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
HMGCLL1-201ENST00000274901 WRNQ14191 1432 aaPredicted RBP eCLIP13.62□□□□□ -0.23
HMGCLL1-201ENST00000274901 CCDC88BA6NC98 1476 aa13.6□□□□□ -0.23
HMGCLL1-201ENST00000274901 SMARCA2P51531 1590 aa13.56□□□□□ -0.24
HMGCLL1-201ENST00000274901 ATAD2BQ9ULI0 1458 aa13.55□□□□□ -0.24
HMGCLL1-201ENST00000274901 CEP162Q5TB80 1403 aa13.54□□□□□ -0.24
HMGCLL1-201ENST00000274901 PEG3Q9GZU2 1588 aa13.52□□□□□ -0.25
HMGCLL1-201ENST00000274901 CLSPNQ9HAW4 1339 aa13.5□□□□□ -0.25
HMGCLL1-201ENST00000274901 BAZ1BQ9UIG0 1483 aaKnown RBP13.5□□□□□ -0.25
HMGCLL1-201ENST00000274901 EIF4G1Q04637 1599 aaKnown RBP13.49□□□□□ -0.25
HMGCLL1-201ENST00000274901 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
HMGCLL1-201ENST00000274901 ABCC8Q09428 1581 aa13.42□□□□□ -0.26
HMGCLL1-201ENST00000274901 BCANQ96GW7 911 aa13.41□□□□□ -0.26
HMGCLL1-201ENST00000274901 TNIKQ9UKE5 1360 aa13.39□□□□□ -0.27
HMGCLL1-201ENST00000274901 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
HMGCLL1-201ENST00000274901 PRKCSHP14314 528 aaPredicted RBP13.37□□□□□ -0.27
HMGCLL1-201ENST00000274901 KCNH8Q96L42 1107 aa13.37□□□□□ -0.27
HMGCLL1-201ENST00000274901 SOGA1O94964 1423 aa13.37□□□□□ -0.27
HMGCLL1-201ENST00000274901 NCAPD3P42695 1498 aa13.36□□□□□ -0.27
HMGCLL1-201ENST00000274901 RBM19Q9Y4C8 960 aaKnown RBP13.33□□□□□ -0.28
HMGCLL1-201ENST00000274901 RUSC2Q8N2Y8 1516 aa13.32□□□□□ -0.28
HMGCLL1-201ENST00000274901 MSH5O43196 834 aa13.31□□□□□ -0.28
HMGCLL1-201ENST00000274901 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
HMGCLL1-201ENST00000274901 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
HMGCLL1-201ENST00000274901 FKBP8Q14318 412 aa13.29□□□□□ -0.28
HMGCLL1-201ENST00000274901 CC2D2AQ9P2K1 1620 aa13.27□□□□□ -0.28
HMGCLL1-201ENST00000274901 DHX57Q6P158 1386 aaKnown RBP13.24□□□□□ -0.29
HMGCLL1-201ENST00000274901 ITGAEP38570 1179 aa13.22□□□□□ -0.29
HMGCLL1-201ENST00000274901 GOLGA3Q08378 1498 aa13.19□□□□□ -0.3
HMGCLL1-201ENST00000274901 SYNJ1O43426 1573 aa13.19□□□□□ -0.3
HMGCLL1-201ENST00000274901 CLIP1P30622 1438 aa13.15□□□□□ -0.3
HMGCLL1-201ENST00000274901 EEA1Q15075 1411 aa13.13□□□□□ -0.31
HMGCLL1-201ENST00000274901 CFTRP13569 1480 aa13.13□□□□□ -0.31
HMGCLL1-201ENST00000274901 VPS8Q8N3P4 1428 aa13.12□□□□□ -0.31
HMGCLL1-201ENST00000274901 DNAJC5BQ9UF47 199 aa13.12□□□□□ -0.31
HMGCLL1-201ENST00000274901 CADPSQ9ULU8 1353 aa13.08□□□□□ -0.31
HMGCLL1-201ENST00000274901 TRIM52Q96A61 297 aa13.05□□□□□ -0.32
HMGCLL1-201ENST00000274901 FANCIQ9NVI1 1328 aa13.05□□□□□ -0.32
HMGCLL1-201ENST00000274901 NEFLP07196 543 aa13.05□□□□□ -0.32
HMGCLL1-201ENST00000274901 TOP2BQ02880 1626 aa13.04□□□□□ -0.32
HMGCLL1-201ENST00000274901 RANGAP1P46060 587 aaPredicted RBP13.04□□□□□ -0.32
HMGCLL1-201ENST00000274901 CUX1P39880 1505 aa13.04□□□□□ -0.32
HMGCLL1-201ENST00000274901 CEP164Q9UPV0 1460 aa13.03□□□□□ -0.32
HMGCLL1-201ENST00000274901 DDX10Q13206 875 aaKnown RBP13.03□□□□□ -0.32
HMGCLL1-201ENST00000274901 KIF21BO75037 1637 aa13.02□□□□□ -0.32
HMGCLL1-201ENST00000274901 NESP48681 1621 aa13.02□□□□□ -0.32
HMGCLL1-201ENST00000274901 DEKP35659 375 aaKnown RBP13.02□□□□□ -0.33
HMGCLL1-201ENST00000274901 APLP2Q06481 763 aa13.02□□□□□ -0.33
HMGCLL1-201ENST00000274901 ANO8Q9HCE9 1232 aaPredicted RBP13.02□□□□□ -0.33
HMGCLL1-201ENST00000274901 BIVM-ERCC5R4GMW8 1640 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms