RNA–Protein interactions for RNA: ENSMUST00000100063.8

Scn9a-201, Transcript of Sodium channel protein type 9 subunit alpha, mousemouse

APPRIS ALT2 TSL 5 BASIC

Gene Scn9a, Length 9,813 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn9a-201ENSMUST00000100063 Rhox8Q6VSS7 320 aa18.41■□□□□ 0.54
Scn9a-201ENSMUST00000100063 Ube2uB1AUC4 352 aa16.54■□□□□ 0.24
Scn9a-201ENSMUST00000100063 Esf1Q3V1V3 845 aaKnown RBP16.52■□□□□ 0.24
Scn9a-201ENSMUST00000100063 Zeb1Q64318 1117 aa16.43■□□□□ 0.22
Scn9a-201ENSMUST00000100063 Cngb1E1AZ71 1325 aa16.34■□□□□ 0.21
Scn9a-201ENSMUST00000100063 Pelp1Q9DBD5 1123 aaKnown RBP16.25■□□□□ 0.19
Scn9a-201ENSMUST00000100063 Rpgrip1Q9EPQ2 1331 aa16.19■□□□□ 0.18
Scn9a-201ENSMUST00000100063 Las1lA2BE28 776 aaKnown RBP16.18■□□□□ 0.18
Scn9a-201ENSMUST00000100063 Npm2Q80W85 207 aa16.16■□□□□ 0.18
Scn9a-201ENSMUST00000100063 Ccdc136Q3TVA9 1136 aa16.09■□□□□ 0.17
Scn9a-201ENSMUST00000100063 Wdr66E9Q743 1299 aa16.07■□□□□ 0.16
Scn9a-201ENSMUST00000100063 Ehmt2Q9Z148 1263 aaKnown RBP16.06■□□□□ 0.16
Scn9a-201ENSMUST00000100063 Myt1lP97500 1187 aa15.87■□□□□ 0.13
Scn9a-201ENSMUST00000100063 Trim41Q5NCC3 630 aa15.86■□□□□ 0.13
Scn9a-201ENSMUST00000100063 Gab3Q8BSM5 595 aa15.86■□□□□ 0.13
Scn9a-201ENSMUST00000100063 Stra8P70278 393 aa15.4■□□□□ 0.06
Scn9a-201ENSMUST00000100063 Amer1Q7TS75 1132 aa15.38■□□□□ 0.05
Scn9a-201ENSMUST00000100063 Il27Q8K3I6 234 aa15.37■□□□□ 0.05
Scn9a-201ENSMUST00000100063 Os9Q8K2C7 672 aa15.32■□□□□ 0.04
Scn9a-201ENSMUST00000100063 Slc24a1Q91WD8 1130 aa15.31■□□□□ 0.04
Scn9a-201ENSMUST00000100063 NischQ80TM9 1593 aa15.29■□□□□ 0.04
Scn9a-201ENSMUST00000100063 UbtfP25976 765 aaKnown RBP15.26■□□□□ 0.03
Scn9a-201ENSMUST00000100063 Anp32bQ9EST5 272 aaKnown RBP15.25■□□□□ 0.03
Scn9a-201ENSMUST00000100063 4930567H17RikQ3V0K5 233 aa15.16■□□□□ 0.02
Scn9a-201ENSMUST00000100063 Gm13697A2AK42 830 aa15.12■□□□□ 0.01
Scn9a-201ENSMUST00000100063 NefmP08553 848 aa15.06■□□□□ 0
Scn9a-201ENSMUST00000100063 NeflP08551 543 aa15.04■□□□□ -0
Scn9a-201ENSMUST00000100063 NrdcQ8BHG1 1161 aa15.04■□□□□ -0
Scn9a-201ENSMUST00000100063 Fam50aQ9WV03 339 aaKnown RBP15.03■□□□□ -0
Scn9a-201ENSMUST00000100063 NclP09405 707 aaKnown RBP15.03■□□□□ -0
Scn9a-201ENSMUST00000100063 Neurod1Q60867 357 aa15.03■□□□□ -0
Scn9a-201ENSMUST00000100063 CenpbP27790 599 aa15.01□□□□□ -0.01
