RNA–Protein interactions for RNA: ENSMUST00000201549.3

Scn8a-213, Transcript of Sodium channel protein type 8 subunit alpha, mousemouse

APPRIS P5 TSL 5 BASIC

Gene Scn8a, Length 7,120 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn8a-213ENSMUST00000201549 Rhox8Q6VSS7 320 aa16.23■□□□□ 0.19
Scn8a-213ENSMUST00000201549 Ehmt2Q9Z148 1263 aaKnown RBP15.1■□□□□ 0.01
Scn8a-213ENSMUST00000201549 Rpgrip1Q9EPQ2 1331 aa14.97□□□□□ -0.01
Scn8a-213ENSMUST00000201549 Amer1Q7TS75 1132 aa14.87□□□□□ -0.03
Scn8a-213ENSMUST00000201549 NischQ80TM9 1593 aa14.81□□□□□ -0.04
Scn8a-213ENSMUST00000201549 Ccdc136Q3TVA9 1136 aa14.66□□□□□ -0.06
Scn8a-213ENSMUST00000201549 Ube2uB1AUC4 352 aa14.53□□□□□ -0.08
Scn8a-213ENSMUST00000201549 Wdr66E9Q743 1299 aa14.49□□□□□ -0.09
Scn8a-213ENSMUST00000201549 Las1lA2BE28 776 aaKnown RBP14.44□□□□□ -0.1
Scn8a-213ENSMUST00000201549 Cngb1E1AZ71 1325 aa14.37□□□□□ -0.11
Scn8a-213ENSMUST00000201549 Zeb1Q64318 1117 aa14.35□□□□□ -0.11
Scn8a-213ENSMUST00000201549 Gab3Q8BSM5 595 aa14.29□□□□□ -0.12
Scn8a-213ENSMUST00000201549 Acin1Q9JIX8 1338 aaKnown RBP14.22□□□□□ -0.13
Scn8a-213ENSMUST00000201549 Trim41Q5NCC3 630 aa14.22□□□□□ -0.13
Scn8a-213ENSMUST00000201549 Ccdc180J3QNE4 1664 aa14.22□□□□□ -0.13
Scn8a-213ENSMUST00000201549 Pelp1Q9DBD5 1123 aaKnown RBP14.2□□□□□ -0.14
Scn8a-213ENSMUST00000201549 Ttbk1Q6PCN3 1308 aa14.2□□□□□ -0.14
Scn8a-213ENSMUST00000201549 Rtl1Q7M732 1744 aa14.18□□□□□ -0.14
Scn8a-213ENSMUST00000201549 Esf1Q3V1V3 845 aaKnown RBP14.18□□□□□ -0.14
Scn8a-213ENSMUST00000201549 Slc24a1Q91WD8 1130 aa14.05□□□□□ -0.16
Scn8a-213ENSMUST00000201549 4930567H17RikQ3V0K5 233 aa13.95□□□□□ -0.18
Scn8a-213ENSMUST00000201549 Myt1lP97500 1187 aa13.93□□□□□ -0.18
Scn8a-213ENSMUST00000201549 Abcc9P70170 1546 aa13.88□□□□□ -0.19
Scn8a-213ENSMUST00000201549 Npm2Q80W85 207 aa13.88□□□□□ -0.19
Scn8a-213ENSMUST00000201549 Pcgf6Q99NA9 353 aa13.88□□□□□ -0.19
Scn8a-213ENSMUST00000201549 UbtfP25976 765 aaKnown RBP13.83□□□□□ -0.2
Scn8a-213ENSMUST00000201549 Myt1Q8CFC2 1127 aa13.81□□□□□ -0.2
Scn8a-213ENSMUST00000201549 HrcG5E8J6 738 aa13.78□□□□□ -0.2
Scn8a-213ENSMUST00000201549 CenpbP27790 599 aa13.74□□□□□ -0.21
Scn8a-213ENSMUST00000201549 NefmP08553 848 aa13.74□□□□□ -0.21
Scn8a-213ENSMUST00000201549 DiexfQ8BTT6 772 aaKnown RBP13.71□□□□□ -0.21
Scn8a-213ENSMUST00000201549 Supt5hO55201 1082 aaKnown RBP13.66□□□□□ -0.22
Scn8a-213ENSMUST00000201549 Ppargc1bQ8VHJ7 1014 aa13.59□□□□□ -0.23
Scn8a-213ENSMUST00000201549 4933416C03RikQ3V063 378 aa13.58□□□□□ -0.24
Scn8a-213ENSMUST00000201549 Zcchc6Q5BLK4 1491 aaKnown RBP13.55□□□□□ -0.24
Scn8a-213ENSMUST00000201549 Abcc8B2RUS7 1588 aa13.52□□□□□ -0.25
Scn8a-213ENSMUST00000201549 Cdk11bP24788 784 aaKnown RBP13.49□□□□□ -0.25
Scn8a-213ENSMUST00000201549 Gm35339A0A140LHH9 1649 aa13.47□□□□□ -0.25
Scn8a-213ENSMUST00000201549 Eif5bQ05D44 1216 aaKnown RBP13.41□□□□□ -0.26
Scn8a-213ENSMUST00000201549 Mier1Q5UAK0 511 aa13.41□□□□□ -0.26
Scn8a-213ENSMUST00000201549 Neurod1Q60867 357 aa13.4□□□□□ -0.26
Scn8a-213ENSMUST00000201549 Nop58Q6DFW4 536 aaKnown RBP13.39□□□□□ -0.27
Scn8a-213ENSMUST00000201549 Chic1Q8CBW7 227 aa13.38□□□□□ -0.27
Scn8a-213ENSMUST00000201549 Ap3b1Q9Z1T1 1105 aa13.38□□□□□ -0.27
Scn8a-213ENSMUST00000201549 Il27Q8K3I6 234 aa13.37□□□□□ -0.27
Scn8a-213ENSMUST00000201549 Stra8P70278 393 aa13.29□□□□□ -0.28
Scn8a-213ENSMUST00000201549 Os9Q8K2C7 672 aa13.28□□□□□ -0.28
Scn8a-213ENSMUST00000201549 Fam50aQ9WV03 339 aaKnown RBP13.25□□□□□ -0.29
Scn8a-213ENSMUST00000201549 TonslQ6NZL6 1363 aa13.24□□□□□ -0.29
Scn8a-213ENSMUST00000201549 NclP09405 707 aaKnown RBP13.21□□□□□ -0.29
Scn8a-213ENSMUST00000201549 Zbtb7cQ8VCZ7 619 aa13.19□□□□□ -0.3
Scn8a-213ENSMUST00000201549 Dcaf1Q80TR8 1506 aa13.19□□□□□ -0.3
Scn8a-213ENSMUST00000201549 Plppr3Q7TPB0 716 aa13.16□□□□□ -0.3
Scn8a-213ENSMUST00000201549 Plekhg3Q4VAC9 1341 aa13.12□□□□□ -0.31
Scn8a-213ENSMUST00000201549 ArxO35085 564 aa13.11□□□□□ -0.31
Scn8a-213ENSMUST00000201549 Sall2Q9QX96 1004 aa13.1□□□□□ -0.31
Scn8a-213ENSMUST00000201549 Tnnt3Q9QZ47 272 aa13.1□□□□□ -0.31
Scn8a-213ENSMUST00000201549 Rb1cc1Q9ESK9 1588 aa13.1□□□□□ -0.31
Scn8a-213ENSMUST00000201549 Gm38655A0A286YDK6 273 aa13.09□□□□□ -0.31
Scn8a-213ENSMUST00000201549 Prdm10Q3UTQ7 1184 aa13.09□□□□□ -0.31
Scn8a-213ENSMUST00000201549 Zbtb4Q5F293 982 aa13.07□□□□□ -0.32
Scn8a-213ENSMUST00000201549 Ythdc1E9Q5K9 736 aaKnown RBP13.06□□□□□ -0.32
Scn8a-213ENSMUST00000201549 ClspnQ80YR7 1315 aa13.06□□□□□ -0.32
Scn8a-213ENSMUST00000201549 Csrnp3P59055 597 aa13.05□□□□□ -0.32
Scn8a-213ENSMUST00000201549 Gm13697A2AK42 830 aa13.04□□□□□ -0.32
Scn8a-213ENSMUST00000201549 Mapk8ip2Q9ERE9 830 aa13.03□□□□□ -0.32