Scn9a-201ENSMUST00000100063 HrcG5E8J6 738 aa14.99□□□□□ -0.01
Scn9a-201ENSMUST00000100063 Ap3b1Q9Z1T1 1105 aa14.95□□□□□ -0.02
Scn9a-201ENSMUST00000100063 Rtl1Q7M732 1744 aa14.87□□□□□ -0.03
Scn9a-201ENSMUST00000100063 Ifnlr1Q8CGK5 535 aa14.81□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Gm35339A0A140LHH9 1649 aa14.81□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Ccdc180J3QNE4 1664 aa14.81□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Gm13695A2AK44 830 aa14.8□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Zcchc6Q5BLK4 1491 aaKnown RBP14.8□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Abcc9P70170 1546 aa14.8□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Ttbk1Q6PCN3 1308 aa14.79□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Hnrnpul2Q00PI9 745 aaKnown RBP14.79□□□□□ -0.04
Scn9a-201ENSMUST00000100063 DiexfQ8BTT6 772 aaKnown RBP14.78□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Zbtb7cQ8VCZ7 619 aa14.78□□□□□ -0.04
Scn9a-201ENSMUST00000100063 Atp1b4Q99ME6 356 aa14.76□□□□□ -0.05
Scn9a-201ENSMUST00000100063 4933416C03RikQ3V063 378 aa14.75□□□□□ -0.05
Scn9a-201ENSMUST00000100063 Npm1Q61937 292 aaKnown RBP14.74□□□□□ -0.05
Scn9a-201ENSMUST00000100063 Plppr3Q7TPB0 716 aa14.73□□□□□ -0.05
Scn9a-201ENSMUST00000100063 Chic1Q8CBW7 227 aa14.73□□□□□ -0.05
Scn9a-201ENSMUST00000100063 Eif5bQ05D44 1216 aaKnown RBP14.7□□□□□ -0.06
Scn9a-201ENSMUST00000100063 Erich6D3Z6S9 713 aa14.64□□□□□ -0.07
Scn9a-201ENSMUST00000100063 Acin1Q9JIX8 1338 aaKnown RBP14.6□□□□□ -0.07
Scn9a-201ENSMUST00000100063 Tnnt3Q9QZ47 272 aa14.58□□□□□ -0.08
Scn9a-201ENSMUST00000100063 Cdk11bP24788 784 aaKnown RBP14.57□□□□□ -0.08
Scn9a-201ENSMUST00000100063 Hdac5Q9Z2V6 1113 aa14.57□□□□□ -0.08
Scn9a-201ENSMUST00000100063 Nlrp6Q91WS2 869 aa14.54□□□□□ -0.08
Scn9a-201ENSMUST00000100063 Safb2Q80YR5 991 aaKnown RBP14.5□□□□□ -0.09
Scn9a-201ENSMUST00000100063 Lmod2Q3UHZ5 550 aa14.43□□□□□ -0.1
Scn9a-201ENSMUST00000100063 TonslQ6NZL6 1363 aa14.41□□□□□ -0.1
Scn9a-201ENSMUST00000100063 Zbtb4Q5F293 982 aa14.4□□□□□ -0.1
Scn9a-201ENSMUST00000100063 Prdm10Q3UTQ7 1184 aa14.39□□□□□ -0.11
Scn9a-201ENSMUST00000100063 Fkbp15Q6P9Q6 1216 aaKnown RBP14.37□□□□□ -0.11
Scn9a-201ENSMUST00000100063 Polr3glQ8R0C0 218 aa14.37□□□□□ -0.11
Scn9a-201ENSMUST00000100063 Nop58Q6DFW4 536 aaKnown RBP14.34□□□□□ -0.11