Scn8a-213ENSMUST00000201549 NrdcQ8BHG1 1161 aa13.02□□□□□ -0.33
Scn8a-213ENSMUST00000201549 Cep164Q5DU05 1446 aa13.02□□□□□ -0.33
Scn8a-213ENSMUST00000201549 Rtl5Q5DTT4 599 aa13.01□□□□□ -0.33
Scn8a-213ENSMUST00000201549 Ifnlr1Q8CGK5 535 aa13.01□□□□□ -0.33
Scn8a-213ENSMUST00000201549 Rangap1P46061 589 aaKnown RBP12.98□□□□□ -0.33
Scn8a-213ENSMUST00000201549 Lmod2Q3UHZ5 550 aa12.96□□□□□ -0.33
Scn8a-213ENSMUST00000201549 NeflP08551 543 aa12.96□□□□□ -0.34
Scn8a-213ENSMUST00000201549 Eid3Q3V124 375 aa12.96□□□□□ -0.34
Scn8a-213ENSMUST00000201549 Anks4bQ8K3X6 423 aa12.92□□□□□ -0.34
Scn8a-213ENSMUST00000201549 Lmod3E9QA62 571 aa12.9□□□□□ -0.34
Scn8a-213ENSMUST00000201549 Polr3glQ8R0C0 218 aa12.87□□□□□ -0.35
Scn8a-213ENSMUST00000201549 Brd4Q9ESU6 1400 aaKnown RBP12.86□□□□□ -0.35
Scn8a-213ENSMUST00000201549 CatipB9EKE5 520 aa12.86□□□□□ -0.35
Scn8a-213ENSMUST00000201549 Atp1b4Q99ME6 356 aa12.82□□□□□ -0.36
Scn8a-213ENSMUST00000201549 Clip1Q922J3 1391 aa12.82□□□□□ -0.36
Scn8a-213ENSMUST00000201549 DaxxO35613 739 aa12.79□□□□□ -0.36
Scn8a-213ENSMUST00000201549 Anp32bQ9EST5 272 aaKnown RBP12.79□□□□□ -0.36
Scn8a-213ENSMUST00000201549 Anp32aO35381 247 aa12.77□□□□□ -0.37
Scn8a-213ENSMUST00000201549 Aebp2Q9Z248 504 aaKnown RBP12.76□□□□□ -0.37
Scn8a-213ENSMUST00000201549 Hnrnpul2Q00PI9 745 aaKnown RBP12.73□□□□□ -0.37
Scn8a-213ENSMUST00000201549 Aplp2Q06335 707 aa12.72□□□□□ -0.37
Scn8a-213ENSMUST00000201549 Baz1aO88379 1555 aa12.72□□□□□ -0.37
Scn8a-213ENSMUST00000201549 Gm13695A2AK44 830 aa12.72□□□□□ -0.37
Scn8a-213ENSMUST00000201549 Npm1Q61937 292 aaKnown RBP12.7□□□□□ -0.38
Scn8a-213ENSMUST00000201549 Podxl2Q8CAE9 603 aa12.7□□□□□ -0.38
Scn8a-213ENSMUST00000201549 Erich6D3Z6S9 713 aa12.69□□□□□ -0.38
Scn8a-213ENSMUST00000201549 Vsig10D3YX43 558 aa12.69□□□□□ -0.38
Scn8a-213ENSMUST00000201549 1700123L14RikQ3V2K7 440 aa12.68□□□□□ -0.38
Scn8a-213ENSMUST00000201549 NacadQ5SWP3 1504 aa12.6□□□□□ -0.39
Scn8a-213ENSMUST00000201549 Rsf1E9PWW9 1441 aaKnown RBP12.6□□□□□ -0.39
Scn8a-213ENSMUST00000201549 Calr4Q3TQS0 420 aa12.59□□□□□ -0.39
Scn8a-213ENSMUST00000201549 Ppp4r2Q0VGB7 417 aa12.58□□□□□ -0.4
Scn8a-213ENSMUST00000201549 Golga3P55937 1487 aa12.55□□□□□ -0.4
Scn8a-213ENSMUST00000201549 Chic2Q9D9G3 165 aa12.55□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 109.5 ms