Scn9a-201ENSMUST00000100063 Ppargc1bQ8VHJ7 1014 aa14.22□□□□□ -0.13
Scn9a-201ENSMUST00000100063 Plekhg3Q4VAC9 1341 aa14.17□□□□□ -0.14
Scn9a-201ENSMUST00000100063 Hsp90aa1P07901 733 aaKnown RBP14.16□□□□□ -0.14
Scn9a-201ENSMUST00000100063 Znf326O88291 580 aa14.16□□□□□ -0.14
Scn9a-201ENSMUST00000100063 P3h3Q8CG70 732 aa14.15□□□□□ -0.14
Scn9a-201ENSMUST00000100063 Rtl5Q5DTT4 599 aa14.11□□□□□ -0.15
Scn9a-201ENSMUST00000100063 Ubl4bQ9CQ84 188 aa14.11□□□□□ -0.15
Scn9a-201ENSMUST00000100063 Rangap1P46061 589 aaKnown RBP14.04□□□□□ -0.16
Scn9a-201ENSMUST00000100063 ArxO35085 564 aa14.02□□□□□ -0.16
Scn9a-201ENSMUST00000100063 CatipB9EKE5 520 aa14.02□□□□□ -0.17
Scn9a-201ENSMUST00000100063 DaxxO35613 739 aa14.02□□□□□ -0.17
Scn9a-201ENSMUST00000100063 Clstn2Q9ER65 966 aa14.02□□□□□ -0.17
Scn9a-201ENSMUST00000100063 Myt1Q8CFC2 1127 aa14.01□□□□□ -0.17
Scn9a-201ENSMUST00000100063 Fgd1P52734 960 aa13.98□□□□□ -0.17
Scn9a-201ENSMUST00000100063 Mier1Q5UAK0 511 aa13.97□□□□□ -0.17
Scn9a-201ENSMUST00000100063 MyclP10166 368 aa13.97□□□□□ -0.17
Scn9a-201ENSMUST00000100063 Brd4Q9ESU6 1400 aaKnown RBP13.97□□□□□ -0.17
Scn9a-201ENSMUST00000100063 Upf2A2AT37 1269 aaKnown RBP13.93□□□□□ -0.18
Scn9a-201ENSMUST00000100063 Clip1Q922J3 1391 aa13.9□□□□□ -0.18
Scn9a-201ENSMUST00000100063 Ccer2J3QPU5 274 aa13.89□□□□□ -0.19
Scn9a-201ENSMUST00000100063 Irx6Q9ER75 438 aa13.87□□□□□ -0.19
Scn9a-201ENSMUST00000100063 ClspnQ80YR7 1315 aa13.86□□□□□ -0.19
Scn9a-201ENSMUST00000100063 IqubQ8CDK3 788 aa13.85□□□□□ -0.19
Scn9a-201ENSMUST00000100063 Pcgf6Q99NA9 353 aa13.84□□□□□ -0.19
Scn9a-201ENSMUST00000100063 Anp32aO35381 247 aa13.84□□□□□ -0.19
Scn9a-201ENSMUST00000100063 Ythdc1E9Q5K9 736 aaKnown RBP13.8□□□□□ -0.2
Scn9a-201ENSMUST00000100063 Chic2Q9D9G3 165 aa13.79□□□□□ -0.2
Scn9a-201ENSMUST00000100063 Eid3Q3V124 375 aa13.79□□□□□ -0.2
Scn9a-201ENSMUST00000100063 Ggt6Q6PDE7 497 aa13.79□□□□□ -0.2
Scn9a-201ENSMUST00000100063 Rad21Q61550 635 aaKnown RBP13.78□□□□□ -0.2
Scn9a-201ENSMUST00000100063 Mapk8ip2Q9ERE9 830 aa13.78□□□□□ -0.2
Scn9a-201ENSMUST00000100063 Rtn4Q99P72 1162 aaKnown RBP13.75□□□□□ -0.21
Scn9a-201ENSMUST00000100063 Exosc9Q9JHI7 438 aaKnown RBP13.75□□□□□ -0.21
Scn9a-201ENSMUST00000100063 DekQ7TNV0 380 aaKnown RBP13.74□□□□□ -0.21
Scn9a-201ENSMUST00000100063 Ercc6F8VPZ5 1481 aa13.74□□□□□ -0.21
Retrieved 100 of 22,080 RNA–protein pairs in 167 ms